BAC Information

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BAC

Clone NameB6Ng01-086M11
Chromosome17 (Build37)
Map Location 4,033,142 - 4,034,357
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik, Ppia-ps17_26.1, Arid1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086M11.bB6Ng01-086M11.g
ACCDH900085DH900086
length1,2071,226
definitionDH900085|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M11, 5' end.DH900086|Mus musculus domesticus DNA, BAC clone: B6Ng01-086M11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaatgcacaacaaactatctcattacctagatgtctttagggtc
ataaaactaaattccttctttgacccagaatgaaaaaaaattgatactcg
attagacatatttttgttattttatgtatttcatctgcatgtacatgtgt
gtaccatgcatgcgcctggtgccagcagagaccgtgagagagcatggaat
ctcctagaactattgtcacaaatggttgtgagctgacacacagttgctgg
caactgaacccaggtcctctggaagagcatctagtgctcttaaccactga
gccatctgtttatatttttttattcatccaccagcttgcaaaaaaaaaaa
actgtaggtttatgacatatgtctttagggtcacatatgctcatgtgcct
gatgactgactccacaagagccaaatgccatattagggacttccctggaa
cagaatagaaagaaaatcaggtcttgatgggctatctatctaaagcagaa
ttgtaaaaaaaaagaaaactaaaaccatcaaaaccaaacaacaaaacaac
aaccccccccaaacaacaacaaagccaaaggaagccaaaacataaaatag
acctgctgatcaagagtcaaagaggaaaaatatttataagctaggaaaag
aactataacacagtgaacaatggactaccttataagtggaaaatagaaat
ataaagaaaagttgagtaaaagccccttgaaaaattttatcgttaactgt
tttctgtttaaaaattttgcaacagagcacttaatccttgcctttattat
tgtaggtaagctatacttaagtccaagttagacatgcatgacttgcaaaa
tgaaaattataatatcaaagtgcttaccaaaattgatagtttaaattttc
tcatgatatttccattttattcatgcaacaggtagactttataattcttt
tgtaaaatataattaagtgtattcaataaatgtgggctcttgtacaataa
atggtgtacaaaaataacatgcatcactaccattaacagactgacttgtt
tatctgcaatttctgagaacattgttatgatattactggctgacataggt
agaacatacaaagggcctcaccattggcaaggtttgaatactggagcagg
cagtcatgcacaggaggggaggttacgaatggctgatagtggatggggtg
atttgaa
gaattcttagctccttctccagcaacaagtctgcctgcatgcttgacaca
atgatgataatggactgaacctctgaaactgtaagccagcctcaattaaa
tgtttgcctttataagagttgccttatggacatggtgtctcttcacagca
ataaaaatcgtatctaggacatatgctaataatagcaatatgatctttta
ttgttatagaaaggataaattttcatgaaccttttgatcctgcatgatgt
agaacatgttcaatgtttttcagaattcactaatatattgattctgtagt
cttcaatgctgagaactgcactcatacatacatacatgcatacatacata
gtataatatagcagagatatattgagggccagttcagaaactggagaatg
ttatgtcttaagtccaagtaaaatttatcaaccttactgttatcaaagtc
agtaactcaggcagcaattttttaaaaattgttttaagacaacatataca
tatagttaaaagtatgttgctttgacacatggtgaggagtgagtgatatt
agaaaaatattgtctttgttttccataattacagtcatgtcccaataaaa
gcagaaaatggcagaaaaacacggcagcggcctcacatgtgagtgtagat
gtctcaggaagcatttagtggtgatatgtgttgtaatgggctctggggaa
gaaagtgtgcatgttgtgggttcccatacggggacccatgtgaacatgaa
ggcacactgtgcagcatgagtgagtgcttacaaacatgcctgagatttgt
gatgcacttgattcttaattaaattttagttattgcttgttcaaaaacca
cctaatattgtcaagtttcaccttcccacatccagttacagcatgtcatg
ggggtgataaagggtggcccacactttaaaatctgggctctggatagggc
acttctgtttattgtggtttctattttgatgctattaagtttacaaaagt
aatagtcacgtaaaacattggcgctagggttttcaatgtatttgaaacga
catttctccatgttttccctctttctgtcatcctatgcactctgcacatg
gggtattccgaacactggctttcaagtactaattgttgtttcagtgtcac
acctcaggataaactgcctcgcataaccatttcctggtacttcatagctc
gtaccatgaagcgccttcttctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_4033142_4034357
seq2: B6Ng01-086M11.b_45_1251

seq1  GAATTCTAATGCACAACAAACTATCTCATTACCTAGATGTCTTTAGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGCACAACAAACTATCTCATTACCTAGATGTCTTTAGGGTC  50

seq1  ATAAAACTAAATTCCTTCTTTGACCCAGAATGAAAAAAAATTGATACTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTAAATTCCTTCTTTGACCCAGAATGAAAAAAAATTGATACTCG  100

seq1  ATTAGACATATTTTTGTTATTTTATGTATTTCATCTGCATGTACATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACATATTTTTGTTATTTTATGTATTTCATCTGCATGTACATGTGT  150

seq1  GTACCATGCATGCGCCTGGTGCCAGCAGAGACCGTGAGAGAGCATGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGCATGCGCCTGGTGCCAGCAGAGACCGTGAGAGAGCATGGAAT  200

seq1  CTCCTAGAACTATTGTCACAAATGGTTGTGAGCTGACACACAGTTGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAACTATTGTCACAAATGGTTGTGAGCTGACACACAGTTGCTGG  250

seq1  CAACTGAACCCAGGTCCTCTGGAAGAGCATCTAGTGCTCTTAACCACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAACCCAGGTCCTCTGGAAGAGCATCTAGTGCTCTTAACCACTGA  300

seq1  GCCATCTGTTTATATTTTTTTATTCATCCACCAGCTTGCAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGTTTATATTTTTTTATTCATCCACCAGCTTGCAAAAAAAAAAA  350

seq1  ACTGTAGGTTTATGACATATGTCTTTAGGGTCACATATGCTCATGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGTTTATGACATATGTCTTTAGGGTCACATATGCTCATGTGCCT  400

seq1  GATGACTGACTCCACAAGAGCCAAATGCCATATTAGGGACTTCCCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGACTCCACAAGAGCCAAATGCCATATTAGGGACTTCCCTGGAA  450

seq1  CAGAATAGAAAGAAAATCAGGTCTTGATGGGCTATCTATCTAAAGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGAAAGAAAATCAGGTCTTGATGGGCTATCTATCTAAAGCAGAA  500

seq1  TTGTAAAAAAAAAGAAAACTAAAACCATCAAAACCAAACAACAAAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAAAAAGAAAACTAAAACCATCAAAACCAAACAACAAAACAAC  550

seq1  AACCCCCCCCAAACAACAACAAAGCCAAAGGAAGCCAAAACATAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCCCAAACAACAACAAAGCCAAAGGAAGCCAAAACATAAAATAG  600

seq1  ACCTGCTGATCAAGAGTCAAAGAGGAAAAATATTTATAAGCTAGGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGATCAAGAGTCAAAGAGGAAAAATATTTATAAGCTAGGAAAAG  650

seq1  AACTATAACACAGTGAACAATGGACTACCTTATAAGTGGAAAATAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAACACAGTGAACAATGGACTACCTTATAAGTGGAAAATAGAAAT  700

seq1  ATAAAGAAAAGTTGAGTAAAAGCCCCTTGAAAAATTTTATCGTTAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAGTTGAGTAAAAGCCCCTTGAAAAATTTTATCGTTAACTGT  750

seq1  TTTCTGTTTAAAAATTTTGCAACAGAGCACTTAATCCTTGCCTTTATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTAAAAATTTTGCAACAGAGCACTTAATCCTTGCCTTTATTAT  800

seq1  TGTAGGTAAGCTATACTTAAGTCCAAGTTAGACATGCATGACTTGCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAAGCTATACTTAAGTCCAAGTTAGACATGCATGACTTGCAAAA  850

seq1  TGAAAATTATAATATCAAAGTGCTTACCAAAATTGATAGTTTAAATTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTATAATATCAAAGTGCTTACCAAAATTGATAGTTTAAATTTTC  900

seq1  TCATGATATTTCCATTTTATTCATGCAACAGGTAGACTTTATAATTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATTTCCATTTTATTCATGCAACAGGTAGACTTTATAATTCTTT  950

seq1  TGTAAAATATAATTAAGTGTATTCAATAAATGT-GGCTC-TGTACAATAA  998
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TGTAAAATATAATTAAGTGTATTCAATAAATGTGGGCTCTTGTACAATAA  1000

seq1  AT-GTGTACAAAAATAACATGCATCACTACCAATTAACAGACTGACTTGT  1047
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGTGTACAAAAATAACATGCATCACTACC-ATTAACAGACTGACTTGT  1049

seq1  TTATCTGCAATTTCTGAGACATTTGTTATGATATTAACTGGCTGACATAA  1097
      |||||||||||||||||||   ||||||||||||| |||||||||||| |
seq2  TTATCTGCAATTTCTGAGAACATTGTTATGATATT-ACTGGCTGACAT-A  1097

seq1  GGTAGAACATACAAAGGGCCTCAGCATTGGCAAAGGTTTGAATACT-GAG  1146
      ||||||||||||||||||||||| ||||||| |||||||||||||| |||
seq2  GGTAGAACATACAAAGGGCCTCACCATTGGC-AAGGTTTGAATACTGGAG  1146

seq1  CAGAGCAGTCAATGCACAAGGAGGGGAAGGTAAACGAATGGCTGATTTAA  1196
      ||| |||||| |||||| ||||||||| | |  |||||||||||||   |
seq2  CAG-GCAGTC-ATGCAC-AGGAGGGGAGGTT--ACGAATGGCTGAT---A  1188

seq1  GTTGGATGGGTTGATTTGAA  1216
      | |||||||| |||||||||
seq2  G-TGGATGGGGTGATTTGAA  1207