BAC Information

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BAC

Clone NameB6Ng01-091O13
Chromosome17 (Build37)
Map Location 25,533,238 - 25,606,617
singlet/doubletdoublet
Overlap geneCacna1h
Upstream geneAbca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1
Downstream geneTekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091O13.bB6Ng01-091O13.g
ACCDH903812DH903813
length1,1131,099
definitionDH903812|Mus musculus domesticus DNA, BAC clone: B6Ng01-091O13, 5' end.DH903813|Mus musculus domesticus DNA, BAC clone: B6Ng01-091O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,533,238 - 25,534,354)(25,605,507 - 25,606,617)
sequence
gaattccagagtcacctggacatttaacccgaacagcaaacactttggat
gggagcgggcttaggtttcatctctgctccaacaaacaggttacccaggt
ggaggagtcacgggctccgctgggtaggctgaacacacagggtgcgaggt
agagccctcgtaactatgcttgcacctctttcacctaacacccattcatg
tccttggaaaacagattctgaactccagtgtttcaaggggatcttggcgt
tcataaaggtctggtaacttgcccagtgtcacacagcatttgagccctat
ctcatctcagaagtcaaggccaggcaggacgatggaaggctgagtgctga
ggctaaaaagtccagatcaggcagctgaaaaggggtgtgtgatgcccagg
tagatccaggaaccatacccgttcacgcatgtgcacacgcaccttgtgca
gctccgtgggagtcacaccttccaccgtcaacctgaacatctgagctcag
ctactgaggaaacaccaaaactgtccacagatgaaggcagatggacagca
tctggacaggccacgcctcaagcacatcctgcaagctttccctccatgtg
tagtgggagcatgcggtgtgttcctctccccctcgttccagaagctctga
gctccgttcccttgtatgggagaggtgggcagtgggctgcagagtacccc
caaaagctcagactcttacatgtacctccacttgcctgaggccctcactg
gacactgatataactgggaaccttctcagcccccaggcccactccaggtg
ctatgcaaacgaggaggttcagagaggctcctggcactaggcactgggca
ccccgtcacatcccaactgggactaccctagaaaggccaagtctgctggt
gtctggataaatggcaggcccagcaggataagggcggatctctttttcag
gcagagaaggcacttactggggacccggttgatgcgcgaaggggccgcag
cacacgcactgttcgatggcagaaaggctcacgttgtgttctgttcagaa
agtattcatcatgctggggaagcaggatgctctcaggagggaagagccaa
aggcctctgtctc
gaattcataaccagatggagcaagagctgccactgttcctcaagagctag
aagccaagaacctttgggggccagtgtgggcctccctctgtctcctctgt
gcctcagttttcccacatggtagtaggtacagagctacccagagcacacc
acagtttctccttagattcattcctgacatgtggagccagggactgcaaa
ggaagagaactagcctgggcccagtgactctacctgatcttcacctgcag
tattcaagtactgggcactgcaggtagctgatgctcccatggaaccccca
ggctaatgaggaaggccaggtctcaatgtaggttcccctatgtcaagata
gactccaaggtagagctttgaccttagtccccagcttgaggggccaagac
tcgccagacaccttcagggatgtgttgagcctttgtccctatcatccacg
gcctctagtctgacccttggtccaaagaaagaggcatttgtgctctgaag
gtgacagggtgcagtccctcccagcctctctccgcccaaccctttcagag
aggaacaccaatcattgctgctgaggccatcacaactatactcaaagctg
gggctaagtgggaaacagtcaggtaaagccacagtgagcacagactgaat
gggatgtgtgggcagaatggtggtgcactacaggactgtatggagtgggg
tggggtcctctctcatgttgcccttcttcctacattgcagttacagtggg
aaaattgagtcggggcgggggggaagggcttgtgaaagttcccacatcac
agctgcagcatgatggggctagaagtgctagctccatggactctgcctgt
gtccccaagaaccagacccccaccacactggacagcctgcaggatgcctg
gggaaacagaggggcatcaggactgaccaagagtacagctgtccctgcac
agatttttttttttacaactctagacatcacagttgggacggacatgggc
aaagggttccttttctttgagtctagcagcagctcccaagccagaggaga
attccttagcgctagcccatcgcaggttctaaatggaggagcatgcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25533238_25534354
seq2: B6Ng01-091O13.b_45_1157

seq1  GAATTCCAGAGTCACCTGGACATTTAACCCGAACAGCAAACACTTTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTCACCTGGACATTTAACCCGAACAGCAAACACTTTGGAT  50

seq1  GGGAGCGGGCTTAGGTTTCATCTCTGCTCCAACAAACAGGTTACCCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCGGGCTTAGGTTTCATCTCTGCTCCAACAAACAGGTTACCCAGGT  100

seq1  GGAGGAGTCACGGGCTCCGCTGGGTAGGCTGAACACACAGGGTGCGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTCACGGGCTCCGCTGGGTAGGCTGAACACACAGGGTGCGAGGT  150

seq1  AGAGCCCTCGTAACTATGCTTGCACCTCTTTCACCTAACACCCATTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTCGTAACTATGCTTGCACCTCTTTCACCTAACACCCATTCATG  200

seq1  TCCTTGGAAAACAGATTCTGAACTCCAGTGTTTCAAGGGGATCTTGGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAAAACAGATTCTGAACTCCAGTGTTTCAAGGGGATCTTGGCGT  250

seq1  TCATAAAGGTCTGGTAACTTGCCCAGTGTCACACAGCATTTGAGCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGTCTGGTAACTTGCCCAGTGTCACACAGCATTTGAGCCCTAT  300

seq1  CTCATCTCAGAAGTCAAGGCCAGGCAGGACGATGGAAGGCTGAGTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAGAAGTCAAGGCCAGGCAGGACGATGGAAGGCTGAGTGCTGA  350

seq1  GGCTAAAAAGTCCAGATCAGGCAGCTGAAAAGGGGTGTGTGATGCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAAGTCCAGATCAGGCAGCTGAAAAGGGGTGTGTGATGCCCAGG  400

seq1  TAGATCCAGGAACCATACCCGTTCACGCATGTGCACACGCACCTTGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAGGAACCATACCCGTTCACGCATGTGCACACGCACCTTGTGCA  450

seq1  GCTCCGTGGGAGTCACACCTTCCACCGTCAACCTGAACATCTGAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTGGGAGTCACACCTTCCACCGTCAACCTGAACATCTGAGCTCAG  500

seq1  CTACTGAGGAAACACCAAAACTGTCCACAGATGAAGGCAGATGGACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAGGAAACACCAAAACTGTCCACAGATGAAGGCAGATGGACAGCA  550

seq1  TCTGGACAGGCCACGCCTCAAGCACATCCTGCAAGCTTTCCCTCCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACAGGCCACGCCTCAAGCACATCCTGCAAGCTTTCCCTCCATGTG  600

seq1  TAGTGGGAGCATGCGGTGTGTTCCTCTCCCCCTCGTTCCAGAAGCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGAGCATGCGGTGTGTTCCTCTCCCCCTCGTTCCAGAAGCTCTGA  650

seq1  GCTCCGTTCCCTTGTATGGGAGAGGTGGGCAGTGGGCTGCAGAGTACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTTCCCTTGTATGGGAGAGGTGGGCAGTGGGCTGCAGAGTACCCC  700

seq1  CAAAAGCTCAGACTCTTACATGTACCTCCACTTGCCTGAGGCCCTCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTCAGACTCTTACATGTACCTCCACTTGCCTGAGGCCCTCACTG  750

seq1  GACACTGATATAACTGGGAACCTTCTCAGCCCCCAGGCCCACTCCAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGATATAACTGGGAACCTTCTCAGCCCCCAGGCCCACTCCAGGTG  800

seq1  CTATGCAAACGAGGAGGTTCAGAGAGGCTCCTGGCACTAGGCACTGGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAAACGAGGAGGTTCAGAGAGGCTCCTGGCACTAGGCACTGGGCA  850

seq1  CCCCGTCACATCCCAACTGGGACTACCCTAGAAAGGCCAAGTCTGCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTCACATCCCAACTGGGACTACCCTAGAAAGGCCAAGTCTGCTGGT  900

seq1  GTCTGGATAAATGGCAGGCCCAGCAGGATAAGGGCGGATCTCTTTTTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTGGATAAATGGCAGGCCCAGCAGGATAAGGGCGGATCTCTTTTTCA-  949

seq1  GGCAGGAGAGGCACTTACTGGGGACCCGGTTGATGGCGCGGAGGGGCCGC  1000
      |||||   |||||||||||||||||||||||||| ||||| |||||||||
seq2  GGCAGAGAAGGCACTTACTGGGGACCCGGTTGAT-GCGCGAAGGGGCCGC  998

seq1  AGCACACGCACTGTTCGGATGGCAGAGAGGCTCACGTTGTG-TCCGTCCA  1049
      |||||||||||||||| ||||||||| |||||||||||||| || || ||
seq2  AGCACACGCACTGTTC-GATGGCAGAAAGGCTCACGTTGTGTTCTGTTCA  1047

seq1  GAGAGTATTCCATCATGCTGGGGAAGCAGGGATGCTC-AGGGAGGGAAGA  1098
      || |||||| |||||||||||||||||| ||||||||   ||||||||||
seq2  GAAAGTATT-CATCATGCTGGGGAAGCA-GGATGCTCTCAGGAGGGAAGA  1095

seq1  GCCCAGAGGCCTCTGTCTC  1117
      | ||| |||||||||||||
seq2  G-CCAAAGGCCTCTGTCTC  1113

seq1: chr17_25605507_25606617
seq2: B6Ng01-091O13.g_68_1166 (reverse)

seq1  ACTGCATGGCTTCCCTCCCATTTAGAACCTTGCCGATTGGGGCTAGCGCT  50
      ||||||| |||  ||| |||||||||||||   ||||  |||||||||||
seq2  ACTGCAT-GCT--CCT-CCATTTAGAACCT--GCGAT--GGGCTAGCGCT  42

seq1  AGGGAA-TCTCCTCTGGCCTTGGGGAGCTGCTGGCTAGACTCAAAAGAAA  99
      | |||| |||||||||||  | |||||||||| ||||||||| |||||||
seq2  AAGGAATTCTCCTCTGGC--TTGGGAGCTGCT-GCTAGACTC-AAAGAAA  88

seq1  GGGACCCTTTTGCCCATGTCCGTCCCACTTGTGATGTCTAGAGTTTGTAA  149
       ||| || |||||||||||||||||||  |||||||||||||| ||||||
seq2  AGGAACCCTTTGCCCATGTCCGTCCCAACTGTGATGTCTAGAG-TTGTAA  137

seq1  AAAAAAAAATCTGTGCAGGGGACAGCTGTACTCTTGGTCAGTCCTGATGC  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCTGTGCA-GGGACAGCTGTACTCTTGGTCAGTCCTGATGC  186

seq1  CCCTCTGTTT-CCCAGGCATCCTGCAGGGCTGTCCAGTGTGGT-GGGGTC  247
      |||||||||| ||||||||||||||| |||||||||||||||| ||||||
seq2  CCCTCTGTTTCCCCAGGCATCCTGCA-GGCTGTCCAGTGTGGTGGGGGTC  235

seq1  TGGTTCTTGGGGACACAGGCAGAGTCCATGGAGCTAGCACTTCTAGCCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTGGGGACACAGGCAGAGTCCATGGAGCTAGCACTTCTAGCCCC  285

seq1  ATCATGCTGCAGCTGTGATGTGGGAACTTTCACAAGCCCTTCCCCCCCGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTGCAGCTGTGATGTGGGAACTTTCACAAGCCCTTCCCCCCCGC  335

seq1  CCCGACTCAATTTTCCCACTGTAACTGCAATGTAGGAAGAAGGGCAACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTCAATTTTCCCACTGTAACTGCAATGTAGGAAGAAGGGCAACAT  385

seq1  GAGAGAGGACCCCACCCCACTCCATACAGTCCTGTAGTGCACCACCATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGACCCCACCCCACTCCATACAGTCCTGTAGTGCACCACCATTC  435

seq1  TGCCCACACATCCCATTCAGTCTGTGCTCACTGTGGCTTTACCTGACTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACACATCCCATTCAGTCTGTGCTCACTGTGGCTTTACCTGACTGT  485

seq1  TTCCCACTTAGCCCCAGCTTTGAGTATAGTTGTGATGGCCTCAGCAGCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTTAGCCCCAGCTTTGAGTATAGTTGTGATGGCCTCAGCAGCAA  535

seq1  TGATTGGTGTTCCTCTCTGAAAGGGTTGGGCGGAGAGAGGCTGGGAGGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTGTTCCTCTCTGAAAGGGTTGGGCGGAGAGAGGCTGGGAGGGA  585

seq1  CTGCACCCTGTCACCTTCAGAGCACAAATGCCTCTTTCTTTGGACCAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCTGTCACCTTCAGAGCACAAATGCCTCTTTCTTTGGACCAAGG  635

seq1  GTCAGACTAGAGGCCGTGGATGATAGGGACAAAGGCTCAACACATCCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTAGAGGCCGTGGATGATAGGGACAAAGGCTCAACACATCCCTG  685

seq1  AAGGTGTCTGGCGAGTCTTGGCCCCTCAAGCTGGGGACTAAGGTCAAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTCTGGCGAGTCTTGGCCCCTCAAGCTGGGGACTAAGGTCAAAGC  735

seq1  TCTACCTTGGAGTCTATCTTGACATAGGGGAACCTACATTGAGACCTGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTGGAGTCTATCTTGACATAGGGGAACCTACATTGAGACCTGGC  785

seq1  CTTCCTCATTAGCCTGGGGGTTCCATGGGAGCATCAGCTACCTGCAGTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATTAGCCTGGGGGTTCCATGGGAGCATCAGCTACCTGCAGTGC  835

seq1  CCAGTACTTGAATACTGCAGGTGAAGATCAGGTAGAGTCACTGGGCCCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTTGAATACTGCAGGTGAAGATCAGGTAGAGTCACTGGGCCCAG  885

seq1  GCTAGTTCTCTTCCTTTGCAGTCCCTGGCTCCACATGTCAGGAATGAATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTCTCTTCCTTTGCAGTCCCTGGCTCCACATGTCAGGAATGAATC  935

seq1  TAAGGAGAAACTGTGGTGTGCTCTGGGTAGCTCTGTACCTACTACCATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAAACTGTGGTGTGCTCTGGGTAGCTCTGTACCTACTACCATGT  985

seq1  GGGAAAACTGAGGCACAGAGGAGACAGAGGGAGGCCCACACTGGCCCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACTGAGGCACAGAGGAGACAGAGGGAGGCCCACACTGGCCCCCA  1035

seq1  AAGGTTCTTGGCTTCTAGCTCTTGAGGAACAGTGGCAGCTCTTGCTCCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTTGGCTTCTAGCTCTTGAGGAACAGTGGCAGCTCTTGCTCCAT  1085

seq1  CTGGTTATGAATTC  1111
      ||||||||||||||
seq2  CTGGTTATGAATTC  1099