BAC Information

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BAC

Clone NameB6Ng01-089A20
Chromosome17 (Build37)
Map Location 58,503,478 - 58,504,649
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A20.bB6Ng01-089A20.g
ACCDH901739DH901740
length1,2491,150
definitionDH901739|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A20, 5' end.DH901740|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttagggatatttgattccctggtgtctaacttcttgagatctt
tgtatatactgaacattagccctctattggatgtaggattggtaaagatc
ttttcccaatccgttggttgctgttttgtccaactggcagtgtcctttgc
cttacagaagctttagaattttatgaggtcccattttctattgttgatct
tagagtataaggcattggtgttctgttcaggtaattttctcatatagcca
agtgttggaggctcttccccactttctcttctattagtttcagtgtatct
ggttttatgtggaggtcattgataaacttagatttgagctttgttcaagg
agataaaaatggattgatttgcattcttctacatgctgaccaccagttga
aacagcaccgtttgtttaaaatgttgtcttttttccactggatggtttta
gctcctttgtcaaatatcaagcgaccttaggtgtatgggatcatttctgg
gtcttcaattctatcccatttatcctcctgcttttctctctaccaataac
atacagttattatcactaatgctctgtaatgcagcttaaagtcaggaatg
gtaattcccatagaagttattttattgttgagaatagtttttgctatcct
aggtttttgttattccaaatgaatttgcaaattactctaaccctttgaag
aattgagttggaattttgatggtaattgcattgaatctgtagattgcttt
cagcaagttggccatttttactatattaatcctgccaatccatgagcatg
ggagatattccaacttctgggaccttctttcaattttttttcttcagaga
cttgaagttcttgtcacacagatctttcacttgtttggttagaagtcaca
ataagatattttatattatttgtgactatgatgaaggatgtcatttcact
aatttctttctcattctgttatccctttgagtttaggaaggctactgatt
tgtttgagttaattttatatcagccacttttcagaaggtttgttttgttt
tatcaagttaggagtccctgatggacttcagaaatcttaaggaaatggaa
tggaactggaaaaatcatcctgaggtgtggtactccaatccaaagtacaa
caacggatagtatctcttggtagatagatattagctctaggcgtgggaaa
tcccactataaaaatcatgatgctccactcattatagcccatgccgaga
gaattccagtgaggagcctgccctgtgtgagactgtaagctttttaccca
tgtgattgccttaggctttctcaaaacctggcctgtggatttgttttatt
ttcctacagatggaccagcaactcttcagctatactttctcactagaatc
tgagttccagagagcaaggtcgctcgtcctaggcaaagtcacaggtttgt
ttttgcattctatacttctcactggatgttgttaaactcaataaaattgt
ctcttctgtttgtgtgttcagtgattcacacaggaagacattgcttctat
ctgttctcttgatacaggttttgaaatgagatatgctaagaaagaaatgt
gctaatggtgcaggatgccatccatgtctgttttgttgactggttagttc
atttcttgtaattattaagtttgtaaattgttagtaacccaggtagaagt
gtgatcaagtaataaggcaagttaacatattttaatttaaattatataat
tatttttcttttagatagtcaactttttatttgcgttcccttagctttaa
actaaaggaatgaagtaggaagctggactgcagaatgaggattcaaaact
cacgctggacgcatggattctcctcttgttttcacatcagctttgtgaat
tttcacttgttgtttcagaatatttattgcctgtacaacactaaacttct
tttgctttcctgaataattggctattgaatgatatttgatctttatcaat
gccttttagagcttgaatgtgatgtggctacaactaatgtagacaacagg
cctttgttttggccacagtttatgccctagctttcctcatttttttttcc
ttttaatattttctctttataaagctttatatatgatgttgaatagaata
cacagttgagttgtatgttaagtattgttcatgtgtacatgtgtgtgtat
gtacacattcacacatatgaccatggacatgtctatggtattgtatgctt
tggagatcacacatctgctgtgttgttctaactgttttaagcaggatctc
tgttctgtgcatgtacacgagtgcttatgcatacgatttgtgtttacaga
taatagtaagatcttcttcgaactgaaaatatgtatttggactctgtctg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58503478_58504649
seq2: B6Ng01-089A20.g_68_1217

seq1  GAATTCCAGTGAGGAGCCTGCCCTGTGTGAGACTGTAAGCTTTTTACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAGGAGCCTGCCCTGTGTGAGACTGTAAGCTTTTTACCCA  50

seq1  TGTGATTGCCTTAGGCTTTCTCAAAACCTGGCCTGTGGATTTGTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGCCTTAGGCTTTCTCAAAACCTGGCCTGTGGATTTGTTTTATT  100

seq1  TTCCTACAGATGGACCAGCAACTCTTCAGCTATACTTTCTCACTAGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGATGGACCAGCAACTCTTCAGCTATACTTTCTCACTAGAATC  150

seq1  TGAGTTCCAGAGAGCAAGGTCGCTCGTCCTAGGCAAAGTCACAGGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGAGAGCAAGGTCGCTCGTCCTAGGCAAAGTCACAGGTTTGT  200

seq1  TTTTGCATTCTATACTTCTCACTGGATGTTGTTAAACTCAATAAAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTCTATACTTCTCACTGGATGTTGTTAAACTCAATAAAATTGT  250

seq1  CTCTTCTGTTTGTGTGTTCAGTGATTCACACAGGAAGACATTGCTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTTTGTGTGTTCAGTGATTCACACAGGAAGACATTGCTTCTAT  300

seq1  CTGTTCTCTTGATACAGGTTTTGAAATGAGATATGCTAAGAAAGAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTTGATACAGGTTTTGAAATGAGATATGCTAAGAAAGAAATGT  350

seq1  GCTAATGGTGCAGGATGCCATCCATGTCTGTTTTGTTGACTGGTTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGGTGCAGGATGCCATCCATGTCTGTTTTGTTGACTGGTTAGTTC  400

seq1  ATTTCTTGTAATTATTAAGTTTGTAAATTGTTAGTAACCCAGGTAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTAATTATTAAGTTTGTAAATTGTTAGTAACCCAGGTAGAAGT  450

seq1  GTGATCAAGTAATAAGGCAAGTTAACATATTTTAATTTAAATTATATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAAGTAATAAGGCAAGTTAACATATTTTAATTTAAATTATATAAT  500

seq1  TATTTTTCTTTTAGATAGTCAACTTTTTATTTGCGTTCCCTTAGCTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTTTAGATAGTCAACTTTTTATTTGCGTTCCCTTAGCTTTAA  550

seq1  ACTAAAGGAATGAAGTAGGAAGCTGGACTGCAGAATGAGGATTCAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGAATGAAGTAGGAAGCTGGACTGCAGAATGAGGATTCAAAACT  600

seq1  CACGCTGGACGCATGGATTCTCCTCTTGTTTTCACATCAGCTTTGTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGGACGCATGGATTCTCCTCTTGTTTTCACATCAGCTTTGTGAAT  650

seq1  TTTCACTTGTTGTTTCAGAATATTTATTGCCTGTACAACACTAAACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTGTTGTTTCAGAATATTTATTGCCTGTACAACACTAAACTTCT  700

seq1  TTTGCTTTCCTGAATAATTGGCTATTGAATGATATTTGATCTTTATCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCCTGAATAATTGGCTATTGAATGATATTTGATCTTTATCAAT  750

seq1  GCCTTTTAGAGCTTGAATGTGATGTGGCTACAACTAATGTAGACAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAGAGCTTGAATGTGATGTGGCTACAACTAATGTAGACAACAGG  800

seq1  CCTTTGTTTTGGCCACAGTTTATGCCCTAGCTTTCCTCA-TTTTTTTTCC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTTGTTTTGGCCACAGTTTATGCCCTAGCTTTCCTCATTTTTTTTTCC  850

seq1  TTTTAATAATTTTCTCTTTATAAAGCCTTATATATGATGTTGAATAGAAT  899
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTAAT-ATTTTCTCTTTATAAAGCTTTATATATGATGTTGAATAGAAT  899

seq1  ACACAGTTGAGTTGTATGTTAAGTATTGTTCATGTGTACATGTGTGGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACACAGTTGAGTTGTATGTTAAGTATTGTTCATGTGTACATGTGT-GTGT  948

seq1  ATGTACACATTCACACATATGACCATGGACATGTCTATGGTATGGTATGC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGTACACATTCACACATATGACCATGGACATGTCTATGGTATTGTATGC  998

seq1  TTTGGAGATCAACAACATCTGCTGTTGGTTGTTCTAACTTGTTTTAGGCA  1049
      |||||||||||   |||||||||||  ||||||||||| ||||||| |||
seq2  TTTGGAGATCA--CACATCTGCTGT--GTTGTTCTAAC-TGTTTTAAGCA  1043

seq1  GGATCTCCTGTTCTGTGCATTGTACACGAGTGGCTTATGGCATACAGAAT  1099
      |||||| |||||||||||| ||||||||||| |||||| ||||||   ||
seq2  GGATCT-CTGTTCTGTGCA-TGTACACGAGT-GCTTAT-GCATAC--GAT  1087

seq1  CTGTGTTTTACAGATTAGTAGTAAAGATCTTCTTCAGACTTTGAAATTAT  1149
       |||| |||||||| || |||| ||||||||||||  ||  ||||| |||
seq2  TTGTG-TTTACAGA-TAATAGT-AAGATCTTCTTCGAAC--TGAAAATAT  1132

seq1  TTGTTATTTTGGACCTCTGTCTG  1172
       |     |||||| |||||||||
seq2  GT----ATTTGGA-CTCTGTCTG  1150