BAC Information

Click to search

BAC

Clone NameB6Ng01-094I22
Chromosome17 (Build37)
Map Location 15,448,000 - 15,552,635
singlet/doubletdoublet
Overlap geneLOC664953, Dll1, LOC100041314, 4932442K08Rik
Upstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19
Downstream genePsmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094I22.bB6Ng01-094I22.g
ACCDH905745DH905746
length1,1401,086
definitionDH905745|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I22, 5' end.DH905746|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,551,470 - 15,552,635)(15,448,000 - 15,449,104)
sequence
gaattcaccattgaaacaaacatctggacatggctgttgggagtctctaa
actgggttagccaaaatggaagaaccaaccccaatgtaggtggaaccatt
ttgtgggcaacagtcccaggctgaataaaaacaagaaaatatgcatagca
ccagcatttattattctgcccatgaataggatcaactgccttgagcccat
gctaccatggccttgctgttctccctgtcatgatggattgtcccctcaaa
ctctgagccacagtaatgtctttcctagtgtggctttggccagggatttt
actgtaccaataatcaaagtaaaaactataatgcatgtccaagatttcct
caaatcagacacacccacatggtggctcacatccaaccgtatctccagtt
ccagagaatctaaacccctcttctgacctccatgggtaccaggcacatag
gcagtgcacacaaacatgggatgggtggaacaaaatactcatatacttaa
aatgaaatatttttaaaaaggcaatttaagttcaactatataaaattata
ttttatgatctatacttctaggcttgccacagtttctgagaaaagtcaac
actgtgaacaaacatgtacaccacttacttatcgatacactaatcccttg
ctgtgaaaagtcctgacttgtcatctccatgagcaccttgaaggactaat
tgtgttctgtggaaagagaccacgggacctggccatagaaacacgcacag
cactccgggaaggtaaaggccagagacaaagggctctctatatcatacag
aactgtaagctcagcgtgtacctggacaaagaggtagatcaggaggcagc
acagcgctctcaacgggctctcaactgcttgcagctcttctcttgaggag
gaaaggttgaagcagctagcaggtgtccaggcgctgggcctgcactgctg
ctcttggctcagccacagaacttccaagctaggtgttcctcctaaacgag
aaatccatgcagcatgatcgtatacacttttggagtacagtgagatgcgt
catctcttcctacctgaattacttggcactcaggtacgaccgaaggcagc
tctcagttcagaagagacttattcagcacagacccactca
gaattctccatagcttccattgccctaatttttttggactggtgttttcc
tgcgtctttgttgttgttgttgttttttttttattgtttttgttttattg
gtcttttagacaagacgcccaagctaaactacaactttgtctcagcctcc
agagcatttgcattacaagtatgtgccatcatgttttctgaagacataaa
taacccccagaagtgactggaaggtgggtgggacaactttcaatttccaa
aggcattgcagtaccagcatgatccctgctgaaggtgacctattccctga
gaccatcagccagaagggaaatagccactgagtccccaaggactctggaa
tggtgagagacatgaagacaaaggctgcagcaaagtcagggtcagggaaa
cgactgtcccaggacccgggctagacaccttaggccaatctgtttcagtg
ggcatcagactctagagcagcatagcccatgggttgtgacccctttgagg
gttgcaaatcagataacctgcatatctggtatgtgcattatgctttataa
ctagtaaaggtccagcaatgaaataattttatggttgggggtcaccacca
cgtgaggggctgtattaaagggtcgtagcgttatgaaggttgagaaccac
cgttctagaggtacccccgatagaagggtcttagcagcaacacgctgtta
cctatgaataatggctcttatgtccatttaaagaaacccagggccaggca
ggtggaagttcctcagactctttccctcctcttttctgtaggcagtgtga
cattgtctccagcaaggaggtcacaggtcatcttctgcctagctcacact
tgctctgtccaagaacctgaggtcaatggagaaaatactgctcaaggagc
catggagaaatggcagatagactgttcacatcgtactgagttgcagctgg
cactagcatggtgcggagccacccactcagcactcagtacagccacgctc
gctgttgtacaggctatatgctgatcaaagagtacaggacttattacgaa
gctaatgaaggaatggagagcttgccttgataggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15551470_15552635
seq2: B6Ng01-094I22.b_43_1182 (reverse)

seq1  TGAGTGGGTCTGTGCTGGCACTTAAGGTCTCTTTTCTTTGAAACTGAGAA  50
      |||||||||||||||||     ||||   ||| ||||    ||||||| |
seq2  TGAGTGGGTCTGTGCTG---AATAAG---TCTCTTCT---GAACTGAG-A  40

seq1  GCTGCCCTCTGGTTCTGTTAACCCTTGAGTGCCCAAGTAAATCAGGTAGG  100
      |||||| || |||  |    |||  |||||| |||||||| ||||||| |
seq2  GCTGCCTTC-GGTCGT----ACC--TGAGTG-CCAAGTAATTCAGGTA-G  81

seq1  GAAGAGATGACGCATTCTTCACTGTACTTCCAAAAGTGTATTACGATCAT  150
      |||||||||||||||   ||||||||| |||||||||||| |||||||||
seq2  GAAGAGATGACGCAT--CTCACTGTAC-TCCAAAAGTGTA-TACGATCAT  127

seq1  GCTGCATGGATTTCTCGTTTTAGGGGGAACACCTAGCTTGGAAGTTCTGT  200
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  GCTGCATGGATTTCTCG-TTTAGGAGGAACACCTAGCTTGGAAGTTCTGT  176

seq1  GGCTGAGCCAAGAGCCAGCAGTGCAGGCCCAGCGCCTGGACACCTTGCTA  250
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  GGCTGAGCCAAGAG-CAGCAGTGCAGGCCCAGCGCCTGGACACC-TGCTA  224

seq1  GCCTGCTTCAACCTTTCCTCCTCAAGAGAAGAGCTGCAAGCAGTTGAGAG  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CTGCTTCAACCTTTCCTCCTCAAGAGAAGAGCTGCAAGCAGTTGAGAG  273

seq1  CCCGTTGAGAGCGCTGTGCTGCCTCCTGATCTACCTCTTTGTCCAGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGAGAGCGCTGTGCTGCCTCCTGATCTACCTCTTTGTCCAGGTAC  323

seq1  ACGCTGAGCTTACAGTTCTGTATGATATAGAGAGCCCTTTGTCTCTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGAGCTTACAGTTCTGTATGATATAGAGAGCCCTTTGTCTCTGGCC  373

seq1  -TTACCTTCCCGGAGTGCTGTGCGTGTTTCTATGGCCAGGTCCCGTGGTC  449
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTCCCGGAGTGCTGTGCGTGTTTCTATGGCCAGGTCCCGTGGTC  423

seq1  TCTTTCCACAGAACACAATTAGTCCTTCAAGGTGCTCATGGAGATGACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACAGAACACAATTAGTCCTTCAAGGTGCTCATGGAGATGACAA  473

seq1  GTCAGGACTTTTCACAGCAAGGGATTAGTGTATCGATAAGTAAGTGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGACTTTTCACAGCAAGGGATTAGTGTATCGATAAGTAAGTGGTGT  523

seq1  ACATGTTTGTTCACAGTGTTGACTTTTCTCAGAAACTGTGGCAAGCCTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTGTTCACAGTGTTGACTTTTCTCAGAAACTGTGGCAAGCCTAG  573

seq1  AAGTATAGATCATAAAATATAATTTTATATAGTTGAACTTAAATTGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGATCATAAAATATAATTTTATATAGTTGAACTTAAATTGCCTT  623

seq1  TTTAAAAATATTTCATTTTAAGTATATGAGTATTTTGTTCCACCCATCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATTTCATTTTAAGTATATGAGTATTTTGTTCCACCCATCCC  673

seq1  ATGTTTGTGTGCACTGCCTATGTGCCTGGTACCCATGGAGGTCAGAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTGCACTGCCTATGTGCCTGGTACCCATGGAGGTCAGAAGAG  723

seq1  GGGTTTAGATTCTCTGGAACTGGAGATACGGTTGGATGTGAGCCACCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGATTCTCTGGAACTGGAGATACGGTTGGATGTGAGCCACCATG  773

seq1  TGGGTGTGTCTGATTTGAGGAAATCTTGGACATGCATTATAGTTTTTACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGTCTGATTTGAGGAAATCTTGGACATGCATTATAGTTTTTACT  823

seq1  TTGATTATTGGTACAGTAAAATCCCTGGCCAAAGCCACACTAGGAAAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATTGGTACAGTAAAATCCCTGGCCAAAGCCACACTAGGAAAGAC  873

seq1  ATTACTGTGGCTCAGAGTTTGAGGGGACAATCCATCATGACAGGGAGAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTGGCTCAGAGTTTGAGGGGACAATCCATCATGACAGGGAGAAC  923

seq1  AGCAAGGCCATGGTAGCATGGGCTCAAGGCAGTTGATCCTATTCATGGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCATGGTAGCATGGGCTCAAGGCAGTTGATCCTATTCATGGGC  973

seq1  AGAATAATAAATGCTGGTGCTATGCATATTTTCTTGTTTTTATTCAGCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATAAATGCTGGTGCTATGCATATTTTCTTGTTTTTATTCAGCCT  1023

seq1  GGGACTGTTGCCCACAAAATGGTTCCACCTACATTGGGGTTGGTTCTTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTTGCCCACAAAATGGTTCCACCTACATTGGGGTTGGTTCTTCC  1073

seq1  ATTTTGGCTAACCCAGTTTAGAGACTCCCAACAGCCATGTCCAGATGTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCTAACCCAGTTTAGAGACTCCCAACAGCCATGTCCAGATGTTT  1123

seq1  GTTTCAATGGTGAATTC  1166
      |||||||||||||||||
seq2  GTTTCAATGGTGAATTC  1140

seq1: chr17_15448000_15449104
seq2: B6Ng01-094I22.g_68_1153

seq1  GAATTCTCCATAGCTTCCATTGCCCTAATTTTTTTGGACTGGTGTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATAGCTTCCATTGCCCTAATTTTTTTGGACTGGTGTTTTCC  50

seq1  TGCGTCTTTGTTGTTGTTGTTGTTTTTTTTTTATTGTTTTTGTTTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTTTGTTGTTGTTGTTGTTTTTTTTTTATTGTTTTTGTTTTATTG  100

seq1  GTCTTTTAGACAAGACGCCCAAGCTAAACTACAACTTTGTCTCAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAGACAAGACGCCCAAGCTAAACTACAACTTTGTCTCAGCCTCC  150

seq1  AGAGCATTTGCATTACAAGTATGTGCCATCATGTTTTCTGAAGACATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTGCATTACAAGTATGTGCCATCATGTTTTCTGAAGACATAAA  200

seq1  TAACCCCCAGAAGTGACTGGAAGGTGGGTGGGACAACTTTCAATTTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCCAGAAGTGACTGGAAGGTGGGTGGGACAACTTTCAATTTCCAA  250

seq1  AGGCATTGCAGTACCAGCATGATCCCTGCTGAAGGTGACCTATTCCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGCAGTACCAGCATGATCCCTGCTGAAGGTGACCTATTCCCTGA  300

seq1  GACCATCAGCCAGAAGGGAAATAGCCACTGAGTCCCCAAGGACTCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCAGCCAGAAGGGAAATAGCCACTGAGTCCCCAAGGACTCTGGAA  350

seq1  TGGTGAGAGACATGAAGACAAAGGCTGCAGCAAAGTCAGGGTCAGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAGACATGAAGACAAAGGCTGCAGCAAAGTCAGGGTCAGGGAAA  400

seq1  CGACTGTCCCAGGACCCGGGCTAGACACCTTAGGCCAATCTGTTTCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGTCCCAGGACCCGGGCTAGACACCTTAGGCCAATCTGTTTCAGTG  450

seq1  GGCATCAGACTCTAGAGCAGCATAGCCCATGGGTTGTGACCCCTTTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGACTCTAGAGCAGCATAGCCCATGGGTTGTGACCCCTTTGAGG  500

seq1  GTTGCAAATCAGATAACCTGCATATCTGGTATGTGCATTATGCTTTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAATCAGATAACCTGCATATCTGGTATGTGCATTATGCTTTATAA  550

seq1  CTAGTAAAGGTCCAGCAATGAAATAATTTTATGGTTGGGGGTCACCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAGGTCCAGCAATGAAATAATTTTATGGTTGGGGGTCACCACCA  600

seq1  CGTGAGGGGCTGTATTAAAGGGTCGTAGCGTTATGAAGGTTGAGAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGGGCTGTATTAAAGGGTCGTAGCGTTATGAAGGTTGAGAACCAC  650

seq1  CGTTCTAGAGGTACCCCCGATAGAAGGGTCTTAGCAGCAACACGCTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTAGAGGTACCCCCGATAGAAGGGTCTTAGCAGCAACACGCTGTTA  700

seq1  CCTATGAATAATGGCTCTTATGTCCATTTAAAGAAACCCAGGGCCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAATAATGGCTCTTATGTCCATTTAAAGAAACCCAGGGCCAGGCA  750

seq1  GGTGGAAGTTCCTCAGACTCTTTCCCTCCTCTTTTCTGTAGGCAGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGTTCCTCAGACTCTTTCCCTCCTCTTTTCTGTAGGCAGTGTGA  800

seq1  CATTGTCTCCAGCAAGGAGGTCACAGGTCATCTTCTGCCTAGCTCACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTCCAGCAAGGAGGTCACAGGTCATCTTCTGCCTAGCTCACACT  850

seq1  TGCTCTGTCCAAGAACCTGAGGTCAATGGAG-AAATACTGCTCAAGGGAA  899
      ||||||||||||||||||||||||||||||| |||||||||||||||  |
seq2  TGCTCTGTCCAAGAACCTGAGGTCAATGGAGAAAATACTGCTCAAGG--A  898

seq1  GCCATGGAGAAATGGCAAGGATAGGACTGTTCACATCGTACTGAGTTGCA  949
      |||||||||||||||||  |||| ||||||||||||||||||||||||||
seq2  GCCATGGAGAAATGGCA--GATA-GACTGTTCACATCGTACTGAGTTGCA  945

seq1  GCTGGCACTAGCATGTGGCGGGAGCCACCCACTCAGCCACTCAGTACAGC  999
      |||||||||||||||  || |||||||||||||||| |||||||||||||
seq2  GCTGGCACTAGCATGGTGC-GGAGCCACCCACTCAG-CACTCAGTACAGC  993

seq1  CACGCCTCGCCTGTTGTAAACAGCTATTATTGCTGATCAAAGAGTTACAA  1049
      |||| |||| |||||||| |  |||||   |||||||||||||| ||| |
seq2  CACG-CTCG-CTGTTGTACA-GGCTAT--ATGCTGATCAAAGAG-TAC-A  1036

seq1  GGACTTAATTACAGAGCTTTAAAATGAAGGAATGGAGAGGGTTTGCC-TG  1098
      |||||| |||||  ||||    ||||||||||||||||  | ||||| ||
seq2  GGACTT-ATTACGAAGCT----AATGAAGGAATGGAGA--GCTTGCCTTG  1079

seq1  ATAGGAA  1105
      |||||||
seq2  ATAGGAA  1086