BAC Information

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BAC

Clone NameB6Ng01-089D03
Chromosome17 (Build37)
Map Location 55,589,212 - 55,589,931
singlet/doubletsinglet
Overlap geneSt6gal2
Upstream geneLOC240117, EG629178, LOC100043833, LOC100043485, LOC677496
Downstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D03.bB6Ng01-089D03.g
ACCDH901835DH901836
length832728
definitionDH901835|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D03, 5' end.DH901836|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gtactgcagagcaatagtggtaaaatctgcatgatactgatacagagaaa
gataggtagaccgatggaatagaattgaagacccagaaatgaacccacac
acctatggtcacttgatctttgacaagggagctaaaaccatccagtggaa
aaaaagacagcattttcaacaaatggtactggcacaactggtgtttatca
tgtagaagaattctaattgattcattcttatctccatgtactaagctcaa
gtctaagtggatcaaggaactccacataaaaacagagacaatgaaactta
tagaagagaaagtggggaaaagcctcaaagatatgggcacaagggaaaaa
ttcctgagcagaacagcaacagcttgtgctttaagatcaagaatccacaa
atgggacctcataaaattgcaaagcttctgtaaagcaacaaactctgtca
atcagacaaaaaggccaccaacagattgggaaagatctttaccaatccta
aatctgataggggactaatatccaatatatataaagaactcaagaagata
gaccccagaaaatcatataaccctattaaaaatgaggtacagagctaaac
aaaagaattctcaactgaggaataccaaatggctaagaatcacctgaaaa
agtgttcaacatccttattcatcagggaaatgaaaaatcaaaaaccacca
tgagattccacctcacactagtcacaattggttaagataaaaaattcagg
tgacagcagatgctgggggaggcttgtggagaagggggacacttctctat
tgttggtggggattgcaaactggtacaagcac
gaattcagacaagcagcattaaaatgaaactctacctgatattaagcaag
gcacactgagtgaaattctcaggccgagattgtgttgaaatttgagagaa
ttgggcatttgctttgcgttgtcaggtagtgacgagagcatgttcggaga
gtagtcttttgagacatttagaggtattttgggtaaagcatcagcaagtt
cattgtggcaggccctgcaatgttgattatcagactgttttcataacttt
acacttcgcacgttgagttcttctcagtgctgcttgtagcttgagcccga
taggagagcgctttattaagtttccaacaattcatcttgcctgtttgaat
tgtacagatttttcaagtagaggttcttgcttctaaaaggacttggcttt
aaattaaattgtggtaaggtgagcctcttagataatccaagtagtttatt
atttagaaatatatctgagaagtagcttcctggaaagcacggtggtaatg
atttttatgaatcgttctatatgactgtggatgaaaactttgataagata
acatggaatttgtttatggtggctcactcaaatgtaagatggatctatag
tatataattaaatgaatgaactcatttttgctattgagggagtgaactat
ataaactatggtttgtatatatatatatatgtatgtatatatatatatat
atatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55589212_55589931
seq2: B6Ng01-089D03.g_70_789

seq1  GAATTCAGACAAGCAGCATTAAAATGAAACTCTACCTGATATTAAGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACAAGCAGCATTAAAATGAAACTCTACCTGATATTAAGCAAG  50

seq1  GCACACTGAGTGAAATTCTCAGGCCGAGATTGTGTTGAAATTTGAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTGAGTGAAATTCTCAGGCCGAGATTGTGTTGAAATTTGAGAGAA  100

seq1  TTGGGCATTTGCTTTGCGTTGTCAGGTAGTGACGAGAGCATGTTCGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCATTTGCTTTGCGTTGTCAGGTAGTGACGAGAGCATGTTCGGAGA  150

seq1  GTAGTCTTTTGAGACATTTAGAGGTATTTTGGGTAAAGCATCAGCAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTTTGAGACATTTAGAGGTATTTTGGGTAAAGCATCAGCAAGTT  200

seq1  CATTGTGGCAGGCCCTGCAATGTTGATTATCAGACTGTTTTCATAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGCAGGCCCTGCAATGTTGATTATCAGACTGTTTTCATAACTTT  250

seq1  ACACTTCGCACGTTGAGTTCTTCTCAGTGCTGCTTGTAGCTTGAGCCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCGCACGTTGAGTTCTTCTCAGTGCTGCTTGTAGCTTGAGCCCGA  300

seq1  TAGGAGAGCGCTTTATTAAGTTTCCAACAATTCATCTTGCCTGTTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGCGCTTTATTAAGTTTCCAACAATTCATCTTGCCTGTTTGAAT  350

seq1  TGTACAGATTTTTCAAGTAGAGGTTCTTGCTTCTAAAAGGACTTGGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGATTTTTCAAGTAGAGGTTCTTGCTTCTAAAAGGACTTGGCTTT  400

seq1  AAATTAAATTGTGGTAAGGTGAGCCTCTTAGATAATCCAAGTAGTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTGTGGTAAGGTGAGCCTCTTAGATAATCCAAGTAGTTTATT  450

seq1  ATTTAGAAATATATCTGAGAAGTAGCTTCCTGGAAAGCACGGTGGTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAATATATCTGAGAAGTAGCTTCCTGGAAAGCACGGTGGTAATG  500

seq1  ATTTTTATGAATCGTTCTATATGACTGTGGATGAAAACTTTGATAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGAATCGTTCTATATGACTGTGGATGAAAACTTTGATAAGATA  550

seq1  ACATGGAATTTGTTTATGGTGGCTCACTCAAATGTAAGATGGATCTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAATTTGTTTATGGTGGCTCACTCAAATGTAAGATGGATCTATAG  600

seq1  TATATAATTAAATGAATGAACTCATTTTTGCTATTGAGGGAGTGAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTAAATGAATGAACTCATTTTTGCTATTGAGGGAGTGAACTAT  650

seq1  ATAAACTATGGTTTGTATATATATATATATGTATGTATATATATATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATGGTTTGTATATATATATATATGTATGTATATATATATATAT  700

seq1  ATATATATATATATATATAT  720
      ||||||||||||||||||||
seq2  ATATATATATATATATATAT  720