BAC Information

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BAC

Clone NameB6Ng01-089I03
Chromosome17 (Build37)
Map Location 47,717,158 - 47,751,827
singlet/doubletdoublet
Overlap geneCcnd3, Bysl, Trfp
Upstream genePtk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn
Downstream geneLOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089I03.bB6Ng01-089I03.g
ACCDH902068DH902069
length1,155468
definitionDH902068|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I03, 5' end.DH902069|Mus musculus domesticus DNA, BAC clone: B6Ng01-089I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,750,675 - 47,751,827)(47,717,158 - 47,717,631)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaaacc
acaaactctagcggggttaagggcataacaaaagccaggcagtggtgggt
gcacacctttaatcccagcgctcaggagtcaggaggcagaggcagtctga
tctctgtgatcccagcctagtctacaaagagagagttgcaggatagccag
ggatacacatagaaactctgtctcaaaaacacaagaacaaaaaaaagaaa
taaaagtctaacaagaggctggtgagatggctcaatggttctgaccactc
acttctgacagaacagagttcaccatccacactgggttgtccacaagggc
ctgtaactccagctcctttctgacttccctccacagcacccagccccaga
aataaaataaagtcaggtgtaatgatgtgcatttagttccagcactagga
gatggatctctgtgaatctgaggccactcccatctacagagtgagttcca
ggacagctagagctacatagtgagaccctgtctaaaaacaaacaaaataa
aatataaataaatccttttttaaaaaaaaagtgtagtgatgggaagagga
gaaagactgcaggattggggagcaattcagggccttccctgtactgccct
ggcctctctgctgccccctgctgaattaggcaggctctacactgaacctc
caactcccatcccttctgtctacactgccaattcacatctttcatcgctt
tgaaaatccagtttaaaatatgccagctctcagagccactcaaagctgac
cttattctgtctcagttatacactgtaattacatacctggatcataccac
atcaagttgtactgccttgaaactttgcaaaggcagccaaagactatgtg
agtgagctgccaagatggctcagcgagcaagagcactgactgctcttctg
aaaggtactgagttcaaatcccagcaaccacaaggtggctcacaatcacg
cataatgagatttgatgccctcttctggttgtttctgaagacagtaacag
tgtacttattaaataaattttggacctggagcaagcacgggcggaccgga
gcagaggtcctaaattcatttcccacaaccacatggaagactcaaaccaa
tctgt
acttggtggcagacttttgagatctctgcagtgtctggcaggctctggtg
atgcacctgtgtagtaatcccagcacttgggtagaagcaggagggttgag
agctcactgaattgccagagatcctgtttcaaacaggcaagcagaagtct
ggatggacacacacaggaggagtaggacctgtccccaccaggcagcaacc
atgtcaggaaatcaaagcaaggaagaaatccaagatggtaccagagcaga
cctgatgtgatcttctcctttcctgggacattggtctcaggggacacctg
aggtgctgaccacatttacccactagatcagcagagtgagagttctcagg
agagtctggcttcagctcagcatgcactagtttttttaattttgtagtga
cttttgaacagagagtgagtgggagagatttaaagtaagtgtgtgtgtgt
gtgtgtgtatgtgtaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47750675_47751827
seq2: B6Ng01-089I03.b_46_1200 (reverse)

seq1  ACAGATGGTTGTGAGTCTT-CATGTGGTTGTTGGGAATTGAATTTAGGAC  49
      |||||| | | |||||||| |||||||||| |||||| ||||||||||||
seq2  ACAGATTGGTTTGAGTCTTCCATGTGGTTG-TGGGAAATGAATTTAGGAC  49

seq1  CTCTGCTCCGGT-CGGCCGTGCTTGCT-CAGGTCCAAAGATTTATTTATT  97
      |||||||||||| || ||||||||||| |||||||||| ||||||||| |
seq2  CTCTGCTCCGGTCCGCCCGTGCTTGCTCCAGGTCCAAA-ATTTATTTAAT  98

seq1  AAGTACACTGTTACTGTCTTCAGACAC-ACCAGAAGAGGGCATCAAATCT  146
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  AAGTACACTGTTACTGTCTTCAGAAACAACCAGAAGAGGGCATCAAATCT  148

seq1  CATTATGCGTGATTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCGTGATTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTCAG  198

seq1  TACC-TTCAGAAGAGCAGTCAGTGCTCTTGCTCGCTGAGCCATCTTGGCA  245
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCAGAAGAGCAGTCAGTGCTCTTGCTCGCTGAGCCATCTTGGCA  248

seq1  GCTCACTCACATAGTCTTTGGCTGCCTTTGCAAAGTTTCAAGGCAGTACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCACATAGTCTTTGGCTGCCTTTGCAAAGTTTCAAGGCAGTACA  298

seq1  ACTTGATGTGGTATGATCCAGGTATGTAATTACAGTGTATAACCTGAGAC  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTGATGTGGTATGATCCAGGTATGTAATTACAGTGTATAA-CTGAGAC  347

seq1  AGAATAAGGTCAGCTTTGAGTGGCTCTGAGAGCTGGCATATTTTAAACTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGTCAGCTTTGAGTGGCTCTGAGAGCTGGCATATTTTAAACTG  397

seq1  GATTTTCAAAGCGATGAAAGATGTGAATTGGCAGTGTAGACAGAAGGGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCAAAGCGATGAAAGATGTGAATTGGCAGTGTAGACAGAAGGGAT  447

seq1  GGGAGTTGGAGGTTCAGTGTAGAGCCTGCCTAATTCAGCAGGGGGCAGCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGAGGTTCAGTGTAGAGCCTGCCTAATTCAGCAGGGGGCAGCA  497

seq1  GAGAGGCCAGGGCAGTACAGGGAAGGCCCTGAATTGCTCCCCAATCCTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCAGGGCAGTACAGGGAAGGCCCTGAATTGCTCCCCAATCCTGC  547

seq1  AGTCTTTCTCCTCTTCCCATCACTACACTTTTTTTTTAAAAAAGGATTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCTCCTCTTCCCATCACTACACTTTTTTTTTAAAAAAGGATTTA  597

seq1  TTTATATTTTATTTTGTTTGTTTTTAGACAGGGTCTCACTATGTAGCTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTATTTTGTTTGTTTTTAGACAGGGTCTCACTATGTAGCTCT  647

seq1  AGCTGTCCTGGAACTCACTCTGTAGATGGGAGTGGCCTCAGATTCACAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCTGGAACTCACTCTGTAGATGGGAGTGGCCTCAGATTCACAGA  697

seq1  GATCCATCTCCTAGTGCTGGAACTAAATGCACATCATTACACCTGACTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCTCCTAGTGCTGGAACTAAATGCACATCATTACACCTGACTTT  747

seq1  ATTTTATTTCTGGGGCTGGGTGCTGTGGAGGGAAGTCAGAAAGGAGCTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCTGGGGCTGGGTGCTGTGGAGGGAAGTCAGAAAGGAGCTGG  797

seq1  AGTTACAGGCCCTTGTGGACAACCCAGTGTGGATGGTGAACTCTGTTCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGGCCCTTGTGGACAACCCAGTGTGGATGGTGAACTCTGTTCTG  847

seq1  TCAGAAGTGAGTGGTCAGAACCATTGAGCCATCTCACCAGCCTCTTGTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTGAGTGGTCAGAACCATTGAGCCATCTCACCAGCCTCTTGTTA  897

seq1  GACTTTTATTTCTTTTTTTTGTTCTTGTGTTTTTGAGACAGAGTTTCTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTATTTCTTTTTTTTGTTCTTGTGTTTTTGAGACAGAGTTTCTAT  947

seq1  GTGTATCCCTGGCTATCCTGCAACTCTCTCTTTGTAGACTAGGCTGGGAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCCCTGGCTATCCTGCAACTCTCTCTTTGTAGACTAGGCTGGGAT  997

seq1  CACAGAGATCAGACTGCCTCTGCCTCCTGACTCCTGAGCGCTGGGATTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATCAGACTGCCTCTGCCTCCTGACTCCTGAGCGCTGGGATTAA  1047

seq1  AGGTGTGCACCCACCACTGCCTGGCTTTTGTTATGCCCTTAACCCCGCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCACCCACCACTGCCTGGCTTTTGTTATGCCCTTAACCCCGCTA  1097

seq1  GAGTTTGTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC  1147

seq1  TGGAATTC  1153
      ||||||||
seq2  TGGAATTC  1155

seq1: chr17_47717158_47717631
seq2: B6Ng01-089I03.g_71_544

seq1  GAATTCACTTGGTGGCAGACTTTTGAGATCTCTGCAGTGTCTGGCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGTGGCAGACTTTTGAGATCTCTGCAGTGTCTGGCAGGCT  50

seq1  CTGGTGATGCACCTGTGTAGTAATCCCAGCACTTGGGTAGAAGCAGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATGCACCTGTGTAGTAATCCCAGCACTTGGGTAGAAGCAGGAGG  100

seq1  GTTGAGAGCTCACTGAATTGCCAGAGATCCTGTTTCAAACAGGCAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGCTCACTGAATTGCCAGAGATCCTGTTTCAAACAGGCAAGCAG  150

seq1  AAGTCTGGATGGACACACACAGGAGGAGTAGGACCTGTCCCCACCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGATGGACACACACAGGAGGAGTAGGACCTGTCCCCACCAGGCA  200

seq1  GCAACCATGTCAGGAAATCAAAGCAAGGAAGAAATCCAAGATGGTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATGTCAGGAAATCAAAGCAAGGAAGAAATCCAAGATGGTACCAG  250

seq1  AGCAGACCTGATGTGATCTTCTCCTTTCCTGGGACATTGGTCTCAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCTGATGTGATCTTCTCCTTTCCTGGGACATTGGTCTCAGGGGA  300

seq1  CACCTGAGGTGCTGACCACATTTACCCACTAGATCAGCAGAGTGAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGGTGCTGACCACATTTACCCACTAGATCAGCAGAGTGAGAGTT  350

seq1  CTCAGGAGAGTCTGGCTTCAGCTCAGCATGCACTAGTTTTTTTAATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGAGTCTGGCTTCAGCTCAGCATGCACTAGTTTTTTTAATTTTG  400

seq1  TAGTGACTTTTGAACAGAGAGTGAGTGGGAGAGATTTAAAGTAAGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTTTGAACAGAGAGTGAGTGGGAGAGATTTAAAGTAAGTGTGT  450

seq1  GTGTGTGTGTGTGTATGTGTAATG  474
      ||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATGTGTAATG  474