BAC Information

Click to search

BAC

Clone NameB6Ng01-094E17
Chromosome17 (Build37)
Map Location 81,958,127 - 82,114,208
singlet/doubletdoublet
Overlap geneSlc8a1
Upstream geneCdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094E17.bB6Ng01-094E17.g
ACCDH905555DH905556
length1,1091,155
definitionDH905555|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E17, 5' end.DH905556|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,113,099 - 82,114,208)(81,958,127 - 81,959,284)
sequence
gaattcactgctccctcgcactcctataactaaatactaccctgttatat
tcaaatcttcatattcagaatatgcacagccttttaaatgactatgactc
attaagcatctcaaggacatccatctttgcttactaaaaacttattagaa
tgctgggttatccagtgagttacaatcaaccttgaatgcattaatgtatt
tatattcacagagagaaataaggtgtatgcattccagatttaggcaaaca
aacaattagagcatatgaaattagtattaaatgatctgaaaactgcacaa
caaaattattatgtgcttgttaccatctgaaatggtagaacttcaattta
aaatctccacctacaaggcaaggttaaaacaataacagaaactacctttc
tgtcttccactgagccctatgtcttcaagtcaagcacattgcatatgccc
tcgtaagcatgttaatgcatctttcaagcgaccaaccctgcttggacaat
gcatattttccttgaaagtaaataacatacatacaatttcaccagtctca
tgagggaaaagaaaatcttctgcagagttctcatcaaacttatcataaga
atttctagatggttaagggagccaactatacatttctctttcatgttcag
catagacttaatgacaccatgtaaaaatgtttggagtatgtcatgtgagg
aagagagcctccctctctttacaggggctataaagtgtgtagaatgactt
ttcagtagcctaataccatgccagctccttgggaatctgggggactgttt
tatggtgctaggttagggcttattggtctgtgagaactccgctagcaagc
cttctgatcctctttgctaactctaagtccacagacatagagaccccgct
caaatgggaagagatggatatttgtctttggactttgtgcttttccctgc
ccagtactcctccaaacaaagtgtcctcagtcaaaagtaaacccaaacat
tttatcctattctgcagccaccatcttccaatagcctctgtaagacccac
tggagaacagaatggatcagtgccaataccttttatatctttctgatccc
agattccca
gaattcattcataaaagatttgaggatcttctaaacatggaccacagggt
tgaaacttaatgagcttaaagtcattagcacggagcttctgacttctcac
tggacgctgaaaacagttggcagtcacacgacaagggtcagaagcgtatg
ggtttataaaacggaaatgctcaggaaaatcacagaatggcaaccccact
tgattttgaaacaactatcagataggcttcacatctaaggaaaggctact
tcaggatgctttaaaacctacaccattatttaagtttcttgctatacgca
caaatagcatcaaacattcattttccactaatattgaaggaatattaaat
ccttgtgctaaatatcacttaatgtgaactatttcatctagttgttaaga
atgaactgttttttatctcctcaaagaggccattatgttttatgcacagg
gacaaaaactaagtcataggacagtcttctagcctggtctcttcctttct
tcccttccaccctctttcccttcctctctctccccctccctccctctacc
cctccttccctctgttccttccacctcttttttcctcccttccttcttct
cacacccaccatttcatcttctctctttctctcaattagtagcataaaaa
cgaaatcagaattttatcagaaaccttcaactggtaatcacctataaaca
tggtacctgaaagtgggtgtcatagtgacagagatgtttgttgtcaaagc
atggcattcctagactgttttcatgaggtggtgctgactctgcctggccc
ctgcagtcagtacaggacacagtatctatacatgtggtggtaagatgcaa
cccttcctcttctctttcccacactcgatctgtgtccagataacatgctc
atcacactacactctgatacccttgaggtctttagtcttgggactcttct
gcacacgagtccaatgactcctgcaaaaaaatcacctaatgagataagct
ctttactttaaaggcctgtttttctcaaaacaaaacaaaacagttaaaat
taaacacccaacaaaccaaccaacaacaaacaaatcttggaatggtgata
tcaggtagtaggtatcggtttattctagaaaaaataaacagcctttcctc
tttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82113099_82114208
seq2: B6Ng01-094E17.b_48_1156 (reverse)

seq1  TGGGAATCTGGGAATCAAGAAAGATATAAAATGATTTGCAACTGATCCA-  49
      |||||||||||| ||| |||||||||||||| |  |||  ||||||||| 
seq2  TGGGAATCTGGG-ATC-AGAAAGATATAAAAGGTATTGGCACTGATCCAT  48

seq1  TCTG-TCTCCAGTGGGTGCCTACAGA-GCTATT-GAAGATGGTGGGCCTG  96
      |||| |||||||||||| | |||||| |||||| |||||||||||  |||
seq2  TCTGTTCTCCAGTGGGT-CTTACAGAGGCTATTGGAAGATGGTGG--CTG  95

seq1  CAAGAATA-GATAATATG-TTGGGTTTACTTTTGGACTGAGGACACTTTG  144
      | |||||| ||||| ||| |||||||||||||| ||||||||||||||||
seq2  C-AGAATAGGATAAAATGTTTGGGTTTACTTTT-GACTGAGGACACTTTG  143

seq1  TTTGGA-GAGTACTGGGCAGGGAGAAGCACAAAGTCCAAAGAACAAATAT  193
      |||||| |||||||||||||||| ||||||||||||||||| ||||||||
seq2  TTTGGAGGAGTACTGGGCAGGGAAAAGCACAAAGTCCAAAG-ACAAATAT  192

seq1  CCATCTCTTCCCATTTGAGCGGGGTCTCTATGTCTGTGGACTTAGAGTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTCCCATTTGAGCGGGGTCTCTATGTCTGTGGACTTAGAGTTA  242

seq1  GC-AAGAGGATCAGAAGGCTTGCTAGCGGAGTTCTCACAGACCAATAAGC  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGATCAGAAGGCTTGCTAGCGGAGTTCTCACAGACCAATAAGC  292

seq1  CCTAACCTAGCACCATTAAAACAGTCCCCCAGATTCCCAAGGAGCTGGCA  342
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTAACCTAGCACCA-TAAAACAGTCCCCCAGATTCCCAAGGAGCTGGCA  341

seq1  TGGTATTAGGCTACTGAAAAGTCATTCTACACACTTTATAGCCCCTGTAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTAGGCTACTGAAAAGTCATTCTACACACTTTATAGCCCCTGTAA  391

seq1  AGAGAGGGAGGCTCTCTTCCTCACATGACATACTCCAAACATTTTTACAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAGGCTCTCTTCCTCACATGACATACTCCAAACATTTTTACAT  441

seq1  GGTGTCATTAAGTCTATGCTGAACATGAAAGAGAAATGTATAGTTGGCTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCATTAAGTCTATGCTGAACATGAAAGAGAAATGTATAGTTGGCTC  491

seq1  CCTTAACCATCTAGAAATTCTTATGATAAGTTTGATGAGAACTCTGCAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACCATCTAGAAATTCTTATGATAAGTTTGATGAGAACTCTGCAGA  541

seq1  AGATTTTCTTTTCCCTCATGAGACTGGTGAAATTGTATGTATGTTATTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTCTTTTCCCTCATGAGACTGGTGAAATTGTATGTATGTTATTTA  591

seq1  CTTTCAAGGAAAATATGCATTGTCCAAGCAGGGTTGGTCGCTTGAAAGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGGAAAATATGCATTGTCCAAGCAGGGTTGGTCGCTTGAAAGAT  641

seq1  GCATTAACATGCTTACGAGGGCATATGCAATGTGCTTGACTTGAAGACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAACATGCTTACGAGGGCATATGCAATGTGCTTGACTTGAAGACAT  691

seq1  AGGGCTCAGTGGAAGACAGAAAGGTAGTTTCTGTTATTGTTTTAACCTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCAGTGGAAGACAGAAAGGTAGTTTCTGTTATTGTTTTAACCTTG  741

seq1  CCTTGTAGGTGGAGATTTTAAATTGAAGTTCTACCATTTCAGATGGTAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGGTGGAGATTTTAAATTGAAGTTCTACCATTTCAGATGGTAAC  791

seq1  AAGCACATAATAATTTTGTTGTGCAGTTTTCAGATCATTTAATACTAATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATAATAATTTTGTTGTGCAGTTTTCAGATCATTTAATACTAATT  841

seq1  TCATATGCTCTAATTGTTTGTTTGCCTAAATCTGGAATGCATACACCTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCTCTAATTGTTTGTTTGCCTAAATCTGGAATGCATACACCTTA  891

seq1  TTTCTCTCTGTGAATATAAATACATTAATGCATTCAAGGTTGATTGTAAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGTGAATATAAATACATTAATGCATTCAAGGTTGATTGTAAC  941

seq1  TCACTGGATAACCCAGCATTCTAATAAGTTTTTAGTAAGCAAAGATGGAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGATAACCCAGCATTCTAATAAGTTTTTAGTAAGCAAAGATGGAT  991

seq1  GTCCTTGAGATGCTTAATGAGTCATAGTCATTTAAAAGGCTGTGCATATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAGATGCTTAATGAGTCATAGTCATTTAAAAGGCTGTGCATATT  1041

seq1  CTGAATATGAAGATTTGAATATAACAGGGTAGTATTTAGTTATAGGAGTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATGAAGATTTGAATATAACAGGGTAGTATTTAGTTATAGGAGTG  1091

seq1  CGAGGGAGCAGTGAATTC  1110
      ||||||||||||||||||
seq2  CGAGGGAGCAGTGAATTC  1109

seq1: chr17_81958127_81959284
seq2: B6Ng01-094E17.g_72_1226

seq1  GAATTCATTCATAAAAGATTTGAGGATCTTCTAAACATGGACCACAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATAAAAGATTTGAGGATCTTCTAAACATGGACCACAGGGT  50

seq1  TGAAACTTAATGAGCTTAAAGTCATTAGCACGGAGCTTCTGACTTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAATGAGCTTAAAGTCATTAGCACGGAGCTTCTGACTTCTCAC  100

seq1  TGGACGCTGAAAACAGTTGGCAGTCACACGACAAGGGTCAGAAGCGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCTGAAAACAGTTGGCAGTCACACGACAAGGGTCAGAAGCGTATG  150

seq1  GGTTTATAAAACGGAAATGCTCAGGAAAATCACAGAATGGCAACCCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAAAACGGAAATGCTCAGGAAAATCACAGAATGGCAACCCCACT  200

seq1  TGATTTTGAAACAACTATCAGATAGGCTTCACATCTAAGGAAAGGCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGAAACAACTATCAGATAGGCTTCACATCTAAGGAAAGGCTACT  250

seq1  TCAGGATGCTTTAAAACCTACACCATTATTTAAGTTTCTTGCTATACGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGCTTTAAAACCTACACCATTATTTAAGTTTCTTGCTATACGCA  300

seq1  CAAATAGCATCAAACATTCATTTTCCACTAATATTGAAGGAATATTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCATCAAACATTCATTTTCCACTAATATTGAAGGAATATTAAAT  350

seq1  CCTTGTGCTAAATATCACTTAATGTGAACTATTTCATCTAGTTGTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTAAATATCACTTAATGTGAACTATTTCATCTAGTTGTTAAGA  400

seq1  ATGAACTGTTTTTTATCTCCTCAAAGAGGCCATTATGTTTTATGCACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGTTTTTTATCTCCTCAAAGAGGCCATTATGTTTTATGCACAGG  450

seq1  GACAAAAACTAAGTCATAGGACAGTCTTCTAGCCTGGTCTCTTCCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACTAAGTCATAGGACAGTCTTCTAGCCTGGTCTCTTCCTTTCT  500

seq1  TCCCTTCCACCCTCTTTCCCTTCCTCTCTCTCCCCCTCCCTCCCTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCACCCTCTTTCCCTTCCTCTCTCTCCCCCTCCCTCCCTCTACC  550

seq1  CCTCCTTCCCTCTGTTCCTTCCACCTCTTTTTTCCTCCCTTCCTTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCCTCTGTTCCTTCCACCTCTTTTTTCCTCCCTTCCTTCTTCT  600

seq1  CACACCCACCATTTCATCTTCTCTCTTTCTCTCAATTAGTAGCATAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACCATTTCATCTTCTCTCTTTCTCTCAATTAGTAGCATAAAAA  650

seq1  CGAAATCAGAATTTTATCAGAAACCTTCAACTGGTAATCACCTATAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCAGAATTTTATCAGAAACCTTCAACTGGTAATCACCTATAAACA  700

seq1  TGGTACCTGAAAGTGGGTGTCATAGTGACAGAGATGTTTGTTGTCAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTGAAAGTGGGTGTCATAGTGACAGAGATGTTTGTTGTCAAAGC  750

seq1  ATGGCATTCCTAGACTGTTTTCATGAGGTGGTGCTGACTCTGCCTGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCCTAGACTGTTTTCATGAGGTGGTGCTGACTCTGCCTGGCCC  800

seq1  CTGCAGTCAGTACAGGACACAGTATCTATACATGTGGTGGTAAGATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCAGTACAGGACACAGTATCTATACATGTGGTGGTAAGATGCAA  850

seq1  CCCTTCCTCTTCTCTTTCCCACACTCGATCTGTGTCCAGATAACATGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTTCTCTTTCCCACACTCGATCTGTGTCCAGATAACATGCTC  900

seq1  ATCACACTACACTCTGATACCCTTGAGGTCTTTAGTCTT-GGACTCTTCT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCACACTACACTCTGATACCCTTGAGGTCTTTAGTCTTGGGACTCTTCT  950

seq1  GCACACGAGTCCAATGACTCCTGCAAAAAAAATCACCTAATGAGATAAGC  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCACACGAGTCCAATGACTCCTGC-AAAAAAATCACCTAATGAGATAAGC  999

seq1  TCTTTAC-TTAAAGGCCTGTTTTCTTCAAAGACAAAACAAAACAAGTAAA  1048
      ||||||| |||||||||||||||  ||||| |||||||||||||  |  |
seq2  TCTTTACTTTAAAGGCCTGTTTTTCTCAAA-ACAAAACAAAACAGTT--A  1046

seq1  AAATAAAACACCAAACAAACAAACAAACAAACAAACAAATCTTGAAAT-G  1097
      |||| ||||||| ||||||| ||| ||| ||||||||||||||| ||| |
seq2  AAATTAAACACCCAACAAACCAACCAAC-AACAAACAAATCTTGGAATGG  1095

seq1  TGA-ATCAATGTAGTAGGTATTTGGTTTATTCTTAGAAAAATATAGCAG-  1145
      ||| ||| | |||||||||| | ||||||||| ||||||||   | ||| 
seq2  TGATATC-AGGTAGTAGGTA-TCGGTTTATTC-TAGAAAAAATAAACAGC  1142

seq1  CTTTCCTCTTTAA  1158
      |||||||||||||
seq2  CTTTCCTCTTTAA  1155