BAC Information

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BAC

Clone NameB6Ng01-089L01
Chromosome17 (Build37)
Map Location 74,926,209 - 75,048,375
singlet/doubletdoublet
Overlap geneBirc6
Upstream geneGalnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4
Downstream geneTtc27, LOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089L01.bB6Ng01-089L01.g
ACCDH902204DH902205
length1,1851,069
definitionDH902204|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L01, 5' end.DH902205|Mus musculus domesticus DNA, BAC clone: B6Ng01-089L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,047,185 - 75,048,375)(74,926,209 - 74,927,296)
sequence
gaattcactacattcaccgacttcctcctgctcccagtgctagcaataga
ggggcgagcatccctgccactctcacacttttactgatactttcctttac
acttgtatactaaagagaaatggagctgaccgtgcaagttagaactgcat
aacgcactttacaacacctacacaaacatttctcatttagagaaaaacta
gcaatatcactgatcaatcttaaaacaagaaaggctgagagtgcagctcc
aggaaaagaacacatcaatccctaggatggaggaaatgcagtaaatgtaa
aacgttactccaaaacaactacttctgtatttattattttcaaattaccc
tcatatcaaaaataattatcaatattttttgaacacattccacaaatgaa
ggtgtgtgagaattctgagtgctagtggagaaactccaagaaacaagagc
cttgtatccctagtttcttcgaaacccaggattgttctttcagtgttttc
ttcctgctgtcctgtgctctgaataaagcacactacggcatgggacttta
gcccacttggtttttaggctccattctcttagatctcatcaactctaaag
cagtaaactacagaaacagacacaatactatacctaacaaatggaaatat
acagtcaatatagcatacacaagagtaggatttcactcgtactcactcaa
agagctctcggtctagcagtgctggcaaatcatactccaccagcagttca
taactgtgccaaagaatcgctgctacacagtgcaaatgagagggggatgg
catgagaagaccatactcgacagctgatgagctcgggcacatatagttca
ttctgccacttctctttcaaagcagccatttttgcagagtcactgaccca
ctttagcaaggcctgaattcttaaaaagttaagaaagaccagtaatgcca
caactgaaattgatataaatatatctttacatgtgagtattcctacaatg
tatacggactacaaatacgtttagctcaaaagcattaaaaatatgtctat
acaaatattattttgttattatataaagtatatgaatagatgtttgatag
aatatatcgttaacatttgcagacttttctggaagaaaaagtattaattt
ccaattcacacaaatagtgttgtgattaattaaaa
gaattcaacctctagcttctggtagcaacagcctccaagtgctgggatga
aaggtgtgggccaccatcaccaggcaccaaacaattttttattgcctcaa
gttttttttttttggaaaggatcttgttaaatagcgcaggcttgcccaga
attcttagcattactgtttcagactgggattctaggtatgcgagaccaca
cccaggcaccgctacactgtaactacaagtgactgactgacaagtaactg
tttcaacataaagtttaagaaagatgttctttcaaatctaacgaaggagg
atactccactgttacagcaaatctctccaacccaattatgctctggcaat
gaaaacacgacacaattagtatgaatacatgctgtgcgcctagattgggc
agatctacaaccactacactaccatcttccacatctatgagaccacttag
aacttgcgttttctccaggccatgttcttctgttctgcttttcttcttcc
tcctcctctgccttctctgtctcaaacctccttcctttctttccactcca
ctttccctttctctgcccaatcatcagctttcctttattttacaaattaa
ggtgggaaggtttacaagaaatcacctaagtgctgactcattccttgttc
acaactcctcacaggagaacagaattgacatcaaatataattagccccag
ggcaatccacaacaccccaccaaaaatcatgtaaatcctttgcaatgagc
tacactaggctgacctgtaatgtgtccagcacctcattaatgagcatgtc
tgtttattaaaagatttggaactatcgcttctcagtcttctagatcaagt
gtaaaaaaaatctgaaactagggcaggcgtcgtaaaaaaaaatcaggttc
agttctaatgagaggcttgtcagagtgtgcatgatagagcctacttcgga
tctcgcttcacccgcacgcctcctcctctgcccgtgctgggaaccgctgg
gatcagccgccctgccacgagggcctctgggcgtacagacagtcgcgcgg
ctcggtttggctagcggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75047185_75048375
seq2: B6Ng01-089L01.b_48_1232 (reverse)

seq1  TTTTAATTTAATCACAAACATGATTT-TGTGAATTGG-AATTAATACTTT  48
      |||||| |||||||| ||||  |||| |||||||||| ||||||||||||
seq2  TTTTAA-TTAATCAC-AACACTATTTGTGTGAATTGGAAATTAATACTTT  48

seq1  TTCTT-CAG-AAAGTCTTACAAATGTTTAAACGAATATA-TCTATC-AAC  94
      ||||| ||| |||||| | ||||||||  |||| ||||| |||||| |||
seq2  TTCTTCCAGAAAAGTC-TGCAAATGTT--AACG-ATATATTCTATCAAAC  94

seq1  ATCTATTCATATACTTTATATAATAAACAAAATAATATATGTATAGACAT  144
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  ATCTATTCATATACTTTATATAAT-AACAAAATAATATTTGTATAGACAT  143

seq1  ATTTTTAATGCTTTTGAGCTAAAACGTATTTGTAGTCCGTATTACATTGG  194
      |||||||||||||||||||| |||||||||||||||||||| |||||| |
seq2  ATTTTTAATGCTTTTGAGCT-AAACGTATTTGTAGTCCGTA-TACATT-G  190

seq1  TAGGAATACTTCACATGTAAAGATATTATTTATATCAAATTTCAGTTGTG  244
      ||||||||| ||||||||||||||| |||||||||| |||||||||||||
seq2  TAGGAATAC-TCACATGTAAAGATA-TATTTATATC-AATTTCAGTTGTG  237

seq1  GCATTACTGGTCTTTCTTAACTTTTTAAGAATTCAGGCCTTGCTAAAGTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTGGTCTTTCTTAACTTTTTAAGAATTCAGGCCTTGCTAAAGTG  287

seq1  GGTCAGTGACTCTGCAAAAATGGCTGCTTTG-AAGAGAAGTGGCAGAATG  343
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTCAGTGACTCTGCAAAAATGGCTGCTTTGAAAGAGAAGTGGCAGAATG  337

seq1  AACTATATGTGCCCGAGCTCATCAGCTGTCGAGTATGGTCTTCTCATGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATGTGCCCGAGCTCATCAGCTGTCGAGTATGGTCTTCTCATGCC  387

seq1  ATCCCCCTCTCATTTGCACTGTGTAGCAGCGATTCTTTGGCACAGTTATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCTCTCATTTGCACTGTGTAGCAGCGATTCTTTGGCACAGTTATG  437

seq1  AACTGCTGGTGGAGTATGATTTGCCAGCACTGCTAGACCGAGAGCTCTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGGTGGAGTATGATTTGCCAGCACTGCTAGACCGAGAGCTCTTT  487

seq1  GAGTGAGTACGAGTGAAATCCTACTCTTGTGTATGCTATATTGACTGTAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTACGAGTGAAATCCTACTCTTGTGTATGCTATATTGACTGTAT  537

seq1  ATTTCCATTTGTTAGGTATAGTATTGTGTCTGTTTCTGTAGTTTACTGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATTTGTTAGGTATAGTATTGTGTCTGTTTCTGTAGTTTACTGCT  587

seq1  TTAGAGTTGATGAGATCTAAGAGAATGGAGCCTAAAAACCAAGTGGGCTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTGATGAGATCTAAGAGAATGGAGCCTAAAAACCAAGTGGGCTA  637

seq1  AAGTCCCATGCCGTAGTGTGCTTTATTCAGAGCACAGGACAGCAGGAAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCATGCCGTAGTGTGCTTTATTCAGAGCACAGGACAGCAGGAAGA  687

seq1  AAACACTGAAAGAACAATCCTGGGTTTCGAAGAAACTAGGGATACAAGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAAAGAACAATCCTGGGTTTCGAAGAAACTAGGGATACAAGGC  737

seq1  TCTTGTTTCTTGGAGTTTCTCCACTAGCACTCAGAATTCTCACACACCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTCTTGGAGTTTCTCCACTAGCACTCAGAATTCTCACACACCTT  787

seq1  CATTTGTGGAATGTGTTCAAAAAATATTGATAATTATTTTTGATATGAGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGAATGTGTTCAAAAAATATTGATAATTATTTTTGATATGAGG  837

seq1  GTAATTTGAAAATAATAAATACAGAAGTAGTTGTTTTGGAGTAACGTTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTGAAAATAATAAATACAGAAGTAGTTGTTTTGGAGTAACGTTTT  887

seq1  ACATTTACTGCATTTCCTCCATCCTAGGGATTGATGTGTTCTTTTCCTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACTGCATTTCCTCCATCCTAGGGATTGATGTGTTCTTTTCCTGG  937

seq1  AGCTGCACTCTCAGCCTTTCTTGTTTTAAGATTGATCAGTGATATTGCTA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACTCTCAGCCTTTCTTGTTTTAAGATTGATCAGTGATATTGCTA  987

seq1  GTTTTTCTCTAAATGAGAAATGTTTGTGTAGGTGTTGTAAAGTGCGTTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCTAAATGAGAAATGTTTGTGTAGGTGTTGTAAAGTGCGTTAT  1037

seq1  GCAGTTCTAACTTGCACGGTCAGCTCCATTTCTCTTTAGTATACAAGTGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTAACTTGCACGGTCAGCTCCATTTCTCTTTAGTATACAAGTGT  1087

seq1  AAAGGAAAGTATCAGTAAAAGTGTGAGAGTGGCAGGGATGCTCGCCCCTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAGTATCAGTAAAAGTGTGAGAGTGGCAGGGATGCTCGCCCCTC  1137

seq1  TATTGCTAGCACTGGGAGCAGGAGGAAGTCGGTGAATGTAGTGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTAGCACTGGGAGCAGGAGGAAGTCGGTGAATGTAGTGAATTC  1185

seq1: chr17_74926209_74927296
seq2: B6Ng01-089L01.g_69_1137

seq1  GAATTCAACCTCTAGCTTCTGGTAGCAACAGCCTCCAAGTGCTGGGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCTAGCTTCTGGTAGCAACAGCCTCCAAGTGCTGGGATGA  50

seq1  AAGGCGTGGGCCACCATCACCAGGCACCAAACAATTTTTTATTGCCTCAA  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGGGCCACCATCACCAGGCACCAAACAATTTTTTATTGCCTCAA  100

seq1  GTTTTTTTTTTTTGGAAAGGATCTTGTTAAATAGCGCAGGCTTGCCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTGGAAAGGATCTTGTTAAATAGCGCAGGCTTGCCCAGA  150

seq1  ATTCTTAGCATTACTGTTTCAGACTGGGATTCTAGGTATGCGAGACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGCATTACTGTTTCAGACTGGGATTCTAGGTATGCGAGACCACA  200

seq1  CCCAGGCACCGCTACACTGTAACTACAAGTGACTGACTGACAAGTAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCACCGCTACACTGTAACTACAAGTGACTGACTGACAAGTAACTG  250

seq1  TTTCAACATAAAGTTTAAGAAAGATGTTCTTTCAAATCTAACGAAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACATAAAGTTTAAGAAAGATGTTCTTTCAAATCTAACGAAGGAGG  300

seq1  ATACTCCACTGTTACAGCAAATCTCTCCAACCCAATTATGCTCTGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCACTGTTACAGCAAATCTCTCCAACCCAATTATGCTCTGGCAAT  350

seq1  GAAAACACGACACAATTAGTATGAATACATGCTGTGCGCCTAGATTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACGACACAATTAGTATGAATACATGCTGTGCGCCTAGATTGGGC  400

seq1  AGATCTACAACCACTACACTACCATCTTCCACATCTATGAGACCACTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTACAACCACTACACTACCATCTTCCACATCTATGAGACCACTTAG  450

seq1  AACTTGCGTTTTCTCCAGGCCATGTTCTTCTGTTCTGCTTTTCTTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCGTTTTCTCCAGGCCATGTTCTTCTGTTCTGCTTTTCTTCTTCC  500

seq1  TCCTCCTCTGCCTTCTCTGTCTCAAACCTCCTTCCTTTCTTTCCACTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGCCTTCTCTGTCTCAAACCTCCTTCCTTTCTTTCCACTCCA  550

seq1  CTTTCCCTTTCTCTGCCCAATCATCAGCTTTCCTTTATTTTACAAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTTCTCTGCCCAATCATCAGCTTTCCTTTATTTTACAAATTAA  600

seq1  GGTGGGAAGGTTTACAAGAAATCACCTAAGTGCTGACTCATTCCTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAAGGTTTACAAGAAATCACCTAAGTGCTGACTCATTCCTTGTTC  650

seq1  ACAACTCCTCACAGGAGAACAGAATTGACATCAAATATAATTAGCCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCTCACAGGAGAACAGAATTGACATCAAATATAATTAGCCCCAG  700

seq1  GGCAATCCACAACACCCCACCAAAAATCATGTAAATCCTTTGCAATGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCCACAACACCCCACCAAAAATCATGTAAATCCTTTGCAATGAGC  750

seq1  TACACTAGGCTGACCTGTAATGTGTCCAGCACCTCATTAATGAGCATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGGCTGACCTGTAATGTGTCCAGCACCTCATTAATGAGCATGTC  800

seq1  TGTTTATTAAAAGATTTGGAACTATCGCTTCTCAGTCTTCTAAGATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTTTATTAAAAGATTTGGAACTATCGCTTCTCAGTCTTCT-AGATCAAG  849

seq1  TGTAAAAAAAATCTGAAACTAGGGCAGGCGTCGTAAAAAAAAAATCAGGT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTAAAAAAAATCTGAAACTAGGGCAGGCGTCGT-AAAAAAAAATCAGGT  898

seq1  TCAGTTCCAATGAAGAGGCTTGTCAGAGTGTGCAATGATAGAGGCCTACT  950
      ||||||| |||| |||||||||||||||||||| |||||||| |||||||
seq2  TCAGTTCTAATG-AGAGGCTTGTCAGAGTGTGC-ATGATAGA-GCCTACT  945

seq1  TCCGGATCTCGCCTCCACCCCGCAACGCCCTCCTCCTCTGCCCCGTGCTG  1000
      | |||||||||| ||   ||||| ||| |||||||||||| |||||||||
seq2  T-CGGATCTCGCTTC--ACCCGC-ACG-CCTCCTCCTCTG-CCCGTGCTG  989

seq1  GGAACCGCTGGGAATCAGCCGCCCTGGCCACGAAGGGGCCTCTGGGCGTA  1050
      |||||||||||| |||||||||||| |||||||  |||||||||||||||
seq2  GGAACCGCTGGG-ATCAGCCGCCCT-GCCACGA--GGGCCTCTGGGCGTA  1035

seq1  CCAGACAAGTCGCGCGGGCTCGGGTTTGCCTAGCGGAA  1088
       ||||| |||||||| ||||| |||||| |||||||||
seq2  -CAGAC-AGTCGCGC-GGCTC-GGTTTGGCTAGCGGAA  1069