BAC Information

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BAC

Clone NameB6Ng01-088O19
Chromosome17 (Build37)
Map Location 13,565,086 - 13,739,711
singlet/doubletdoublet
Overlap geneLOC100041352, LOC667372, LOC667384, Smok4a
Upstream genePlg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359
Downstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O19.bB6Ng01-088O19.g
ACCDH901643DH901644
length908712
definitionDH901643|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O19, 5' end.DH901644|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,565,086 - 13,565,992)(13,738,986 - 13,739,711)
sequence
gaattcataaattgtaatataggacaatacccagacataatgaatccatt
gctgctcaggcttctctcttggctgtgtggaccctggcccagccacaggc
ctgctgaatctagctgagtcttcatatgcaagccagtgctattatggtct
ttgttctacccctgaagtttttataggctagcgagcacaggtgtggacag
gagagaaattactttttcagtaacttttggcatacactctgcattgaaaa
attacacttgcttgttcacaagtgccctatggggttgttggtggatggta
gccaggtctgatgaaaaacataaaagggtttgataggcagatgtggtctt
tgaatcttggctggtctgtgcggaatgtatctgaaatgcatcacttaact
gtatatcagtttctgagttctatcactgtccgtatgtacagctcacattc
tccagagcaccctcacgtgaaagttcgaaaagaaaacgtcacagtcccct
cttgccatttctgggtgttcagcaaagttcagcaaagaccattttgcatt
gattctgcaccaggcagtcacaggattgttgaggttttgtcggttgctat
gtgctgtaatgctcaattctataacccaagtctacgtgcctcaaaatgag
tgaattctcttgtgtgccagcttctgttgtgcaaactttgtgccttagtt
taaagctattggttaataaagatgccaacagctcatagctgggagagata
tgtggaattttggttcctggacttgaggtctgaggcagataccatgaggg
agaggagaagaggaaggaaaaagacaccatggggtcatgagagtcagcct
gttggaatagaatcatggtggaagatgggattatttgatagggaagtaga
ttattagc
gaattcataaaagctctctgctgcattctttcgagctatttccagggcca
cggcacttctatctaatattgtcagaggctgtgttgcttcatgcaagaag
cgaggggcagatggtataaggttgacagatggagatggaaccagacggac
ttaatttgatactttattttcatctcctttatgtaaaaatgatgttctag
caaaagataatcacttaggatctcaaaacctcagacagaaaacaaaaggg
agcctgagagacgagactgtacagccgagctaacctgtgtcccacctgaa
gagacagaaggaccgagagatgggggtgggggagattgtgcaaaagaaca
agcactcatcacagaagctagatggatcaacagctgatctgtgtgcaagt
ttagtttggaaataaaaaagatgtttcagaatgtctgggaagggaaggtg
aacacagcagcttacataagaaagaaaaaggccagggctggagaaatagc
acagcagtttaagagcactgactgctcttccagaggtcctgagttcaatt
cccagcaaccacatggtggctcacaaccatctatagtgggatctgatgcc
ctcttctggtgtgtctgaagacagctacagtgtactcatataaaaaaaat
caaataaaataagagcagttgttttctcctttaagaaagaaagaagaaaa
gaaaaggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13565086_13565992
seq2: B6Ng01-088O19.b_48_955

seq1  GAATTCATAAATTGTAATATAGGACAATACCCAGACATAATGAATCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATTGTAATATAGGACAATACCCAGACATAATGAATCCATT  50

seq1  GCTGCTCAGGCTTCTCTCTTGGCTGTGTGGACCCTGGCCCAGCCACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCAGGCTTCTCTCTTGGCTGTGTGGACCCTGGCCCAGCCACAGGC  100

seq1  CTGCTGAATCTAGCTGAGTCTTCATATGCAAGCCAGTGCTATTATGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATCTAGCTGAGTCTTCATATGCAAGCCAGTGCTATTATGGTCT  150

seq1  TTGTTCTACCCCTGAAGTTTTTATAGGCTAGCGAGCACAGGTGTGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTACCCCTGAAGTTTTTATAGGCTAGCGAGCACAGGTGTGGACAG  200

seq1  GAGAGAAATTACTCCTTCAGTAACTTTTGGCATACACTCTGCATTGAAAA  250
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATTACTTTTTCAGTAACTTTTGGCATACACTCTGCATTGAAAA  250

seq1  ATTACACTTGCTTGTTCACAAGTGCCCTATGGGGTTGTTGGTGGATGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTTGCTTGTTCACAAGTGCCCTATGGGGTTGTTGGTGGATGGTA  300

seq1  GCCAGGACTGATGAAAAACATAAAAGGGTTTGATAGGCAGATGTGATCTT  350
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCAGGTCTGATGAAAAACATAAAAGGGTTTGATAGGCAGATGTGGTCTT  350

seq1  TGAATCTTGGCTGGTCTGTGCGGAATGTATCTGAAATGCATCACTTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTGGCTGGTCTGTGCGGAATGTATCTGAAATGCATCACTTAACT  400

seq1  GTATATCAGTTTCTGAGTTCTATCACTGTCCGTATGTACAGCTCACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCAGTTTCTGAGTTCTATCACTGTCCGTATGTACAGCTCACATTC  450

seq1  TCCAGAGCACCCTCACGTGAAAGTTCGAAAAGAAAACGTCACAGTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCACCCTCACGTGAAAGTTCGAAAAGAAAACGTCACAGTCCCCT  500

seq1  CTTGCCATTTCTGGGTGTTCAGCAAAGTTCAGCAAAGACCATTTTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTTCTGGGTGTTCAGCAAAGTTCAGCAAAGACCATTTTGCATT  550

seq1  GATTCTGCACCAGGCAGTCACAGGATTGTTGAGGTTTTGTCGGTTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCACCAGGCAGTCACAGGATTGTTGAGGTTTTGTCGGTTGCTAT  600

seq1  GTGCTGTAATGCTCAATGCTATAACCCAAGTCTATGTGCCTCAAAATGAG  650
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GTGCTGTAATGCTCAATTCTATAACCCAAGTCTACGTGCCTCAAAATGAG  650

seq1  TGAATTCTCTTGTGTGCCAGCTTCTGTTGTGCAAACTTTGTGCCTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCTTGTGTGCCAGCTTCTGTTGTGCAAACTTTGTGCCTTAGTT  700

seq1  TAAAGCTATTGGTTAATAAAGATGCCAACAGCTCATAGCTGGGAGAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATTGGTTAATAAAGATGCCAACAGCTCATAGCTGGGAGAGATA  750

seq1  TGTGGAATTTTGGTTCCTGGACTTGAGGTCTGAGGCAGATACCATGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATTTTGGTTCCTGGACTTGAGGTCTGAGGCAGATACCATGAGGG  800

seq1  AGAGGAGAAGAGGAAGGAAAAAGACACCATGGGGTCATGAGAGTCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAAGAGGAAGGAAAAAGACACCATGGGGTCATGAGAGTCAGCCT  850

seq1  GTTGGAATAGAATCATGGTGGAAGATGGAATTA-TTGATAGGGAAGTAGA  899
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GTTGGAATAGAATCATGGTGGAAGATGGGATTATTTGATAGGGAAGTAGA  900

seq1  TAATTAGC  907
      | ||||||
seq2  TTATTAGC  908

seq1: chr17_13738986_13739711
seq2: B6Ng01-088O19.g_67_778 (reverse)

seq1  CCCTTCC-TTTCTTTTCTTCTTTCTTTTTTAAAAGAG-AAACAACTGCTC  48
      ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||
seq2  CCCTTCCTTTTCTTTTCTTCTTTCTTTCTTAAAGGAGAAAACAACTGCTC  50

seq1  TTAT----TTTGTTTTTGTTTATATGAGTACACTATAGCTG---TCAGAC  91
      ||||    |||| |||| |||||||||||||||| ||||||   ||||||
seq2  TTATTTTATTTGATTTTTTTTATATGAGTACACTGTAGCTGTCTTCAGAC  100

seq1  ACACCAGAAGAGGGCATCAGATCCCACTACAGATGGTTGTGAGCCACCAT  141
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACACCAGAAGAGGGCATCAGATCCCACTATAGATGGTTGTGAGCCACCAT  150

seq1  GTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTC  200

seq1  TT-AACTGCTGTGCTATCTCTCCAGCCCTGGCCTTTTTCTTTCTTATGTA  240
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAAACTGCTGTGCTATTTCTCCAGCCCTGGCCTTTTTCTTTCTTATGTA  250

seq1  AGCTGCTGTGTTCACCTTCCCTTCCCAGAGATTCTGAAACATCTTTTTTA  290
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCTGCTGTGTTCACCTTCCCTTCCCAGACATTCTGAAACATCTTTTTTA  300

seq1  TTTCCAAACTAAACTTGCACACAGATCAGCTGCTGATCCGTCTAGCTTCT  340
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TTTCCAAACTAAACTTGCACACAGATCAGCTGTTGATCCATCTAGCTTCT  350

seq1  GTGATGAGTGCCGTTCCCAATAGAAAAGCCAAAGCTTGTTCTTTTGCACA  390
      |||||||||                        |||||||||||||||||
seq2  GTGATGAGT------------------------GCTTGTTCTTTTGCACA  376

seq1  ATCTCCCCCACCCCCATCTCTCGGTCCTTCTGTCTCTTCAGGTGGGACAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCCACCCCCATCTCTCGGTCCTTCTGTCTCTTCAGGTGGGACAC  426

seq1  AGGTTACCTCAGCTGTATGGTCTCATCTCTCAGGCTCCCTTTTGTTTTCT  490
      |||||| ||| ||||||  ||||| |||||||||||||||||||||||||
seq2  AGGTTAGCTCGGCTGTACAGTCTCGTCTCTCAGGCTCCCTTTTGTTTTCT  476

seq1  GGCTGAGGTTTTGAGATCCTAAGTGATTATCTTTTGCTAGAACATCATTT  540
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGTTTTGAGATCCTAAGTGATTATCTTTTGCTAGAACATCATTT  526

seq1  TTACATAAAGGAGATGAAAATAAAGTATCAAATTAAGTCCGTCTGGTTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAAGGAGATGAAAATAAAGTATCAAATTAAGTCCGTCTGGTTCC  576

seq1  ATCTCCATCTGTCAACATTATACCATCTGCCCCTCGCTTCTTGCATGAAG  640
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCTCCATCTGTCAACCTTATACCATCTGCCCCTCGCTTCTTGCATGAAG  626

seq1  CAACACAGCCTCTGACAATATTAGATAGAAGTGCCGTGGCCCTGGAAATA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGCCTCTGACAATATTAGATAGAAGTGCCGTGGCCCTGGAAATA  676

seq1  GCTCGAAAGAATGCAGCAGAGAGCTTTTATGAATTC  726
      ||||||||||||||||||||||||||||||||||||
seq2  GCTCGAAAGAATGCAGCAGAGAGCTTTTATGAATTC  712