BAC Information

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BAC

Clone NameB6Ng01-092F24
Chromosome17 (Build37)
Map Location 63,286,825 - 63,383,444
singlet/doubletdoublet
Overlap genenone
Upstream geneEfna5
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092F24.bB6Ng01-092F24.g
ACCDH904152DH904153
length1,1271,124
definitionDH904152|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F24, 5' end.DH904153|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,286,825 - 63,287,980)(63,382,295 - 63,383,444)
sequence
gaattctctaccaatttttcaagtgttctgttattatacctagataagag
acttgaagtttgtttgtttgtttgtttgtaatgatgctttcccaagagga
aatgaatattttgccctttgaagtggggaaggaaggctttattgggaagc
caaagagacactaatgacccaaaaccagatacactgtgagatggtctgga
gccccaatgacgtcagtggatggggaagcaccgcgtactcgaattagaat
atagagatgactttagaaatggacaggatgcagagattgtgtcaaagagt
aagctttagagtcttagaggaaaggtgacacgtaggaacggggaaagggc
cagacgtgctagcaagaccctttcagaaacactcaacagaatgataaatt
ttcggtgttgaatcactgaagaaaaactaaccaaggcagagtctttgggg
attcactggaaataggtgatagctggaactgtgaaaaggaacgctgggaa
aactcagaacaaggctgggtcttagggccacagtgtttgggcacaggcag
ctaaatgacagtgacggtcttgtgatgaagaacatccctgcggaacactg
cctctaggccaggctgctgccagagacagagctccgggaagacaggggta
caggggtatgagagcagcctcctcatgctaagctagactgcagatgctca
gagacttggagagaggagcgaggcactgctaggacccctctgagaacata
gtcgtttcctgggatgaaaagccagaattttatgaggggaaatagatgtt
tatgaatcctccccaccccaacacactcccatttcttttttcttatgaaa
gaaacacggctatgaaatgatgataagaagtctaactagggaatgttgga
gactataaccagactgttttctctgtccctgaccctgaaaagatgtctgt
tctaaagggtagaaatagtagttttttttttttcttctaagaaatagcat
acatacaagtatatatagacccagaggatatattagatacaccataccac
acacgacacacaataccctagtgaaggagacatgaatttttaagatttat
atatatgtaagtccactgactgtcttc
gaattcataatgaagagagacctgccacatttagtctggttttggctaag
aacacgtggggacttttgaattgccaaacgtccagagtgagtctagccat
ttctgacccatgacctctgtagaatcagcattctgctggatgggccaggg
ccattttccttgaatgatgtacaacccggaaagatagctggaaacagcac
agcttcttggtgtcttatttggaatgttgttaatgatgcagggtttattt
aagacaattcttaacccagagattattctgaacgatgcttccacacagct
tggccaagctaccttagatactcttgaccctatgaaaaaaaaaattccga
gttcgccagtgttggcaacttcattctctcatccctaactaaggcatctt
cttccaccaaagcaaccaaaactaacttcatgacttattccatcttcctt
tgctcaaaacctatccctggaaagaatactgctgtagccgtcatttacac
cttgatgtgagaatctttctgacagtgaggggggacttgtatttatttaa
aagagtttttgagcacctgggagcaattagactaggcagggagaggagcc
tgccaggtgcctgaaacattaccaggtagacccgcagattccagggccct
aattccaggtttctgaggaccttgcagcccccaggcgatgcttttatctc
tttcttcccacacttggaggaggatcccaagacaagactggggctttcac
tgcgaccgcagaagagtgggttgctctccagagtgaatccatttcccttg
tgggctgaggtttgggcagggaggacctgagatcagaatccactcacagc
aatgccagaaaatggtgcgattagaagcaaaactatggagtgcattgcac
agaactcctcttattccatatgcaaagctatggacttaagtgtgagcagg
ctccggagagggctctccgtctgtatcaccgattgctcttgggcagcttt
caacgtatttgttctgttatcacaagattttgtttctagtcaagccagtt
gctcttcagggatataacgtctcatctgcctcctcagtatggatacttac
ctattcggttactacagcacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63286825_63287980
seq2: B6Ng01-092F24.b_49_1175

seq1  GAATTCTCTACCAATTTTTCAAGTGTTCTGTTATTATACCTAGATAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACCAATTTTTCAAGTGTTCTGTTATTATACCTAGATAAGAG  50

seq1  ACTTGAAGTTTGTTTGTTTGTTTGTTTGTAATGATGCTTTCCCAAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGTTTGTTTGTTTGTTTGTTTGTAATGATGCTTTCCCAAGAGGA  100

seq1  AATGAATATTTTGCCCTTTGAAGTGGGGAAGGAAGGCTTTATTGGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATTTTGCCCTTTGAAGTGGGGAAGGAAGGCTTTATTGGGAAGC  150

seq1  CAAAGAGACACTAATGACCCAAAACCAGATACACTGTGAGATGGTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACACTAATGACCCAAAACCAGATACACTGTGAGATGGTCTGGA  200

seq1  GCCCCAATGACGTCAGTGGATGGGGAAGCACCGCGTACTCGAATTAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATGACGTCAGTGGATGGGGAAGCACCGCGTACTCGAATTAGAAT  250

seq1  ATAGAGATGACTTTAGAAATGGACAGGATGCAGAGATTGTGTCAAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATGACTTTAGAAATGGACAGGATGCAGAGATTGTGTCAAAGAGT  300

seq1  AAGCTTTAGAGTCTTAGAGGAAAGGTGACACGTAGGAACGGGGAAAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTAGAGTCTTAGAGGAAAGGTGACACGTAGGAACGGGGAAAGGGC  350

seq1  CAGACGTGCTAGCAAGACCCTTTCAGAAACACTCAACAGAATGATAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGTGCTAGCAAGACCCTTTCAGAAACACTCAACAGAATGATAAATT  400

seq1  TTCGGTGTTGAATCACTGAAGAAAAACTAACCAAGGCAGAGTCTTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGTTGAATCACTGAAGAAAAACTAACCAAGGCAGAGTCTTTGGGG  450

seq1  ATTCACTGGAAATAGGTGATAGCTGGAACTGTGAAAAGGAACGCTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGGAAATAGGTGATAGCTGGAACTGTGAAAAGGAACGCTGGGAA  500

seq1  AACTCAGAACAAGGCTGGGTCTTAGGGCCACAGTGTTTGGGCACAGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAACAAGGCTGGGTCTTAGGGCCACAGTGTTTGGGCACAGGCAG  550

seq1  CTAAATGACAGTGACGGTCTTGTGATGAAGAACATCCCTGCGGAACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGACAGTGACGGTCTTGTGATGAAGAACATCCCTGCGGAACACTG  600

seq1  CCTCTAGGCCAGGCTGCTGCCAGAGACAGAGCTCCGGGAAGACAGGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGGCCAGGCTGCTGCCAGAGACAGAGCTCCGGGAAGACAGGGGTA  650

seq1  CAGGGGTATGAGAGCAGCCTCCTCATGCTAAGCTAGACTGCAGATGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTATGAGAGCAGCCTCCTCATGCTAAGCTAGACTGCAGATGCTCA  700

seq1  GAGACTTGGAGAGAGGAGCGAGGCACTGCTAGGACCCCTCTGAGAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGGAGAGAGGAGCGAGGCACTGCTAGGACCCCTCTGAGAACATA  750

seq1  GTCGTTTCCTGGGATGAAAAGCCAGAATTTTATGAGGGGAAATAGATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTTCCTGGGATGAAAAGCCAGAATTTTATGAGGGGAAATAGATGTT  800

seq1  TATGAATCCTCCCCACCCCAACACACTCCCATTTC-TTTTTCTTATGAAA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATGAATCCTCCCCACCCCAACACACTCCCATTTCTTTTTTCTTATGAAA  850

seq1  GAAACACGGCTATGAAATGATGATAAGAAGTCTAACTAGGGAATGTTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACGGCTATGAAATGATGATAAGAAGTCTAACTAGGGAATGTTGGA  900

seq1  GACTATAACCAGACTGTTTTCTCTGTCCCTGAACCTGAAAAAGATGTCTG  949
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  GACTATAACCAGACTGTTTTCTCTGTCCCTGACCCTG-AAAAGATGTCTG  949

seq1  TTCTAAAGGGTAGAAATAGTAGTTTTTTTTTTTTCTCATAAGAAATAACC  999
      ||||||||||||||||||||||||||||||||||||  |||||||| | |
seq2  TTCTAAAGGGTAGAAATAGTAGTTTTTTTTTTTTCTTCTAAGAAAT-AGC  998

seq1  ATACATACAAGTAATATATAGACCCAGAAGATTATATTTAGAATACACAC  1049
      |||||||||||| ||||||||||||||| || |||| |||| ||||||  
seq2  ATACATACAAGT-ATATATAGACCCAGAGGA-TATA-TTAG-ATACAC--  1042

seq1  ACACACACACACACACACACACAATAACACTTAGTGAAAAGGAGACCATG  1099
       || || |||||||  ||||||||||   | |||||  ||||||| ||||
seq2  -CATAC-CACACAC-GACACACAATA--CCCTAGTG--AAGGAGA-CATG  1084

seq1  ATTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGC  1149
      | |||||     |||||||||        ||||||||||| |||||   |
seq2  AATTTTT-----AAGATTTAT-------ATATATGTAAGTCCACTG--AC  1120

seq1  TGTCTTC  1156
      |||||||
seq2  TGTCTTC  1127

seq1: chr17_63382295_63383444
seq2: B6Ng01-092F24.g_69_1192 (reverse)

seq1  AGAGGTGCTGTCAGTAAACCAGAATAAGGTGAGTTAATACCAATACTGAA  50
      ||||||||||| |||||  | |||| |||| ||    || | |||||| |
seq2  AGAGGTGCTGT-AGTAA--CCGAAT-AGGTAAG----TATCCATACTG-A  41

seq1  GAAGGCAGAGATGAGACGTTTATATCCCTGAAAGGAAGGCAAACTGGCTG  100
      | ||||  |||||||||| |||||||||||||  ||  || |||||||| 
seq2  GGAGGC--AGATGAGACG-TTATATCCCTGAA--GA--GC-AACTGGCTT  83

seq1  GACTAGAAACAAAAACCTTGTGATAACAGAAACAAATACGTTGAAAGCTG  150
      |||||||||| |||| ||||||||||||| ||||||||||||||||||||
seq2  GACTAGAAAC-AAAATCTTGTGATAACAG-AACAAATACGTTGAAAGCTG  131

seq1  CCCAAGAGCAAATCGGTGAATACAGACGGAGAAGCCCCTCTCCGGGGCCT  200
      ||||||||| |||||||| |||||||||||||   |||||||||| ||| 
seq2  CCCAAGAGC-AATCGGTG-ATACAGACGGAGA--GCCCTCTCCGGAGCC-  176

seq1  TGCTCCACAACTTAAGTCCATAGCTTTGCATATGGAATAAGAGGAGTTCT  250
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCT-CAC-ACTTAAGTCCATAGCTTTGCATATGGAATAAGAGGAGTTCT  224

seq1  GTGCAATGCACTCCATAGTTTTGCTTCTAATCGCACCATTTTCTGGCATT  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCAATGCACTCCATAGTTTTGCTTCTAATCGCACCATTTTCTGGCA-T  273

seq1  TGCTGTGAGTGGATTCTGATCTCAGGTCCTCCCTG-CCAAACCTCAGCCC  349
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTGTGAGTGGATTCTGATCTCAGGTCCTCCCTGCCCAAACCTCAGCCC  323

seq1  ACAAGGGAAATGGATTCACTCTGGAGAGCAACCCACTCTTCTGCGGTCGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAAATGGATTCACTCTGGAGAGCAACCCACTCTTCTGCGGTCGC  373

seq1  AGTGAAAGCCCCAGTCTTGTCTTGGGATCCTCCTCCAAGTGTGGGAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGCCCCAGTCTTGTCTTGGGATCCTCCTCCAAGTGTGGGAAGAA  423

seq1  AGAGATAAAAGCATCGCCTGGGGGCTGCAAGGTCCTCAGAAACCTGGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAAGCATCGCCTGGGGGCTGCAAGGTCCTCAGAAACCTGGAAT  473

seq1  TAGGGCCCTGGAATCTGCGGGTCTACCTGGTAATGTTTCAGGCACCTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCCTGGAATCTGCGGGTCTACCTGGTAATGTTTCAGGCACCTGGC  523

seq1  AGGCTCCTCTCCCTGCCTAGTCTAATTGCTCCCAGGTGCTCAAAAACTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTCTCCCTGCCTAGTCTAATTGCTCCCAGGTGCTCAAAAACTCT  573

seq1  TTTAAATAAATACAAGTCCCCCCTCACTGTCAGAAAGATTCTCACATCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAATACAAGTCCCCCCTCACTGTCAGAAAGATTCTCACATCAA  623

seq1  GGTGTAAATGACGGCTACAGCAGTATTCTTTCCAGGGATAGGTTTTGAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATGACGGCTACAGCAGTATTCTTTCCAGGGATAGGTTTTGAGC  673

seq1  AAAGGAAGATGGAATAAGTCATGAAGTTAGTTTTGGTTGCTTTGGTGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGATGGAATAAGTCATGAAGTTAGTTTTGGTTGCTTTGGTGGAA  723

seq1  GAAGATGCCTTAGTTAGGGATGAGAGAATGAAGTTGCCAACACTGGCGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCCTTAGTTAGGGATGAGAGAATGAAGTTGCCAACACTGGCGAA  773

seq1  CTCGGAATTTTTTTTTTCATAGGGTCAAGAGTATCTAAGGTAGCTTGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAATTTTTTTTTTCATAGGGTCAAGAGTATCTAAGGTAGCTTGGCC  823

seq1  AAGCTGTGTGGAAGCATCGTTCAGAATAATCTCTGGGTTAAGAATTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTGGAAGCATCGTTCAGAATAATCTCTGGGTTAAGAATTGTCT  873

seq1  TAAATAAACCCTGCATCATTAACAACATTCCAAATAAGACACCAAGAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACCCTGCATCATTAACAACATTCCAAATAAGACACCAAGAAGC  923

seq1  TGTGCTGTTTCCAGCTATCTTTCCGGGTTGTACATCATTCAAGGAAAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTTCCAGCTATCTTTCCGGGTTGTACATCATTCAAGGAAAATG  973

seq1  GCCCTGGCCCATCCAGCAGAATGCTGATTCTACAGAGGTCATGGGTCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCCATCCAGCAGAATGCTGATTCTACAGAGGTCATGGGTCAGA  1023

seq1  AATGGCTAGACTCACTCTGGACGTTTGGCAATTCAAAAGTCCCCACGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTAGACTCACTCTGGACGTTTGGCAATTCAAAAGTCCCCACGTGT  1073

seq1  TCTTAGCCAAAACCAGACTAAATGTGGCAGGTCTCTCTTCATTATGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCAAAACCAGACTAAATGTGGCAGGTCTCTCTTCATTATGAATT  1123

seq1  C  1150
      |
seq2  C  1124