BAC Information

Click to search

BAC

Clone NameB6Ng01-093L10
Chromosome17 (Build37)
Map Location 16,109,650 - 16,110,549
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093L10.bB6Ng01-093L10.g
ACCDH905125DH905126
length1,225896
definitionDH905125|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L10, 5' end.DH905126|Mus musculus domesticus DNA, BAC clone: B6Ng01-093L10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatg
gggctcagaactgaacaaagaattctcacctgaggaataccgaatggcag
agaagcacctgaataaatgttcaacatccttaatcatcagggaaatgcaa
atcaaaacaaccctgagattccacctcacaccagtcagaatggctaagat
caaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaa
cactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaa
tcagtctggcggttcctcagaaaactggacatagtactaccggaggatcc
agcaatacctctcctgggcatatatccagaagatgccccaacaggtaaga
aggacacatgctccactatgttcatagcagccttatttataatagccaga
agctggaaagaacctagatgcccctcaacagaggaatggatacagaaaat
gtggtacatctacacaatggagtactactcagctattaaaaagaatgaat
ttatgaaattcctagccaaatggatggacctggagggcatcatcctgagt
gaggtaacacattcacaaagaaactcacacaatatgtattcactgataag
tggatattagccccaaacctaggatacccaagatataagatataatttgc
taaacacatgaaactcaagaagaatgaagactgaaatgtggacactatgc
ccctccttagatttgggaacaaaacacccatggaaggagttacagagacg
gagtttggagctgagatgaaaggatggaccatgtagagactgccatatcc
aggatccaccccataatcagcatccaaacgctgacaccattgcatacact
agcaagattttattgaaaggacgcagatgtagctgtctcttgtgagacta
tgccggggctcagcaaacaagaagtgatgctcacagtcagctaatggatg
gatcatagggctccaatgagagctagagaagtagccaagagctaaggatc
tgcaccttatagtgaacaacattatgagcttaccagtaccgagctcttga
cttactgcatttatatcaaagatgctagtcggtcatcctggtaagaaggt
ccatggatgcaacttatatggtctcagtaccggtaaaccaggcccaatgg
gagattggttgcgtcatgaggtaag
gaattcattgtatctcacagccaataaaatcttcctcctgaggttttgat
gtatgagctgctttaacttcaaaaggaaacgtctgtggcatttaacttct
gtctctgatcagcattagaagacaattgcacttaatatcttctgcatcgt
gaagccttcagaattagagaagccatgagtatgaagaataagaaccttta
ggagacgaaactatgtagggtttcttgagtaaaggttgcaataactaaat
tcttattccttcatggaaaaaaatttaaaaagattacatgtttactaaat
cttgagtataaaatagtatgattgatgttgtataaatgtatataaaattt
aatgtcaataaactagctgtaggggagaattatcaattataaaaccttcc
agaaacttctagagaccacttatttcctagacatatattctggtgatgca
gaaaaatacagacatggtttgacagaaaaaggaacctcagcattgaggtt
ttgttttttactgtctattgtgatgttaagtgcaaggccccaagacctgg
agtctgcatgcagcccttgtgaccttctccccatgttaatcctgattgat
gaataaacatgccaagagccaatatctgggcagaagagacataggtgggg
ttgaagtttcatgggcttgggtcagagagagggccacaaagaggaggagg
aaaaggaggaagaggaaaaggaggaagaggaaaaggaggggaggagagaa
aagcccccatagagtagaagaatgtgcagaaaggagaaaggagaagtggc
cttggataaggttcagagagagtggccctaaggcagctcaattggcgcta
gagcagcccagatggacatagtagatgtaagtattatactcgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16109650_16110549
seq2: B6Ng01-093L10.g_70_965

seq1  GAATTCATTGTATCTCACAGCCAATAAAATCTTCCTCCTGAGGTTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTATCTCACAGCCAATAAAATCTTCCTCCTGAGGTTTTGAT  50

seq1  GTATGAGCTGCTTTAACTTCAAAAGGAAACGTCTGTGGCATTTAACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCTGCTTTAACTTCAAAAGGAAACGTCTGTGGCATTTAACTTCT  100

seq1  GTCTCTGATCAGCATTAGAAGACAATTGCACTTAATATCTTCTGCATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGATCAGCATTAGAAGACAATTGCACTTAATATCTTCTGCATCGT  150

seq1  GAAGCCTTCAGAATTAGAGAAGCCATGAGTATGAAGAATAAGAACCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTCAGAATTAGAGAAGCCATGAGTATGAAGAATAAGAACCTTTA  200

seq1  GGAGACGAAACTATGTAGGGTTTCTTGAGTAAAGGTTGCAATAACTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACGAAACTATGTAGGGTTTCTTGAGTAAAGGTTGCAATAACTAAAT  250

seq1  TCTTATTCCTTCATGGAAAAAAATTTAAAAAGATTACATGTTTACTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCTTCATGGAAAAAAATTTAAAAAGATTACATGTTTACTAAAT  300

seq1  CTTGAGTATAAAATAGTATGATTGATGTTGTATAAATGTATATAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTATAAAATAGTATGATTGATGTTGTATAAATGTATATAAAATTT  350

seq1  AATGTCAATAAACTAGCTGTAGGGGAGAATTATCAATTATAAAACCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAATAAACTAGCTGTAGGGGAGAATTATCAATTATAAAACCTTCC  400

seq1  AGAAACTTCTAGAGACCACTTATTTCCTAGACATATATTCTGGTGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCTAGAGACCACTTATTTCCTAGACATATATTCTGGTGATGCA  450

seq1  GAAAAATACAGACATGGTTTGACAGAAAAAGGAACCTCAGCATTGAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACAGACATGGTTTGACAGAAAAAGGAACCTCAGCATTGAGGTT  500

seq1  TTGTTTTTTACTGTCTATTGTGATGTTAAGTGCAAGGCCCCAAGACCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTACTGTCTATTGTGATGTTAAGTGCAAGGCCCCAAGACCTGG  550

seq1  AGTCTGCATGCAGCCCTTGTGACCTTCTCCCCATGTTAATCCTGATTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCATGCAGCCCTTGTGACCTTCTCCCCATGTTAATCCTGATTGAT  600

seq1  GAATAAACATGCCAAGAGCCAATATCTGGGCAGAAGAGACATAGGTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACATGCCAAGAGCCAATATCTGGGCAGAAGAGACATAGGTGGGG  650

seq1  TTGAAGTTTCATGGGCTTGGGTCAGAGAGAGGGCCACAAAGAGGAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTTCATGGGCTTGGGTCAGAGAGAGGGCCACAAAGAGGAGGAGG  700

seq1  AAAAGGAGGAAGAGGAAAAGGAGGAAGAGGAAAAGGAGGGGAGGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGAAGAGGAAAAGGAGGAAGAGGAAAAGGAGGGGAGGAGAGAA  750

seq1  AAGCCACCATAGAGTAGAAGAATGTGCAGGAAAGGAGAAAGGAGAAGTGG  800
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCCCCCATAGAGTAGAAGAATGTGCA-GAAAGGAGAAAGGAGAAGTGG  799

seq1  CCATAGGATAAAGGTCAGAGAGAAGGGCCCTAAGGGCAGCTCAATTGGCG  850
      || | |||||| | |||||||||  |||||||| ||||||||||||||||
seq2  CC-TTGGATAAGGTTCAGAGAGAGTGGCCCTAA-GGCAGCTCAATTGGCG  847

seq1  CTAAGAGCAGCCCAGATGGAACATAGTAGATGTAAGTAATA-ACTCGGGT  899
      || |||||||||||||||| |||||||||||||||||| || ||||||||
seq2  CT-AGAGCAGCCCAGATGG-ACATAGTAGATGTAAGTATTATACTCGGGT  895

seq1  T  900
      |
seq2  T  896