BAC Information

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BAC

Clone NameB6Ng01-086B21
Chromosome17 (Build37)
Map Location 48,887,737 - 49,036,434
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B21.bB6Ng01-086B21.g
ACCDH899603DH899604
length965694
definitionDH899603|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B21, 5' end.DH899604|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,887,737 - 48,888,677)(49,035,741 - 49,036,434)
sequence
gaattccacacttgggtactcattcaccaatcatagttggtgtgggggtt
agttttaactgtcaacttgacacagtctagaatcaactaagaagggagtt
tcaatatggaactgtctagttaggttggcccgtgggattgttggtggggg
attgtctttgttcagtgatgtagaaagactcacgtactttgggaggcacc
attccctagcaaggtaatcttggattgtgtaagaatgaactgagtacaag
ccagcagacatgtgtttatccattagtctctgctctaaccagatgctgcc
agtccctcctgccttgactttcccataaccatggattggagcctagacct
gtgagtccctttctctcttgagtgttttatcctctcgccagggaaagaga
ccaagacagtggtgttcaagtatgaactataaaacttgacagtgattgac
tggaataggttgctctgtctgtagggtgtttgtcacacagccatgaggac
ttaagtttaattccagcatctatataaaaagctaggtgtggtggtgtgcg
gctgtcatcccaatgcttgggaggcagaaatgggtggatctatggagctt
gccagatagccagtgtgctgactactcttaagtcaacttggcacacaaac
tggagttatctgaaaggagggaacctcaattaagaaaatgcctccttaag
atccagctgtaaggcattttttctaattggtgattaaaacacccagtcca
ttgtggggttgtgccatccctagactggtggtcctggggctctataacaa
aagcaggtgagcaagctggaggagcaagccaattaggcagtactcctctt
atgcctctgtataagctcctgcccttgctggagaaactttcctgacttcc
tttgatgatgaacagtgatgtggaagtataagtgacacaaccctttcttc
ccacttgcctttagg
gaattcttctggagacttgaacttggtttttttttttttttttttttttt
tttttaaacttccagaactatgagaaactagatttctctgggtagggatg
gggaggagcactcacaatggcattctgagcaggccaaccacaaagccgtg
ggggtttgataacaagccataagcttggtatcctgcgaggagcctggaat
ctcagacccttcacggtattcgacaagagaaataggattacattttttcc
acattcagggtgatgtttgtgacaagactcttgcagatgctttgaatcag
accgggggacctccgacccattattaatttgccagggcttttgcgaaggt
taggctttgtttgcagtttggttcaacagttcgtctgcctctgctgatgc
tgcaatcatttttctccttcgttctgtttcttgtgtgaaatatattgatt
gattttctgtgtgagaacaatctggcaacaccaaagcagtctttagttat
tcatggtgtcctgtacaccatgcactacccaaagattcctgggttcagct
cactgacatgttgactgtagtctgtctgtgctcaggtaagctctctcccc
ctccccttccctcccctcccatccctttcccttccctctccaactttcct
ttcctttcccttcctttcctttcctttcctttccattccattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_48887737_48888677
seq2: B6Ng01-086B21.b_47_991

seq1  GAATTCCACACTTGGGTACTCATTCACCAATCATAGTTGGTGTGGGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTTGGGTACTCATTCACCAATCATAGTTGGTGTGGGGGTT  50

seq1  AGTTTTAACTGTCAACTTGACACAGTCTAGAATCAACTAAGAAGGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAACTGTCAACTTGACACAGTCTAGAATCAACTAAGAAGGGAGTT  100

seq1  TCAATATGGAACTGTCTAGTTAGGTTGGCCCGTGGGATTGTTGGTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGGAACTGTCTAGTTAGGTTGGCCCGTGGGATTGTTGGTGGGGG  150

seq1  ATTGTCTTTGTTCAGTGATGTAGAAAGACTCACGTACTTTGGGAGGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTTGTTCAGTGATGTAGAAAGACTCACGTACTTTGGGAGGCACC  200

seq1  ATTCCCTAGCAAGGTAATCTTGGATTGTGTAAGAATGAACTGAGTACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAGCAAGGTAATCTTGGATTGTGTAAGAATGAACTGAGTACAAG  250

seq1  CCAGCAGACATGTGTTTATCCATTAGTCTCTGCTCTAACCAGATGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGACATGTGTTTATCCATTAGTCTCTGCTCTAACCAGATGCTGCC  300

seq1  AGTCCCTCCTGCCTTGACTTTCCCATAACCATGGATTGGAGCCTAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCCTGCCTTGACTTTCCCATAACCATGGATTGGAGCCTAGACCT  350

seq1  GTGAGTCCCTTTCTCTCTTGAGTGTTTTATCCTCTCGCCAGGGAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCCCTTTCTCTCTTGAGTGTTTTATCCTCTCGCCAGGGAAAGAGA  400

seq1  CCAAGACAGTGGTGTTCAAGTATGAACTATAAAACTTGACAGTGATTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGTGGTGTTCAAGTATGAACTATAAAACTTGACAGTGATTGAC  450

seq1  TGGAATAGGTTGCTCTGTCTGTAGGGTGTTTGTCACACAGCCATGAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGGTTGCTCTGTCTGTAGGGTGTTTGTCACACAGCCATGAGGAC  500

seq1  TTAAGTTTAATTCCAGCATCTATATAAAAAGCTAGGTGTGGTGGTGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTAATTCCAGCATCTATATAAAAAGCTAGGTGTGGTGGTGTGCG  550

seq1  GCTGTCATCCCAATGCTTGGGAGGCAGAAATGGGTGGATCTATGGAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATCCCAATGCTTGGGAGGCAGAAATGGGTGGATCTATGGAGCTT  600

seq1  GCCAGATAGCCAGTGTGCTGACTACTCTTAAGTCAACTTGGCACACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATAGCCAGTGTGCTGACTACTCTTAAGTCAACTTGGCACACAAAC  650

seq1  TGGAGTTATCTGAAAGGAGGGAACCTCAATTAAGAAAATGCCTCCTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTATCTGAAAGGAGGGAACCTCAATTAAGAAAATGCCTCCTTAAG  700

seq1  ATCCAGCTGTAAGGCA-TTTTTCTAATTGGTGATTAAAACACCCAGTCCA  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCCAGCTGTAAGGCATTTTTTCTAATTGGTGATTAAAACACCCAGTCCA  750

seq1  TTGT-GGGTTGTGCCATCCCTAGACTGGTGGTCCT-GGGCTCTATAAC-A  796
      |||| |||||||||||||||||||||||||||||| |||||||||||| |
seq2  TTGTGGGGTTGTGCCATCCCTAGACTGGTGGTCCTGGGGCTCTATAACAA  800

seq1  AAGCAGGTTGAGCAAGCTGGAGGAGCAAGCCAA-TAGGCAGTACTCCTC-  844
      ||||||| ||||||||||||||||||||||||| ||||||||||||||| 
seq2  AAGCAGG-TGAGCAAGCTGGAGGAGCAAGCCAATTAGGCAGTACTCCTCT  849

seq1  TATGCCTCTGTATTAGCTCCTG-CCTTGCTTGAGAACCTTTCCTGACTTC  893
      ||||||||||||| |||||||| ||||||| ||||| |||||||||||||
seq2  TATGCCTCTGTATAAGCTCCTGCCCTTGCTGGAGAAACTTTCCTGACTTC  899

seq1  CTTTGATGATGAACAGTGATGTGGAAGTATAAGGTGACACAAACCCTT  941
      |||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  CTTTGATGATGAACAGTGATGTGGAAGTATAA-GTGACAC-AACCCTT  945

seq1: chr17_49035741_49036434
seq2: B6Ng01-086B21.g_65_758 (reverse)

seq1  GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA  50
      |||| |||| |||||||||||||||||||||||| |||||||||||||||
seq2  GGAATGGAATGGAAAGGAAAGGAAAGGAAAGGAAGGGAAAGGAAAGGAAA  50

seq1  GTTGGAGAGGGAAGGGGAGGGGAGGGGAGGGGAGGGAAGGGGAGGGGGAG  100
      |||||||||||||||| | |||| ||||||||||||||||||||||||||
seq2  GTTGGAGAGGGAAGGGAAAGGGATGGGAGGGGAGGGAAGGGGAGGGGGAG  100

seq1  AGAGCCTACCTGAGCACAGACAGACTACAGTCAACATGTCAGTGAGCTGA  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTACCTGAGCACAGACAGACTACAGTCAACATGTCAGTGAGCTGA  150

seq1  ACACAGGAATCTTTGGGTAGTGCATGGTGTACAGGACACCATGAATAACT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAATCTTTGGGTAGTGCATGGTGTACAGGACACCATGAATAACT  200

seq1  AAAGACTGCTTTGGTGTTGCCAGATTGTTCTCACACAGAAAATCAATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCTTTGGTGTTGCCAGATTGTTCTCACACAGAAAATCAATCAA  250

seq1  TATATTTCACACAAGAAACAGAACGAAGGAGAAAAATGATTGCAGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCACACAAGAAACAGAACGAAGGAGAAAAATGATTGCAGCATCA  300

seq1  GCAGAGGCAGACGAACTGTTGAACCAAACTGCAAACAAAGCCTAACCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGACGAACTGTTGAACCAAACTGCAAACAAAGCCTAACCTTC  350

seq1  GCAAAAGCCCTGGCAAATTAATAATGGGTCGGAGGTCCCCCGGTCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCCCTGGCAAATTAATAATGGGTCGGAGGTCCCCCGGTCTGATT  400

seq1  CAAAGCATCTGCAAGAGTCTTGTCACAAACATCACCCTGAATGTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCTGCAAGAGTCTTGTCACAAACATCACCCTGAATGTGGAAAA  450

seq1  AATGTAATCCTATTTCTCTTGTCGAATACCGTGAAGGGTCTGAGATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCCTATTTCTCTTGTCGAATACCGTGAAGGGTCTGAGATTCCA  500

seq1  GGCTCCTCGCAGGATACCAAGCTTATGGCTTGTTATCAAACCACCACGGC  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCTCCTCGCAGGATACCAAGCTTATGGCTTGTTATCAAACCCCCACGGC  550

seq1  TTTGTGGTTGGCCTGCTCAGAATGCCATTGTGAGTGCTCCTCCCCATCAC  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGTGGTTGGCCTGCTCAGAATGCCATTGTGAGTGCTCCTCCCCATCCC  600

seq1  TACACAGAGAAATCTAGTTTCTCATAGTTCTGGAAGTTTAAAAAAAAAAA  650
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAGAAATCTAGTTTCTCATAGTTCTGGAAGTTTAAAAAAAAAAA  650

seq1  AAAAAAAAAAAAAAAAAACCAAGTTCAAGTCTCCAGAAGAATTC  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAACCAAGTTCAAGTCTCCAGAAGAATTC  694