BAC Information

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BAC

Clone NameB6Ng01-093E23
Chromosome17 (Build37)
Map Location 89,705,406 - 89,825,540
singlet/doubletdoublet
Overlap geneLOC100043904
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093E23.bB6Ng01-093E23.g
ACCDH904833DH904834
length1,0501,096
definitionDH904833|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E23, 5' end.DH904834|Mus musculus domesticus DNA, BAC clone: B6Ng01-093E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,824,487 - 89,825,540)(89,705,406 - 89,706,502)
sequence
gaattcttctgtctttatctctcatctcactaaagaagactcgaactaca
tatgcagcaatgcctctggcatgaacattacacagtgactcatgtcccca
gcagtagaaaattattttaattgaagtagattcattgtatcaatttgctt
tctgtcaaactgatgacaaacaactcatagactgttttttatcataaact
tttaaattttgtttatattagtgtaagtgtgcacatgtgacaggcgttat
gtggaggaaaaaggacatcttgtggctgccatttttctactttcactatt
tggaggctacagactgacttctcaggcttgacagcaagcattttacccac
taagtgatgtcatcagcccttctggtattgtttgtaatactgagcaacaa
cctgggttagatgcctatgatttggagctaggcaagaataaaaagatcta
ttccttcatatagctcatactctacctttgcttgcagtaaacatagagac
acaacagaacaacctatttaaagactgatgagtaaaggagaaagtaaagc
tgttgaggtgtggaaaacttaggggctgcaaaataagcatcccatcagaa
gcaatatttgggctgatacttgcataattctaaaaaggcaaaagtgtcag
aaaagaatacagttctgcacagaggaaaatgctgcacagagccttaaagt
atgtgtcccacagtgtgaatttcctgttttcctaatttgctcaggaaatg
agtgtgttgactgctgatcagaggaggaagaaagacctagatgctgagct
gtgagaggcccctagaccatcttgtatgtccatggctctcatgcaggtga
tctctaccttgttctacttatgaaacactgcagagtttgctcagggagga
tcataatcttattacacgtttaaagtccacccttccctcagacagccatt
atctcatccaaaggtttttcaagatggccattattctcatctctatgcat
tacactcagagaagccaatgttctcatccttacacctttagtctgctcct

gaattccaatcttttttgtgagttcgaagaactttagatttatatggcac
ccacacttgtttttagtttttatttctgtatagcaacatatcttaaaatc
tagacgcttataataaaattttactgttttgtttaaatttgtgaattggg
aattcaggaaagagttgaatgaattgtttgcttttatagttggggctgtc
atatatactccaagatctcttctttatttagggttattttgatctttcca
cttctcccctcctctacctcttggcatttcactcttcagggtctattaaa
acatgggttgcattcattcaatagtaggctttgaactgattttctgatca
actggtaactggtctcctatggtatttcctcatacactgatggtcaaaac
agaaacagagtacacagagatttgaagtagagaaaaagacagaactaaga
tgtgatgaggtcacttaaaaaacaaagcatatagggaaaaaaacaacatt
atatagccatttttgaaaactaaaatccatgatgaaattaatatgtatct
gattaatcagtacccaaagatattagtaacaaaaagttagttaaccctct
agaaattcttagtataaaaaaaggtattctctggtaaagtttctatgtag
tctctgtgctacagagatggaaactctgcacaataggaaggaacacacgt
ctactagggaactccaagttacctagctattttcatcataaatatacagc
ttttaatgctacataatcacaagtgagggtcagtcccactttatattgtg
agtacagccaatcttttgtatttgtgtctctggattctagcagatcaaaa
cttatcaggaaaatgtttatgtgatgaacatataccaagttatagttttt
ctttgtcattattcccttaaatgcccaggaaaacatcatttacaattttg
ggtattctttgagagaaagaagtctctagaacagcctatgttgatatcaa
gggttccaaataatctgagaatttgggtccccaacgatgatttgaaattc
actgctcatagggctcccctggctctaaagaaagaacagaagtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89824487_89825540
seq2: B6Ng01-093E23.b_42_1091 (reverse)

seq1  AGGAGCAGAACTAAAGGTGTAAGGATGAGAACATTGGCTCTCT-TGAGTG  49
      |||||||| |||||||||||||||||||||||||||||| ||| ||||||
seq2  AGGAGCAG-ACTAAAGGTGTAAGGATGAGAACATTGGCT-TCTCTGAGTG  48

seq1  TAAATGCATAGAGATGAGAATAATGGCCATCTTGAAAAACTTTTGGATGA  99
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  T-AATGCATAGAGATGAGAATAATGGCCATCTTGAAAAACCTTTGGATGA  97

seq1  GAATAATGGCTGTCTTGAGGGAAGGGTGGACTTTAAACGTGTAATAAGAT  149
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  G-ATAATGGCTGTC-TGAGGGAAGGGTGGACTTTAAACGTGTAATAAGAT  145

seq1  TATGATCCTCCCCTGAGCAAACTCTGCAGTGTTTCATAAGTAGAACAAGG  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCCT-CCCTGAGCAAACTCTGCAGTGTTTCATAAGTAGAACAAGG  194

seq1  TAGAGATCACCTGCATGAGAGCCATGGACATACAAGATGGTCTAGGGGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCACCTGCATGAGAGCCATGGACATACAAGATGGTCTAGGGGCC  244

seq1  TCTCACAGCTCAGCATCTAGGTCTTTCTTCCTCCTCTGATCAGCAGTCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGCTCAGCATCTAGGTCTTTCTTCCTCCTCTGATCAGCAGTCAA  294

seq1  CACACTCATTTCCTGAGCAAATTAGGAAAACAGGAAATTCACACTGTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATTTCCTGAGCAAATTAGGAAAACAGGAAATTCACACTGTGGG  344

seq1  ACACATACTTTAAGGCTCTGTGCAGCATTTTCCTCTGTGCAG-ACTGTAT  398
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACACATACTTTAAGGCTCTGTGCAGCATTTTCCTCTGTGCAGAACTGTAT  394

seq1  TCTTTTCTGACACTTTTGCCTTTTTAGAATTATGCAAGTATCAGCCCAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGACACTTTTGCCTTTTTAGAATTATGCAAGTATCAGCCCAAA  444

seq1  TATTGCTTCTGATGGGATGCTTATTTTGCAGCCCCTAAGTTTTCCACACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTCTGATGGGATGCTTATTTTGCAGCCCCTAAGTTTTCCACACC  494

seq1  TCAACAGCTTTACTTTCTCCTTTACTCATCAGTCTTTAAATAGGTTGTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCTTTACTTTCTCCTTTACTCATCAGTCTTTAAATAGGTTGTTC  544

seq1  TGTTGTGTCTCTATGTTTACTGCAAGCAAAGGTAGAGTATGAGCTATATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCTCTATGTTTACTGCAAGCAAAGGTAGAGTATGAGCTATATG  594

seq1  AAGGAATAGATCTTTTTATTCTTGCCTAGCTCCAAATCATAGGCATCTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAGATCTTTTTATTCTTGCCTAGCTCCAAATCATAGGCATCTAA  644

seq1  CCCAGGTTGTTGCTCAGTATTACAAACAATACCAGAAGGGCTGATGACAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTGTTGCTCAGTATTACAAACAATACCAGAAGGGCTGATGACAT  694

seq1  CACTTAGTGGGTAAAATGCTTGCTGTCAAGCCTGAGAAGTCAGTCTGTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTGGGTAAAATGCTTGCTGTCAAGCCTGAGAAGTCAGTCTGTAG  744

seq1  CCTCCAAATAGTGAAAGTAGAAAAATGGCAGCCACAAGATGTCCTTTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATAGTGAAAGTAGAAAAATGGCAGCCACAAGATGTCCTTTTTC  794

seq1  CTCCACATAACGCCTGTCACATGTGCACACTTACACTAATATAAACAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATAACGCCTGTCACATGTGCACACTTACACTAATATAAACAAAA  844

seq1  TTTAAAAGTTTATGATAAAAAACAGTCTATGAGTTGTTTGTCATCAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTTATGATAAAAAACAGTCTATGAGTTGTTTGTCATCAGTTT  894

seq1  GACAGAAAGCAAATTGATACAATGAATCTACTTCAATTAAAATAATTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAAGCAAATTGATACAATGAATCTACTTCAATTAAAATAATTTTC  944

seq1  TACTGCTGGGGACATGAGTCACTGTGTAATGTTCATGCCAGAGGCATTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGGGGACATGAGTCACTGTGTAATGTTCATGCCAGAGGCATTGC  994

seq1  TGCATATGTAGTTCGAGTCTTCTTTAGTGAGATGAGAGATAAAGACAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTAGTTCGAGTCTTCTTTAGTGAGATGAGAGATAAAGACAGAA  1044

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1050

seq1: chr17_89705406_89706502
seq2: B6Ng01-093E23.g_67_1161

seq1  GAATTCCAATCTTTTTTGTGAGTTCGAAGAACTTTAGATTTATATGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTTTTTTGTGAGTTCGAAGAACTTTAGATTTATATGGCAC  50

seq1  CCACACTTGTTTTTAGTTTTTATTTCTGTATAGCAACATATCTTAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGTTTTTAGTTTTTATTTCTGTATAGCAACATATCTTAAAATC  100

seq1  TAGACGCTTATAATAAAATTTTACTGTTTTGTTTAAATTTGTGAATTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGCTTATAATAAAATTTTACTGTTTTGTTTAAATTTGTGAATTGGG  150

seq1  AATTCAGGAAAGAGTTGAATGAATTGTTTGCTTTTATAGTTGGGGCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGAAAGAGTTGAATGAATTGTTTGCTTTTATAGTTGGGGCTGTC  200

seq1  ATATATACTCCAAGATCTCTTCTTTATTTAGGGTTATTTTGATCTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACTCCAAGATCTCTTCTTTATTTAGGGTTATTTTGATCTTTCCA  250

seq1  CTTCTCCCCTCCTCTACCTCTTGGCATTTCACTCTTCAGGGTCTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCTCCTCTACCTCTTGGCATTTCACTCTTCAGGGTCTATTAAA  300

seq1  ACATGGGTTGCATTCATTCAATAGTAGGCTTTGAACTGATTTTCTGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTTGCATTCATTCAATAGTAGGCTTTGAACTGATTTTCTGATCA  350

seq1  ACTGGTAACTGGTCTCCTATGGTATTTCCTCATACACTGATGGTCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAACTGGTCTCCTATGGTATTTCCTCATACACTGATGGTCAAAAC  400

seq1  AGAAACAGAGTACACAGAGATTTGAAGTAGAGAAAAAGACAGAACTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAGTACACAGAGATTTGAAGTAGAGAAAAAGACAGAACTAAGA  450

seq1  TGTGATGAGGTCACTTAAAAAACAAAGCATATAGGGAAAAAAACAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAGGTCACTTAAAAAACAAAGCATATAGGGAAAAAAACAACATT  500

seq1  ATATAGCCATTTTTGAAAACTAAAATCCATGATGAAATTAATATGTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCCATTTTTGAAAACTAAAATCCATGATGAAATTAATATGTATCT  550

seq1  GATTAATCAGTACCCAAAGATATTAGTAACAAAAAGTTAGTTAACCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATCAGTACCCAAAGATATTAGTAACAAAAAGTTAGTTAACCCTCT  600

seq1  AGAAATTCTTAGTATAAAAAAAGGTATTCTCTGGTAAAGTTTCTATGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTTAGTATAAAAAAAGGTATTCTCTGGTAAAGTTTCTATGTAG  650

seq1  TCTCTGTGCTACAGAGATGGAAACTCTGCACAATAGGAAGGAACACACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGCTACAGAGATGGAAACTCTGCACAATAGGAAGGAACACACGT  700

seq1  CTACTA-GGAACTCCAAGTTACCTAGCTATTTTCATCATAAATATACAGC  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGGAACTCCAAGTTACCTAGCTATTTTCATCATAAATATACAGC  750

seq1  TTTTAATGCTACATAATCACAAGTGAGGGTCAGTCCCACTTTATATTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGCTACATAATCACAAGTGAGGGTCAGTCCCACTTTATATTGTG  800

seq1  AGTACAGCCAATCTTTTGTATTTGTGTCTCTGGATTCTAGCAGATCAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCAATCTTTTGTATTTGTGTCTCTGGATTCTAGCAGATCAAAA  850

seq1  C-TATCAGGAAAAATGTTTATGTGATGAACATATACCAAG-TATAGTTTT  897
      | ||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  CTTATCAGG-AAAATGTTTATGTGATGAACATATACCAAGTTATAGTTTT  899

seq1  TC-TTGTCATTATTCCCTTAAAATGCCCAGGAAAACATCATTTACAAATT  946
      || |||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  TCTTTGTCATTATTCCCTT-AAATGCCCAGGAAAACATCATTTACAATTT  948

seq1  TGGGTATCCTTGGAGAGAAAGAAGTCTCTAGAACAAGCCCTATGTGGATA  996
      ||||||| ||| |||||||||||||||||||||||   ||||||| ||||
seq2  TGGGTATTCTTTGAGAGAAAGAAGTCTCTAGAACA--GCCTATGTTGATA  996

seq1  TCAAGGGTTCCAAATAATCTGAAGAATTTGTGTCCCCAACGATGATTTTG  1046
      ||||||||||||||||||||| |||||||| |||||||||||||||||  
seq2  TCAAGGGTTCCAAATAATCTG-AGAATTTGGGTCCCCAACGATGATTT--  1043

seq1  GAGAAATTCACTGCTGATAGGTCT-CCCTGACT-TAAAG-AAGAACAGGA  1093
        ||||||||||||| ||||| || ||||| || ||||| |||||||| |
seq2  --GAAATTCACTGCTCATAGGGCTCCCCTGGCTCTAAAGAAAGAACAGAA  1091

seq1  GTGC  1097
      ||||
seq2  GTGC  1095