BAC Information

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BAC

Clone NameB6Ng01-086C13
Chromosome17 (Build37)
Map Location 47,778,182 - 47,920,453
singlet/doubletdoublet
Overlap geneUsp49, 1110002E23Rik, Frs3, Pgc, LOC100043405
Upstream geneKlc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463
Downstream geneTcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086C13.bB6Ng01-086C13.g
ACCDH899633DH899634
length1,0661,065
definitionDH899633|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C13, 5' end.DH899634|Mus musculus domesticus DNA, BAC clone: B6Ng01-086C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,778,182 - 47,779,251)(47,919,215 - 47,920,453)
sequence
gaattcatcttagtctgcagctattattcgctgtaaaatgtacccaagct
ttacattcagtagttccaaacatttacatataaataaagtgaaacatata
atttactaccccttgacctgtaaaggggtggtagacatttaaaagtcagt
gctagacagtaggatggggatttgggaaaattgaaaaccttgcacaccat
tgtcaggaatggaaacttcttggaggtaagtttggcagtgttcattagaa
tttcaaatgtgcatatgtccctctctaggaacttgttctatatccatgta
cttgagataaaaagagaagtatgaagtctgatacagtggcttaacattgt
agtacccactctcatgagggggaagcaagatggctgccacatgtttaaga
taacctgggctacatagatagaccttgtctaaaaaggtcagagaaacggg
cagggtaactgggtttttgttttttaacccttatgttctatcctaagagg
atgtggagtagaactgtcattttgcactgaacttggtaatcaggttgtgt
gtgtgtttgtgaagaccaaaggtcaaactcagatgacatcctacaggagc
catcagccatctgtgttgctttttaagactgagcttctcatggggaccta
gggctggccccaaaagagccccagggatcctcttgtctcccttcctccca
ctgagattccagggagttaccagtattccttcctttgtgtgtgggaactg
agggcttggcatttgtgcagtatccactttactgatggagtgagtcaggt
agtgttagcatgtggtgataagctcactaactgtggcacctacatagtgt
ccaatgtctgcctgtgaaatctctttaaacagggcaagctgctgatgctt
ctgagcattagaacgaatgggaggtggggaggattctccaaaagtcattg
ttttctcagtggacgtgtgagggcgagtgtctccctgtggactgaggtgt
gcaagtcactaaagttttagatttgctcttgtgttccagtcagccttatt
taaggactttaagcag
gaattcatcccctcccctgggagcatcctggcagataatgtaaacagtga
aagtctagctgacctctgaatgtcagtgaccactgagagaggaggcaggc
agaaaatactttcccgctccccagcacctcctgggcagagctatgcaccc
catattcctgatggcaaatctctaacctcccttactgggcttgggagaat
ggggaagggtcaaaggctagctactgaggactgggaaggagagaccctgt
atgctgatcaacctcagtgccttccagtcaggatgagccaagagacaggg
aatgtccaaagtctatgtctctctcttcctttccccccaagactggaaag
gacccactgcgaaagcccagcagcatgggacccacggcaacgcaactgtg
tacaggtaccaggacagaattttctcctgcctcctacctcttacagcacc
aactcctaaggggaaggctcagtggcactagaaagtctctgcctctccca
gtggcactgccaaccccatctgcataccaggacccatctggtacttccag
ctgctgtctgtccaggtccagcttggtcacaacccagtgagctcgccagg
ccagcagactaccttcactggctgagtgacacggggatgagggtgcctag
ctttcttgatccctgtaaagtaaaccaatgaaaagtgcttccagggctgg
gtgtggcgccacactttaatccctccactggggaggcagatgcaggcaga
tctctgaaaattgaaggccagcctggtctacatagtgaattccagggcaa
ttaaggctacatagtaaaacctagattcccaggagagagaatgtggggaa
tgcaccctgcaggcattcagcaactagaagaaagggtccctgtatcctct
ggtttcaccggccctaaacagttatttacatctgagtatgaaccagccag
gtagaacttttcctaaggggatgagtggaagtcagataggagaacagaga
aatgtcagtgcaaagttcttggattcaggaaagagatatcaagatagaca
tgaggaagaagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47778182_47779251
seq2: B6Ng01-086C13.b_44_1109

seq1  GAATTCATCTTAGTCTGCAGCTATTATTCGCTGTAAAATGTACCCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTAGTCTGCAGCTATTATTCGCTGTAAAATGTACCCAAGCT  50

seq1  TTACATTCAGTAGTTCCAAACATTTACATATAAATAAAGTGAAACATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCAGTAGTTCCAAACATTTACATATAAATAAAGTGAAACATATA  100

seq1  ATTTACTACCCCTTGACCTGTAAAGGGGTGGTAGACATTTAAAAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTACCCCTTGACCTGTAAAGGGGTGGTAGACATTTAAAAGTCAGT  150

seq1  GCTAGACAGTAGGATGGGGATTTGGGAAAATTGAAAACCTTGCACACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACAGTAGGATGGGGATTTGGGAAAATTGAAAACCTTGCACACCAT  200

seq1  TGTCAGGAATGGAAACTTCTTGGAGGTAAGTTTGGCAGTGTTCATTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAATGGAAACTTCTTGGAGGTAAGTTTGGCAGTGTTCATTAGAA  250

seq1  TTTCAAATGTGCATATGTCCCTCTCTAGGAACTTGTTCTATATCCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGTGCATATGTCCCTCTCTAGGAACTTGTTCTATATCCATGTA  300

seq1  CTTGAGATAAAAAGAGAAGTATGAAGTCTGATACAGTGGCTTAACATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATAAAAAGAGAAGTATGAAGTCTGATACAGTGGCTTAACATTGT  350

seq1  AGTACCCACTCTCATGAGGGGGAAGCAAGATGGCTGCCACATGTTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCACTCTCATGAGGGGGAAGCAAGATGGCTGCCACATGTTTAAGA  400

seq1  TAACCTGGGCTACATAGATAGACCTTGTCTAAAAAGGTCAGAGAAACGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGGCTACATAGATAGACCTTGTCTAAAAAGGTCAGAGAAACGGG  450

seq1  CAGGGTAACTGGGTTTTTGTTTTTTAACCCTTATGTTCTATCCTAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAACTGGGTTTTTGTTTTTTAACCCTTATGTTCTATCCTAAGAGG  500

seq1  ATGTGGAGTAGAACTGTCATTTTGCACTGAACTTGGTAATCAGGTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGTAGAACTGTCATTTTGCACTGAACTTGGTAATCAGGTTGTGT  550

seq1  GTGTGTTTGTGAAGACCAAAGGTCAAACTCAGATGACATCCTACAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGTGAAGACCAAAGGTCAAACTCAGATGACATCCTACAGGAGC  600

seq1  CATCAGCCATCTGTGTTGCTTTTTAAGACTGAGCTTCTCATGGGGACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCATCTGTGTTGCTTTTTAAGACTGAGCTTCTCATGGGGACCTA  650

seq1  GGGCTGGCCCCAAAAGAGCCCCAGGGATCCTCTTGTCTCCCTTCCTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCCCCAAAAGAGCCCCAGGGATCCTCTTGTCTCCCTTCCTCCCA  700

seq1  CTGAGATTCCAGGGAGTTACCAGTATTCCTTCCTTTGTGTGTGGGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTCCAGGGAGTTACCAGTATTCCTTCCTTTGTGTGTGGGAACTG  750

seq1  AGGGCTTGGCATTTGTGCAGTATCCACTTTACTGATGGAGTGAGTCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTGGCATTTGTGCAGTATCCACTTTACTGATGGAGTGAGTCAGGT  800

seq1  AGTGTTAGCATGTGGTGATAAGCTCACTAACTGTGGCACCTACATAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGCATGTGGTGATAAGCTCACTAACTGTGGCACCTACATAGTGT  850

seq1  CCAATGTCTGCCTGTGAAATCTCTTTAAACAGGGCAAGCTGCTGATGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCTGCCTGTGAAATCTCTTTAAACAGGGCAAGCTGCTGATGCTT  900

seq1  CTGAGCAATTAGAACGAATGGGAGGTGGGGAGGATTCTCCAAAAAGTCAT  950
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGAGC-ATTAGAACGAATGGGAGGTGGGGAGGATTCTCC-AAAAGTCAT  948

seq1  TGTTTTCCCAGTGGACGTGTGAGGGCGAGTGTCTTCCCTGTGGACTGAGG  1000
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTTTCTCAGTGGACGTGTGAGGGCGAGTGTC-TCCCTGTGGACTGAGG  997

seq1  TGTGCAAGTCACTAGAGTTTTAGATTTGCTCTTGTGTTCCAGCCCAGCTT  1050
      |||||||||||||| ||||||||||||||||||||||||||| |   |||
seq2  TGTGCAAGTCACTAAAGTTTTAGATTTGCTCTTGTGTTCCAGTCAGCCTT  1047

seq1  ATTTAAAGAACTTTAAGCTG  1070
      |||| ||| ||||||||| |
seq2  ATTT-AAGGACTTTAAGCAG  1066

seq1: chr17_47919215_47920453
seq2: B6Ng01-086C13.g_69_1133 (reverse)

seq1  TCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTCCTCCTCTTCCTTCTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTCCTCTCCCTCCTCCTGCCCCTCCTCTTCCTGTTCCTCCTTCTCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCTTCTGCTCCTCTTCCTTCTCCTCCTCTTCCTCCTGTTCCTCTTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCATTCTCTTTCTCATCTCCTTCTTTCTTCCTCATGGTCTATCTTTG  200
                          ||||   ||||||||||| ||||||| |||
seq2  --------------------TCCT--CTTCTTCCTCAT-GTCTATC-TTG  26

seq1  ATATCTTCTTTCCTGGATCCAAG-ACTTTGCACTGACATTTCTCTGTTCT  249
      ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
seq2  ATATC-TCTTTCCTGAATCCAAGAACTTTGCACTGACATTTCTCTGTTCT  75

seq1  CCTATCCTGACTTCCACTCATCCCCTTAGGAAAAGTTCTACCTGGCTGGT  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAT-CTGACTTCCACTCATCCCCTTAGGAAAAGTTCTACCTGGCTGGT  124

seq1  TCATACTCAGATGTAAATAACTGGTTAGGGCCGGTGAAACCAGAGGATAC  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCATACTCAGATGTAAATAACTGTTTAGGGCCGGTGAAACCAGAGGATAC  174

seq1  AGGGACCCTTTCTTCTAGTTGCTGAATGCCTGCAGGGTGCATTCCCCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCTTTCTTCTAGTTGCTGAATGCCTGCAGGGTGCATTCCCCACA  224

seq1  TTCTCTCTCCTGGGAATCTAGGTTTTACTATGTAGCCTTAATTGCCCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCCTGGGAATCTAGGTTTTACTATGTAGCCTTAATTGCCCTGG  274

seq1  AATTCACTATGTAGACCAGGCTGGCCTTCAATTTTCAGAGATCTGCCTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTATGTAGACCAGGCTGGCCTTCAATTTTCAGAGATCTGCCTGC  324

seq1  ATCTGCCTCCCCAGTGGAGGGATTAAAGTGTGGCGCCACACCCAGCCCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCCCCAGTGGAGGGATTAAAGTGTGGCGCCACACCCAGCCCTG  374

seq1  GAAGCAC-TTTCATTGGTTTACTTTACAGGGATCAAGAAAGCTAGGCACC  598
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTTTTCATTGGTTTACTTTACAGGGATCAAGAAAGCTAGGCACC  424

seq1  CTCATCCCCGTGTCACTCAGCCAGTGAAGGTAGTCTGCTGGCCTGGCGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCCGTGTCACTCAGCCAGTGAAGGTAGTCTGCTGGCCTGGCGAG  474

seq1  CTCACTGGGTTGTGACCAAGCTGGACCTGGACAGACAGCAGCTGGAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGGTTGTGACCAAGCTGGACCTGGACAGACAGCAGCTGGAAGTA  524

seq1  CCAGATGGGTCCTGGTATGCAGATGGGGTTGGCAGTGCCACTGGGAGAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGGTCCTGGTATGCAGATGGGGTTGGCAGTGCCACTGGGAGAGG  574

seq1  CAGAGACTTTCTAGTGCCACTGAGCCTTCCCCTTAGGAGTTGGTGCTGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTTCTAGTGCCACTGAGCCTTCCCCTTAGGAGTTGGTGCTGTA  624

seq1  AGAGGTAGGAGGCAGGAGAAAATTCTGTCCTGGTACCTGTACACAGTTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGGAGGCAGGAGAAAATTCTGTCCTGGTACCTGTACACAGTTGC  674

seq1  GTTGCCGTGGGTCCCATGCTGCTGGGCTTTCGCAGTGGGTCCTTTCCAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCGTGGGTCCCATGCTGCTGGGCTTTCGCAGTGGGTCCTTTCCAGT  724

seq1  CTTGGGGGGAAAGGAAGAGAGAGACATAGACTTTGGACATTCCCTGTCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGGGAAAGGAAGAGAGAGACATAGACTTTGGACATTCCCTGTCTC  774

seq1  TTGGCTCATCCTGACTGGAAGGCACTGAGGTTGATCAGCATACAGGGTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCATCCTGACTGGAAGGCACTGAGGTTGATCAGCATACAGGGTCT  824

seq1  CTCCTTCCCAGTCCTCAGTAGCTAGCCTTTGACCCTTCCCCATTCTCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCCAGTCCTCAGTAGCTAGCCTTTGACCCTTCCCCATTCTCCCA  874

seq1  AGCCCAGTAAGGGAGGTTAGAGATTTGCCATCAGGAATATGGGGTGCATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTAAGGGAGGTTAGAGATTTGCCATCAGGAATATGGGGTGCATA  924

seq1  GCTCTGCCCAGGAGGTGCTGGGGAGCGGGAAAGTATTTTCTGCCTGCCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCCAGGAGGTGCTGGGGAGCGGGAAAGTATTTTCTGCCTGCCTC  974

seq1  CTCTCTCAGTGGTCACTGACATTCAGAGGTCAGCTAGACTTTCACTGTTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAGTGGTCACTGACATTCAGAGGTCAGCTAGACTTTCACTGTTT  1024

seq1  ACATTATCTGCCAGGATGCTCCCAGGGGAGGGGATGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCTGCCAGGATGCTCCCAGGGGAGGGGATGAATTC  1065