BAC Information

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BAC

Clone NameB6Ng01-088A03
Chromosome17 (Build37)
Map Location 85,578,373 - 85,738,062
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A03.bB6Ng01-088A03.g
ACCDH900980DH900981
length1,088561
definitionDH900980|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A03, 5' end.DH900981|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,736,964 - 85,738,062)(85,578,373 - 85,578,933)
sequence
gaattctcatcacctttgcgtagatgattagttgctgatataaaaataat
aattatcattgtacctattacttctaataaaatatcctaggcaggtattg
tagcaatgattttcaaattaagttggtttcttctttgcaacagttctatg
agacagtctgagtatttgtgttttgtagttaaaaaagctaaaacccaaag
aaatcaagtaaacttaaaatcctcaaactagaaaaccactgggcccagat
ttgaacccgtgcacttttgaaccgtccaggcagttacagatctaattctc
cgagaccagcgcctctcagccttcctgatgctgtgaccctttaacacagc
tcctcgtgtagtggtggcccccagccatgaaatgattttcattgtttctt
cataactgtcattttgatactgcatagatcataatgtaaatatctgatag
gcgactgtaaaggggtcgcaacccacaggttaagcacctctgtctagacc
gaggccagggagcatctgtgtcttctagagaccttcttcccaagcaaatc
gtcaaacggtggggacaaggtgaagttctttaaaaagctagaaaatcctt
cccagagactagactctctccgaggtctgtggcttggatcttggaattgg
ttttctttaaagtaaccgaataaagcatctttaaaaaaataaaacaaaac
aaacaacaacaacaaccccgccccctccccagggttactcagatttcaca
gttttagggaaaaaagctgtgaaaatttattgtgatgagattttctaggc
tagctggcaaatgtcccctttgtataaagtgttctgaggtggcgtgccag
caggcttcacacacacaggtggtgaggacatgaagtcacttactggcttt
cactgcagccagtcctgattccgaatggctggatgaagtcgtggggactc
actctccttcctcggtggctacttcagtctgtgaaaccagacttcaaatg
cactgtcgatgtatttatttatatctactagttatgaaagagcccaaact
gcatggtttactttataaagtgcagtgtaaggggacaa
gaattcatgtaagtgaatagcgtgtgacgcagagtaggtcctcaagaaac
tctggcttcgtcattgacctgtcaagagtttaaaatttataatggaacag
tctgttttcaggggttgtggtggtttgggttttgatgtgccatttgaata
gaaagtacatttggagagttttcaagcaaccattcatctagcggggattt
ttcacctaacaacagcttttgtgcaatgcttttacagtatacaaaagtta
actttgcattctctccgcaagggaactgagaaaatggatgagaggcaatt
agagacaaatacttctgaaacaatgttgctagatgaaattatttaagtgc
tgctaaggttggggctgcagctcagaggtagagtacctgcttgtctgtgt
gtagagctctgtgaattcatacagaaaatattgggttcaatttctaatac
ctccccaaagtttccttcctttctctctctctctctctctctctctctct
ctctctctctctctctcgcggtatctcactctctttctttctctctcttt
gtctctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85736964_85738062
seq2: B6Ng01-088A03.b_45_1132 (reverse)

seq1  TTGTCCCCCATACACTTGCAACTTTATAAAGTTAAACCATGCCAGTTTTG  50
      |||| |||| ||||| ||| ||||||||||| ||||||||| ||||||  
seq2  TTGT-CCCCTTACAC-TGC-ACTTTATAAAG-TAAACCATG-CAGTTT--  43

seq1  GGCCTCTTTCCATAACTAAGTAGATAATAAATAAATAACATCGACAGTGC  100
      || |||||| ||||||| ||||||| |||||||||| |||||||||||||
seq2  GGGCTCTTT-CATAACT-AGTAGAT-ATAAATAAAT-ACATCGACAGTGC  89

seq1  ATTTGAAGTCTGGTTTCACAGACTGAAGTAGCCACCGAGGAAGGAGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTCTGGTTTCACAGACTGAAGTAGCCACCGAGGAAGGAGAGTG  139

seq1  AGTCCCCACGACTTCATCCAGCCATTCGGAATCAGGACTGGCTGCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCACGACTTCATCCAGCCATTCGGAATCAGGACTGGCTGCAGTGA  189

seq1  AAGCCAGTAAGTGACTTCATGTCCTCACCACCTGTGTGTGTGAAGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTAAGTGACTTCATGTCCTCACCACCTGTGTGTGTGAAGCCTGC  239

seq1  TGGCACGCCACCTCAGAACACTTTATACAAAGGGGACATTTGCCAGCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACGCCACCTCAGAACACTTTATACAAAGGGGACATTTGCCAGCTAG  289

seq1  CCTAGAAAATCTCATCACAATAAATTTTCACAGCTTTTTTCCCTAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAATCTCATCACAATAAATTTTCACAGCTTTTTTCCCTAAAACT  339

seq1  GTGAAATCTGAGTAACCCTGGGGAGGGGGCGGGGTTGTTGTTGTTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTGAGTAACCCTGGGGAGGGGGCGGGGTTGTTGTTGTTGTTTG  389

seq1  TTTTGTTTTATTTTTTTAAAGATGCTTTATTCGGTTACTTTAAAGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTATTTTTTTAAAGATGCTTTATTCGGTTACTTTAAAGAAAAC  439

seq1  CAATTCCAAGATCCAAGCCACAGACCTCGGAGAGAGTCTAGTCTCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAAGATCCAAGCCACAGACCTCGGAGAGAGTCTAGTCTCTGGGA  489

seq1  AGGATTTTCTAGCTTTTTAAAGAACTTCACCTTGTCCCCACCGTTTGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCTAGCTTTTTAAAGAACTTCACCTTGTCCCCACCGTTTGACG  539

seq1  ATTTGCTTGGGAAGAAGGTCTCTAGAAGACACAGATGCTCCCTGGCCTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGGGAAGAAGGTCTCTAGAAGACACAGATGCTCCCTGGCCTCG  589

seq1  GTCTAGACAGAGGTGCTTAACCTGTGGGTTGCGACCCCTTTACAGTCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGACAGAGGTGCTTAACCTGTGGGTTGCGACCCCTTTACAGTCGCC  639

seq1  TATCAGATATTTACATTATGATCTATGCAGTATCAAAATGACAGTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATATTTACATTATGATCTATGCAGTATCAAAATGACAGTTATGA  689

seq1  AGAAACAATGAAAATCATTTCATGGCTGGGGGCCACCACTACACGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATGAAAATCATTTCATGGCTGGGGGCCACCACTACACGAGGAG  739

seq1  CTGTGTTAAAGGGTCACAGCATCAGGAAGGCTGAGAGGCGCTGGTCTCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAAAGGGTCACAGCATCAGGAAGGCTGAGAGGCGCTGGTCTCGG  789

seq1  AGAATTAGATCTGTAACTGCCTGGACGGTTCAAAAGTGCACGGGTTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGATCTGTAACTGCCTGGACGGTTCAAAAGTGCACGGGTTCAAA  839

seq1  TCTGGGCCCAGTGGTTTTCTAGTTTGAGGATTTTAAGTTTACTTGATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCCAGTGGTTTTCTAGTTTGAGGATTTTAAGTTTACTTGATTTC  889

seq1  TTTGGGTTTTAGCTTTTTTAACTACAAAACACAAATACTCAGACTGTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTTAGCTTTTTTAACTACAAAACACAAATACTCAGACTGTCTC  939

seq1  ATAGAACTGTTGCAAAGAAGAAACCAACTTAATTTGAAAATCATTGCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTGTTGCAAAGAAGAAACCAACTTAATTTGAAAATCATTGCTAC  989

seq1  AATACCTGCCTAGGATATTTTATTAGAAGTAATAGGTACAATGATAATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGCCTAGGATATTTTATTAGAAGTAATAGGTACAATGATAATTA  1039

seq1  TTATTTTTATATCAGCAACTAATCATCTACGCAAAGGTGATGAGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATATCAGCAACTAATCATCTACGCAAAGGTGATGAGAATTC  1088

seq1: chr17_85578373_85578933
seq2: B6Ng01-088A03.g_67_627

seq1  GAATTCATGTAAGTGAATAGCGTGTGACGCAGAGTAGGTCCTCAAGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAAGTGAATAGCGTGTGACGCAGAGTAGGTCCTCAAGAAAC  50

seq1  TCTGGCTTCGTCATTGACCTGTCAAGAGTTTAAAATTTATAATGGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCGTCATTGACCTGTCAAGAGTTTAAAATTTATAATGGAACAG  100

seq1  TCTGTTTTCAGGGGTTGTGGTGGTTTGGGTTTTGATGTGCCATTTGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCAGGGGTTGTGGTGGTTTGGGTTTTGATGTGCCATTTGAATA  150

seq1  GAAAGTACATTTGGAGAGTTTTCAAGCAACCATTCATCTAGCGGGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACATTTGGAGAGTTTTCAAGCAACCATTCATCTAGCGGGGATTT  200

seq1  TTCACCTAACAACAGCTTTTGTGCAATGCTTTTACAGTATACAAAAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTAACAACAGCTTTTGTGCAATGCTTTTACAGTATACAAAAGTTA  250

seq1  ACTTTGCATTCTCTCCGCAAGGGAACTGAGAAAATGGATGAGAGGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCATTCTCTCCGCAAGGGAACTGAGAAAATGGATGAGAGGCAATT  300

seq1  AGAGACAAATACTTCTGAAACAATGTTGCTAGATGAAATTATTTAAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAATACTTCTGAAACAATGTTGCTAGATGAAATTATTTAAGTGC  350

seq1  TGCTAAGGTTGGGGCTGCAGCTCAGAGGTAGAGTACCTGCTTGTCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGTTGGGGCTGCAGCTCAGAGGTAGAGTACCTGCTTGTCTGTGT  400

seq1  GTAGAGCTCTGTGAATTCATACAGAAAATATTGGGTTCAATTTCTAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCTCTGTGAATTCATACAGAAAATATTGGGTTCAATTTCTAATAC  450

seq1  CTCCCCAAAGTTTCCTTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAAAGTTTCCTTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  500

seq1  CTCTCTCTCTCTCTCTCTTGGTTTCTCTCTCTCTTTCTTTCTCTCTCTTT  550
      |||||||||||||||||  ||| |||| ||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCGCGGTATCTCACTCTCTTTCTTTCTCTCTCTTT  550

seq1  CTCTCTTTCTT  561
       ||||||||||
seq2  GTCTCTTTCTT  561