BAC Information

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BAC

Clone NameB6Ng01-087J08
Chromosome17 (Build37)
Map Location 26,402,532 - 26,553,268
singlet/doubletdoublet
Overlap geneLuc7l, EG383229, EG240055
Upstream geneUbe2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643
Downstream geneC230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J08.bB6Ng01-087J08.g
ACCDH900668DH900669
length1,138724
definitionDH900668|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J08, 5' end.DH900669|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,402,532 - 26,403,674)(26,552,545 - 26,553,268)
sequence
gaattcaggtgctaaagtttgcatggctaacacttgaccagccaagcaat
ttccttagttcacttggtaatgttacagagagttagagatccttctataa
gtttggaaataagtaaatcagctatttggtttgacaaaacaatcacaata
aattggtaagcagaatatcagctcatgctgtcactacaaataccagtagc
agggataggaattgtaattactttttatgagatctcatatgtaaccctgg
ctggccagaaattacaaagatgtgcccacctaataatgtatatagggaat
ttcaggcccacaaatgttatacatgaccctatctcaaaacgataacaacc
aaacaaagaaatagaggcttgttcctgttacacacataggtggtaagact
atggagtgttggcagaatatggtgtgcacacctttcatccagcactctgg
aggctaaggcaagaagactgtgagttcaaggccagtctggaatacatacc
aaatgttgggccagccttgtctatgagactttgtcagaggaaggtagtct
ggagatgtaatttagtagagtgctttcctagcatattcatggtcttgggt
ttcatcttcagcactcctcttctcaaataaaagccatacaatgacaaaaa
aagcctatgtagtattgatcataactctctgcttttcccaaactaggcta
tggatcacttagagtccttcattgcagagtgtgatcggagaaccgaactt
gccaaaaagcggctggctgaaacacaggaggaaatcagtgcagaagtttc
ggctaaggtatattaagtaactgctataactcattttttctcttaccctc
acactgggtgaggattctggatagatggtgctttccgtcttgactgtttt
cattggagacaggtctgtgaccaagcatttgtgtgtcacagaacctgtat
gcctccctgcctgcctttcttttattctttttgtgacagggctaactaag
agattagtcagccttgagtttacagtgatctgcctgcctcttgagtgcta
gattaaggcatgcagatctaatttaaatttcttaggcttttcgcagttac
tgattaaaaaaaaaagaatgctatgtggctgataaatc
gaattctagttgagtatgtactgtgtctccgtcatgggcttctgtgactg
ccatctctgatgtgacctcaggtccctccagatcggtggctgggtctctt
cagcctagcaagaagcggttatcactctgtctagtacagacccaggttcc
aaagccacctctgaagctgaccagcctgtgactccacctggctgacctta
ggaatgatccagtaaaagccacccaggggcttgttagtagaaggggctgt
ctgtctccccagtggtccttaggtctcaggttggtccaatcccttccagg
ggaagagacaactctattaggataactgccggaggaagggctgtgggggt
gtcagaacagagatggggtgtcagctgggctgtgctaaatctgacctaca
gccaacttgcttcttctctgaactaccctcccccaacacacacacacaca
cacacacacacacacacagagagagagagagagagagagagagagagaga
gagagagagagagagagagagcctctgcttaaggatgctgcgaatgccga
atgcccagttttatgcccaaacacttctgaagacttgggacacagtgggg
gtgaggggcggggcagacaggctgacagggcccatgcagtctcccaccac
tgcctgtcatcgggtatttctcctgtactgaggtttaacttcttgtgtaa
aatcggggtgtctttttcttagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26402532_26403674
seq2: B6Ng01-087J08.b_48_1185

seq1  GAATTCAGGTGCTAAAGTTTGCATGGCTAACACTTGACCAGCCAAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGCTAAAGTTTGCATGGCTAACACTTGACCAGCCAAGCAAT  50

seq1  TTCCTTAGTTCACTTGGTAATGTTACAGAGAGTTAGAGATCCTTCTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGTTCACTTGGTAATGTTACAGAGAGTTAGAGATCCTTCTATAA  100

seq1  GTTTGGAAATAAGTAAATCAGCTATTTGGTTTGACAAAACAATCACAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAATAAGTAAATCAGCTATTTGGTTTGACAAAACAATCACAATA  150

seq1  AATTGGTAAGCAGAATATCAGCTCATGCTGTCACTACAAATACCAGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTAAGCAGAATATCAGCTCATGCTGTCACTACAAATACCAGTAGC  200

seq1  AGGGATAGGAATTGTAATTACTTTTTATGAGATCTCATATGTAACCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGGAATTGTAATTACTTTTTATGAGATCTCATATGTAACCCTGG  250

seq1  CTGGCCAGAAATTACAAAGATGTGCCCACCTAATAATGTATATAGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGAAATTACAAAGATGTGCCCACCTAATAATGTATATAGGGAAT  300

seq1  TTCAGGCCCACAAATGTTATACATGACCCTATCTCAAAACGATAACAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCCACAAATGTTATACATGACCCTATCTCAAAACGATAACAACC  350

seq1  AAACAAAGAAATAGAGGCTTGTTCCTGTTACACACATAGGTGGTAAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAAATAGAGGCTTGTTCCTGTTACACACATAGGTGGTAAGACT  400

seq1  ATGGAGTGTTGGCAGAATATGGTGTGCACACCTTTCATCCAGCACTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGTTGGCAGAATATGGTGTGCACACCTTTCATCCAGCACTCTGG  450

seq1  AGGCTAAGGCAAGAAGACTGTGAGTTCAAGGCCAGTCTGGAATACATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGGCAAGAAGACTGTGAGTTCAAGGCCAGTCTGGAATACATACC  500

seq1  AAATGTTGGGCCAGCCTTGTCTATGAGACTTTGTCAGAGGAAGGTAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGGGCCAGCCTTGTCTATGAGACTTTGTCAGAGGAAGGTAGTCT  550

seq1  GGAGATGTAATTTAGTAGAGTGCTTTCCTAGCATATTCATGGTCTTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTAATTTAGTAGAGTGCTTTCCTAGCATATTCATGGTCTTGGGT  600

seq1  TTCATCTTCAGCACTCCTCTTCTCAAATAAAAGCCATACAATGACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTCAGCACTCCTCTTCTCAAATAAAAGCCATACAATGACAAAAA  650

seq1  AAGCCTATGTAGTATTGATCATAACTCTCTGCTTTTCCCAAACTAGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTATGTAGTATTGATCATAACTCTCTGCTTTTCCCAAACTAGGCTA  700

seq1  TGGATCACTTAGAGTCCTTCATTGCAGAGTGTGATCGGAGAACCGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACTTAGAGTCCTTCATTGCAGAGTGTGATCGGAGAACCGAACTT  750

seq1  GCCAAAAAGCGGCTGGCTGAAACACAGGAGGAAATCAGTGCAGAAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAGCGGCTGGCTGAAACACAGGAGGAAATCAGTGCAGAAGTTTC  800

seq1  GGCTAAGGTATATTAAGTAACTGCTATAACTCATTTTTTCTCTTACCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGGTATATTAAGTAACTGCTATAACTCATTTTTTCTCTTACCCTC  850

seq1  ACACTGGGTGAGGATTCTGGATAGATGGTGCTTTCCGTCTTGACTGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGTGAGGATTCTGGATAGATGGTGCTTTCCGTCTTGACTGTTTT  900

seq1  CATTGGAGACAGGGTCTGTGACCAAGCATTTGTGTGTCACAGGAACCTGT  950
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  CATTGGAGACA-GGTCTGTGACCAAGCATTTGTGTGTCACA-GAACCTGT  948

seq1  ATGCCTCCCTGCCTGCCTTTCTTTTATTCTTTTTGTGACAAGGGCTAACT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGCCTCCCTGCCTGCCTTTCTTTTATTCTTTTTGTGAC-AGGGCTAACT  997

seq1  AAGAAGATTAGGTCAGCCTTGAGTTTACAGTGATCTGCCTGCCTCTTGAG  1050
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAG-AGATTA-GTCAGCCTTGAGTTTACAGTGATCTGCCTGCCTCTTGAG  1045

seq1  TGCTAGGATTAAAGGCATGCAGATCTAATTAAAATTTCTTAGGCTGTACG  1100
      ||||| |||| ||||||||||||||||||| |||||||||||||| | ||
seq2  TGCTA-GATT-AAGGCATGCAGATCTAATTTAAATTTCTTAGGCTTTTCG  1093

seq1  CAGTTACTGATTAAAAAAAAA--GATGCTATTGTGCTGATAAATC  1143
      |||||||||||||||||||||   |||||||   |||||||||||
seq2  CAGTTACTGATTAAAAAAAAAAGAATGCTATGTGGCTGATAAATC  1138

seq1: chr17_26552545_26553268
seq2: B6Ng01-087J08.g_70_793 (reverse)

seq1  TCCTAAG-AAAAGACACCCCGATTTTACACAAGAAGTTTAACCTCAGTAC  49
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TCCTAAGAAAAAGACACCCCGATTTTACACAAGAAGTTAAACCTCAGTAC  50

seq1  AGGAGAAATGACCCGGTGACAGGCAGTGGTGGGAGACTGCATGGGCCCTG  99
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAT-ACCCGATGACAGGCAGTGGTGGGAGACTGCATGGGCCCTG  99

seq1  TCAGCCTGTCTGCCCCGCCCCTCACCCCCACTGTGTCCCAAGTCTTCAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTCTGCCCCGCCCCTCACCCCCACTGTGTCCCAAGTCTTCAGA  149

seq1  AGTGTTTGGGCATAAAACTGGGCATTCGGCATTCGCAGCATCCTTAAGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGGGCATAAAACTGGGCATTCGGCATTCGCAGCATCCTTAAGCA  199

seq1  GAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  249

seq1  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGGGGAGGG  299

seq1  TAGTTCAGAGAAGAAGCAAGTTGGCTGTAGGTCAGATTTAGCACAGCCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGAGAAGAAGCAAGTTGGCTGTAGGTCAGATTTAGCACAGCCCA  349

seq1  GCTGACACCCCATCTCTGTTCTGACACCCCCACAGCCCTTCCTCCGGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACACCCCATCTCTGTTCTGACACCCCCACAGCCCTTCCTCCGGCAG  399

seq1  TTATCCTAATAGAGTTGTCTCTTCCCCTGGAAGGGATTGGACCAACCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAATAGAGTTGTCTCTTCCCCTGGAAGGGATTGGACCAACCTGA  449

seq1  GACCTAAGGACCACTGGGGAGACAGACAGCCCCTTCTACTAACAAGCCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGGACCACTGGGGAGACAGACAGCCCCTTCTACTAACAAGCCCC  499

seq1  TGGGTGGCTTTTACTGGATCATTCCTAAGGTCAGCCAGGTGGAGTCACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCTTTTACTGGATCATTCCTAAGGTCAGCCAGGTGGAGTCACAG  549

seq1  GCTGGTCAGCTTCAGAGGTGGCTTTGGAACCTGGGTCTGTACTAGACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCAGCTTCAGAGGTGGCTTTGGAACCTGGGTCTGTACTAGACAGA  599

seq1  GTGATAACCGCTTCTTGCTAGGCTGAAGAGACCCAGCCACCGATCTGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAACCGCTTCTTGCTAGGCTGAAGAGACCCAGCCACCGATCTGGAG  649

seq1  GGACCTGAGGTCACATCAGAGATGGCAGTCACAGAAGCCCATGACGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGGTCACATCAGAGATGGCAGTCACAGAAGCCCATGACGGAGA  699

seq1  CACAGTACATACTCAACTAGAATTC  724
      |||||||||||||||||||||||||
seq2  CACAGTACATACTCAACTAGAATTC  724