BAC Information

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BAC

Clone NameB6Ng01-094K13
Chromosome17 (Build37)
Map Location 49,377,451 - 49,531,855
singlet/doubletdoublet
Overlap genenone
Upstream geneTrem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
Downstream geneMocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094K13.bB6Ng01-094K13.g
ACCDH905820DH905821
length1,0671,095
definitionDH905820|Mus musculus domesticus DNA, BAC clone: B6Ng01-094K13, 5' end.DH905821|Mus musculus domesticus DNA, BAC clone: B6Ng01-094K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,530,778 - 49,531,855)(49,377,451 - 49,378,552)
sequence
gaattccttccttggtgacatcaccctcttaaggccccaaaggcaaagtc
gaattccattaaatttcactctggaaaccagcgagtttattggatttacc
taccaagcttggacgaggggtacataaaagagtgtaggtgaccccaaagc
agctacactggatagtcttcacccatcatggatcctgcagcttcctcata
gctattcagatggatgtcccttctcagttaaccacctacagcctatacac
tctagcacgttccccaaacaccagaagccacatgcaattagggcagaact
gcccacaaatggataggaatcacagctctggtatcagtggtcctcctcaa
tgcttccttctttaagggaatggcaacaatcaacaagtccactcctgaag
ttcccctgtatgatcttatcaaaatggtggctgctttgttccaagcgctg
cattctatgacccatctcttgaaggattctattcccttactacagtctgc
actgtttgttgatctgctctgtgctcacttgattcattatccagtataga
gctgcatcagaacttcttgaatgcagggaagatagatactagatgggcct
tgcacctacaaatgatcacacacacactcacacacacacacaatttgttc
agcctttccatcactctctttccagttttatttatctgtaactagtcatc
acaaagatcacagagttatgtgatttggaatatgattatttggaaaacaa
attcttttacattgaaaagcaacttcctgagaggctgttgtctagacgtg
ccaccattattcacaaaattaatggacacacctaaaaaaaaataccatag
taagaggaacgaaccaatgcatgaactcagacattgatcagattcagatc
ccatcttgcctgagttagatcggtaccacatccccgccccccaacataaa
tgctagttggatgttgtaactgagaaatctctttgttgatgggaatgtaa
atggtatagccatattggagataattcgaaatttcttaaaagggaaagga
ggaaatatggaaatgtg
gaattccaattggtgcaaatcacctggggactgccgtcagcagccaacat
ccccggctaaaatagcccactaggtaattcactggtttattacccagaaa
ctaaaacagagcaatgaggcccatggccaataggaaggcatttcaaaggg
aaaaaccctttcctcttgtggtagcgtgtgagtcctgagattcctcatcc
ttggtttgtagtcttcctcttttcttcagccatttttagccagcagaaaa
gactgcagagctgcccttggtgggttcagtgaccaaggaacctaccgacc
actgcactggtagagagcatgaacacatttatgtataccacgtgtgtatg
gtatacatgggaatggataagcatggtgacataatgtaggtctaagaatc
tgtgtatatgtgtgagtaagtgtgtgcaggtgtgtgggagtgtgtaaccc
cgaggttgacatgggagttttttgtcattgttgcttttgtttttattaca
cacacacacacacacacacacacacacacacacacacacacacacacaat
gtcgctgtcttcagacactccagaagagggcatcagatcccattactaat
ggttgtgagtcaccatgtggttgctgggaattgaacttaggacctctgga
agagcagtcagtgctcttaaccactgagccatctctccagccttttgaca
cagaaactttttttttatttttttcattttttactagatattttcttcat
ttacatttcaaatgctatcccaaaaatcccctataccctccccctcgccc
tgctcccctacccacccatttcctacttcttggccctggcgttcccctgt
actggagcttataagtttgcaagaccaagggaccttctcttccaatgatg
ccgactaggccatctctgctacatatgcagctagagacacgagctctagg
ggactgggtagttaatatgttggtccgttcaccaataggaatggcaaacc
cctccgctccttgggtcctttctcagtctcccctatggggggcctgggga
tcctcccaatagctactgtgaggatccacttctgtattggccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49530778_49531855
seq2: B6Ng01-094K13.b_54_1120 (reverse)

seq1  CACACTTCCATACTTCCCTCCTTTCCCTTTTAAGAAATTTTCGAATTATT  50
      |||| ||||||| || ||||||||||||||||||||| |||||||||| |
seq2  CACATTTCCATA-TTTCCTCCTTTCCCTTTTAAGAAA-TTTCGAATTA-T  47

seq1  CTCC-ATATGGCTATACCAATTTACATTCCCATCAACAAAGAGATTTTCT  99
      |||| ||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTCCAATATGGCTATACC-ATTTACATTCCCATCAACAAAGAGA-TTTCT  95

seq1  CAGTTTACACATCCAACTAGCATTTATTGTTGGGGGGGGCGGGGATTGTG  149
      |||||   |||||||||||||||||| ||||  |||||||||||| ||||
seq2  CAGTTACAACATCCAACTAGCATTTA-TGTT--GGGGGGCGGGGA-TGTG  141

seq1  GTACCGATTCTAACTCAGGCAAGATGGGATCTGAATTCTGATCAATGTCT  199
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GTACCGA-TCTAACTCAGGCAAGATGGGATCTGAA-TCTGATCAATGTCT  189

seq1  GAGTTCATGCATTGGTTCGTTCCTCTTACTATGGTATTTTTTTTTTAGGT  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGTTCATGCATTGGTTCGTTCCTCTTACTATGGTA-TTTTTTTTTAGGT  238

seq1  GTGTCCATTAATTTTGTGAATAATGGTGGCACGTCTAGACAACAGCCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATTAATTTTGTGAATAATGGTGGCACGTCTAGACAACAGCCTCT  288

seq1  CAGGAAGTTGCTTTTCAATGTAAAAGAATTTGTTTTCCAAATAATCATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTGCTTTTCAATGTAAAAGAATTTGTTTTCCAAATAATCATAT  338

seq1  TCCAAATCACATAACTCTGTGATCTTTGTGATGACTAGTTACAGATAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCACATAACTCTGTGATCTTTGTGATGACTAGTTACAGATAAAT  388

seq1  AAAACTGGAAAGAGAGTGATGGAAAGGCTGAACAAATTGTGTGTGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAAAGAGAGTGATGGAAAGGCTGAACAAATTGTGTGTGTGTGT  438

seq1  GAGTGTGTGTGTGATCATTTGTAGGTGCAAGGCCCATCTAGTATCTATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTGTGTGATCATTTGTAGGTGCAAGGCCCATCTAGTATCTATCT  488

seq1  TCCCTGCATTCAAGAAGTTCTGATGCAGCTCTATACTGGATAATGAATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCATTCAAGAAGTTCTGATGCAGCTCTATACTGGATAATGAATCA  538

seq1  AGTGAGCACAGAGCAGATCAACAAACAGTGCAGACTGTAGTAAGGGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACAGAGCAGATCAACAAACAGTGCAGACTGTAGTAAGGGAATA  588

seq1  GAATCCTTCAAGAGATGGGTCATAGAATGCAGCGCTTGGAACAAAGCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTCAAGAGATGGGTCATAGAATGCAGCGCTTGGAACAAAGCAGC  638

seq1  CACCATTTTGATAAGATCATACAGGGGAACTTCAGGAGTGGACTTGTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTGATAAGATCATACAGGGGAACTTCAGGAGTGGACTTGTTGA  688

seq1  TTGTTGCCATTCCCTTAAAGAAGGAAGCATTGAGGAGGACCACTGATACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCATTCCCTTAAAGAAGGAAGCATTGAGGAGGACCACTGATACC  738

seq1  AGAGCTGTGATTCCTATCCATTTGTGGGCAGTTCTGCCCTAATTGCATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTGATTCCTATCCATTTGTGGGCAGTTCTGCCCTAATTGCATGT  788

seq1  GGCTTCTGGTGTTTGGGGAACGTGCTAGAGTGTATAGGCTGTAGGTGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGGTGTTTGGGGAACGTGCTAGAGTGTATAGGCTGTAGGTGGTT  838

seq1  AACTGAGAAGGGACATCCATCTGAATAGCTATGAGGAAGCTGCAGGATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAAGGGACATCCATCTGAATAGCTATGAGGAAGCTGCAGGATCC  888

seq1  ATGATGGGTGAAGACTATCCAGTGTAGCTGCTTTGGGGTCACCTACACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGTGAAGACTATCCAGTGTAGCTGCTTTGGGGTCACCTACACTC  938

seq1  TTTTATGTACCCCTCGTCCAAGCTTGGTAGGTAAATCCAATAAACTCGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTACCCCTCGTCCAAGCTTGGTAGGTAAATCCAATAAACTCGCT  988

seq1  GGTTTCCAGAGTGAAATTTAATGGAATTCGACTTTGCCTTTGGGGCCTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCAGAGTGAAATTTAATGGAATTCGACTTTGCCTTTGGGGCCTTA  1038

seq1  AGAGGGTGATGTCACCAAGGAAGGAATTC  1078
      |||||||||||||||||||||||||||||
seq2  AGAGGGTGATGTCACCAAGGAAGGAATTC  1067

seq1: chr17_49377451_49378552
seq2: B6Ng01-094K13.g_67_1161

seq1  GAATTCCAATTGGTGCAAATCACCTGGGGACTGCCGTCAGCAGCCAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTGGTGCAAATCACCTGGGGACTGCCGTCAGCAGCCAACAT  50

seq1  CCCCGGCTAAAATAGCCCACTAGGTAATTCACTGGTTTATTACCCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCTAAAATAGCCCACTAGGTAATTCACTGGTTTATTACCCAGAAA  100

seq1  CTAAAACAGAGCAATGAGGCCCATGGCCAATAGGAAGGCATTTCAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGAGCAATGAGGCCCATGGCCAATAGGAAGGCATTTCAAAGGG  150

seq1  AAAAACCCTTTCCTCTTGTGGTAGCGTGTGAGTCCTGAGATTCCTCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTTTCCTCTTGTGGTAGCGTGTGAGTCCTGAGATTCCTCATCC  200

seq1  TTGGTTTGTAGTCTTCCTCTTTTCTTCAGCCATTTTTAGCCAGCAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTAGTCTTCCTCTTTTCTTCAGCCATTTTTAGCCAGCAGAAAA  250

seq1  GACTGCAGAGCTGCCCTTGGTGGGTTCAGTGACCAAGGAACCTACCGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGAGCTGCCCTTGGTGGGTTCAGTGACCAAGGAACCTACCGACC  300

seq1  ACTGCACTGGTAGAGAGCATGAACACATTTATGTATACCACGTGTGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTGGTAGAGAGCATGAACACATTTATGTATACCACGTGTGTATG  350

seq1  GTATACATGGGAATGGATAAGCATGGTGACATAATGTAGGTCTAAGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATGGGAATGGATAAGCATGGTGACATAATGTAGGTCTAAGAATC  400

seq1  TGTGTATATGTGTGAGTAAGTGTGTGCAGGTGTGTGGGAGTGTGTAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATGTGTGAGTAAGTGTGTGCAGGTGTGTGGGAGTGTGTAACCC  450

seq1  CGAGGTTGACATGGGAGTTTTTTGTCATTGTTGCTTTTGTTTTTATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTTGACATGGGAGTTTTTTGTCATTGTTGCTTTTGTTTTTATTACA  500

seq1  CACACACACACACACACACACACACACACACACACACACACACACACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACAAT  550

seq1  GTCGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCCCATTACTAAT  600

seq1  GGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACTTAGGACCTCTGGA  650

seq1  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTTTTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCTTTTGACA  700

seq1  CAGAACTTTTTATTTTATTTTTTTCAATTTTTTACTAGATATTTTCTTCA  750
      |||||  |||| ||||||||||||| ||||||||||||||||||||||||
seq2  CAGAAACTTTTTTTTTATTTTTTTC-ATTTTTTACTAGATATTTTCTTCA  749

seq1  TTTACATTTCAAATGCTATCCCAAAAATCCCCTATACCCTCCCCCTCGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCAAATGCTATCCCAAAAATCCCCTATACCCTCCCCCTCGCC  799

seq1  CTGCTCCCCTACCCACCCA-TTCCCACTTCTTGGCCCTGGCGTTCCCCTG  849
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  CTGCTCCCCTACCCACCCATTTCCTACTTCTTGGCCCTGGCGTTCCCCTG  849

seq1  TACTGGAGCATATAAAGTTTGCAAGACCAAGGGACC-TCTCTTCCCAATG  898
      ||||||||| ||| |||||||||||||||||||||| |||||| ||||||
seq2  TACTGGAGCTTAT-AAGTTTGCAAGACCAAGGGACCTTCTCTT-CCAATG  897

seq1  ATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACATGAGCT  948
      || ||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  AT-GCCGACTAGGCCATC-TCTGCTACATATGCAGCTAGAGACACGAGCT  945

seq1  CTAGGGGTACTGGTTAGTTCATATTGTTGTTCCGTTCCACCTATAGG-AT  997
      ||||||| ||||| ||||| ||| ||||| |||||| |||| ||||| ||
seq2  CTAGGGG-ACTGGGTAGTTAATA-TGTTGGTCCGTT-CACCAATAGGAAT  992

seq1  TGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCACCTATGGGG  1047
       ||| ||||| || ||||||||||| |||||||   |||| |||||||||
seq2  GGCAAACCCC-TCCGCTCCTTGGGTCCTTTCTCAGTCTCC-CCTATGGGG  1040

seq1  GCCCT-GTGATCCATCCAATAGCTAACTGTGAGCATCCACTTCTGTATTT  1096
      | ||| | |||||  ||||||||| |||||||| ||||||||||||||| 
seq2  GGCCTGGGGATCCTCCCAATAGCT-ACTGTGAGGATCCACTTCTGTATTG  1089

seq1  GCCAGG  1102
      ||||||
seq2  GCCAGG  1095