BAC Information

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BAC

Clone NameB6Ng01-095I07
Chromosome17 (Build37)
Map Location 23,740,974 - 23,741,917
singlet/doubletsinglet
Overlap geneZscan10
Upstream geneEG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13
Downstream geneLOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095I07.bB6Ng01-095I07.g
ACCDH906441DH906442
length1,155940
definitionDH906441|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I07, 5' end.DH906442|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaggaggaagcttacttgatcatggtgcatgacggttttgatg
tgttcttggatgcagtttgcatgatttttattgagtattttttcagtgat
atttgtaagtgaaactggtctgaagttgtctttctttgttggatctatgt
gtggtttatttatcagagtaattgtagcttcatagaatgtgctaggtagt
gttccttctgtttctattgtatggaatattttgatgtgatgagtattggg
acaagtattggtattagctcttgtttgaaaatctggtagaactgtggact
aaacatgtctggacttgggctttttttttttctttcattgggaggtttat
agtgacttctttgacttccttaggagatttgggtcttgttacatatttta
cctgctcttcatttaacttctgcgtgtggcatctgtctaggaaatcactc
atttcatgtagattttcaaggtttgtttgttgattatgtagtaatctttt
gtagtaggatctgaatgatttttgagttttctcagtttctgtttttctgt
ctcccttttcatttctaatttgttaatgtggaaactgtctcagtgacctt
tacttaatttgtgtaggctttatctatcttgttgattttctcaatgaagc
agcttctggttttgttgattccttgtatcattctattttgtctatttggt
tgagttctgccctgagtctgactatttctgccttctctttctcttgagtg
tgcttgctttgttttagaggtgtgctggtaatttgctagtagcggatctc
ttccatttctttatcagggcacttactgctatgaattttcctcttagctg
tgcttttattgtgtcccataagtttgggtatgtgtgtcatcaatatcatt
cattccaaatagtctttaatttgtttctttttctttcacgaccaagttaa
tcattgagtagagcattcttcagtcccatggatttgtgggttttctcttg
ttgttgtcattgaaatctatctagttttgtccatgttgatctggaggatt
cataggattttcaatcttcttgtttaagtgaggcttctgttactgattat
tgcacattttgagagagtattgccgaagttctgagaatgcgatatcctct
ggtgt
gaattccagccagggatacacagagaaaccctctcttgaaaaaccagaaa
aaaaaaaaattaatgtggctttctgaggagtcctttccttttatcaaggg
tgatcactcacagcagaaggtgaaaacagagtaatcatgcaagggcaaaa
aaatcagggagggctgaaggggctgtgattcagtaggtgagagctcgccc
agcatgctagcaccgcataaactgggcatagtgaggcaggcctacagaca
gaaacaggaggcaagaagaccaggagtcccaggtcaccctcagcagctat
ataacaagtcttaggctagtctggggtggggtggaattggcaaaggtggg
gatgtagataggtggcgatcgagagcgcttgccatgaaagccgtggctca
gagctcggatctcagtatccacagaacaagcaagaaatgttcccatacat
ttctgacctaccaatgttggaggcagagacaggaggattggtgggaaaga
ccaaggcccaggaagatatctaacccaaaggacagttagttagagctagc
cagcagttagagtggggcatcccagtgctgtctttcttttgcattcctat
aggtgtgcacatatggggccatatgcaccacacacattctcacaaacaga
aactggacctttctggatgattgtcctattgtacacccatagagatgtgg
tgtgaccttttacctgccctattaatgcattccactaggggctctgtgga
agagagactaaggagaaaatcattcatctcttggagctggagagacattc
tctgtggtaagaacacttgcttgcctctctgcaaaggacatgggtcctgt
ctcagcacccacttgggggcttacatgtatctgtactccattttcaggga
tccatgtctcttctttgacctccagggatccagtgtaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23740974_23741917
seq2: B6Ng01-095I07.g_67_1006 (reverse)

seq1  GCTTACCTGGGATCCCTGGAGGTCAGAAGAAGAGAACATTGGATCCCCTG  50
      ||||||   |||||||||||||||| |||||||| ||| ||||| |||||
seq2  GCTTACACTGGATCCCTGGAGGTCA-AAGAAGAG-ACA-TGGAT-CCCTG  46

seq1  GAAATGGAGTTACAGATACATGTAAGCCCCCAAGTGGGTGCTGAGACAGG  100
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAG-TACAGATACATGTAAGCCCCCAAGTGGGTGCTGAGACAGG  95

seq1  ACCCATGTCCTTTGCAAGAGAGGC-AGCAAGTGTTCTTAACCACAGAG-A  148
      ||||||||||||||| |||||||| ||||||||||||| ||||||||| |
seq2  ACCCATGTCCTTTGC-AGAGAGGCAAGCAAGTGTTCTT-ACCACAGAGAA  143

seq1  TGTCTCTCCAGCTCCAAGAGATGAAATGATTTTCTCCTTAGTCTCTCTTC  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCTCTCCAGCTCCAAGAGATG-AATGATTTTCTCCTTAGTCTCTCTTC  192

seq1  CACAGAGCCCCTAGTGG-ATGCATTAATAGGGCAGGTAAAAGGTCACACC  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACAGAGCCCCTAGTGGAATGCATTAATAGGGCAGGTAAAAGGTCACACC  242

seq1  ACATCTCTATGGGTGTACAATAGGACAATCATCCAGAAAGGTCCAGTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTATGGGTGTACAATAGGACAATCATCCAGAAAGGTCCAGTTTC  292

seq1  TGTTTGTGAGAATGTGTGTGGTGCATATGGCCCCATATGTGCACACCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGAGAATGTGTGTGGTGCATATGGCCCCATATGTGCACACCTAT  342

seq1  AGGAATGC-AAAGAAAGACAGCACTGGGATGCCCCACTCTAACTGCTGGC  396
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCAAAAGAAAGACAGCACTGGGATGCCCCACTCTAACTGCTGGC  392

seq1  TAGCTCTAACTAACTGTCCTTTGGGTTAGATATCTTCCTGGGCCTTGGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAACTAACTGTCCTTTGGGTTAGATATCTTCCTGGGCCTTGGTC  442

seq1  TTTCCCACCAATCCTCCTGTCTCTGCCTCCAACATTGGTAGGTCAGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACCAATCCTCCTGTCTCTGCCTCCAACATTGGTAGGTCAGAAAT  492

seq1  GTATGGGAACATTTCTTGCTTGTTCTGTGGATACTGAGATCCGAGCTCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGAACATTTCTTGCTTGTTCTGTGGATACTGAGATCCGAGCTCTG  542

seq1  AGCCACGGCTTTCATGGCAAGCGCTCTCGATCGCCACCTATCTACATCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGGCTTTCATGGCAAGCGCTCTCGATCGCCACCTATCTACATCCC  592

seq1  CACCTTTGCCAATTCCACCCCACCCCAGACTAGCCTAAGACTTGTTATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGCCAATTCCACCCCACCCCAGACTAGCCTAAGACTTGTTATAT  642

seq1  AGCTGCTGAGGGTGACCTGGGACTCCTGGTCTTCTTGCCTCCTGTTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGAGGGTGACCTGGGACTCCTGGTCTTCTTGCCTCCTGTTTCTG  692

seq1  TCTGTAGGCCTGCCTCACTATGCCCAGTTTATGCGGTGCTAGCATGCTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGCCTGCCTCACTATGCCCAGTTTATGCGGTGCTAGCATGCTGG  742

seq1  GCGAGCTCTCACCTACTGAATCACAGCCCCTTCAGCCCTCCCTGATTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTCTCACCTACTGAATCACAGCCCCTTCAGCCCTCCCTGATTTTT  792

seq1  TTGCCCTTGCATGATTACTCTGTTTTCACCTTCTGCTGTGAGTGATCACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTTGCATGATTACTCTGTTTTCACCTTCTGCTGTGAGTGATCACC  842

seq1  CTTGATAAAAGGAAAGGACTCCTCAGAAAGCCACATTAATTTTTTTTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAAAGGAAAGGACTCCTCAGAAAGCCACATTAATTTTTTTTTTT  892

seq1  TCTGGTTTTTCAAGAGAGGGTTTCTCTGTGTATCCCTGGCTGGAATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTTCAAGAGAGGGTTTCTCTGTGTATCCCTGGCTGGAATTC  940