BAC Information

Click to search

BAC

Clone NameB6Ng01-097I15
Chromosome17 (Build37)
Map Location 20,207,350 - 20,422,143
singlet/doubletdoublet
Overlap geneEG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856
Downstream geneV2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097I15.bB6Ng01-097I15.g
ACCDH907891DH907892
length1,0831,069
definitionDH907891|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I15, 5' end.DH907892|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,207,350 - 20,208,434)(20,421,068 - 20,422,143)
sequence
gaattccataagaatttgcctagagagaatgaaagggggaataatacaat
catgttttcattttcaaaatacatttataatatataatgtgctttaaaat
gtaggcatgcaaaaaagagtgataaagtctgttttattgaagttgcctgt
gttcactgttttgtgactgtagattttgagttcctttgctaaattagtat
tgattgttatttaattccacatatgtacaaaattcgcaaaagtcatatgt
atctttaaatttttatatgtatttatttgagtatttaatatttatacatg
aaaaatgtaattgattttatttttaaaattaaacatcctaattatcattt
ttcccctttggtctatatttttcatttacattttatctgcctgctttcca
ttaaacaaataattgttgatatttatcattttagtttgtgatataaaata
actttattaatcattcaaataaaatgaagttaatttcaaaacacatgcat
gcattaataaaaagaattacataaaatagcattacaattaatttcataga
tatactcaagtaggtagtataagtaattttcctatacccagcatgccagg
ttgttgatcttgctttttctgtttctatacctctattacttgccattata
ttgtaattattgtgactacattttctctttgcttttgtgtctgtttgtgt
ctttgttcatgtgggaatatctgactctttcatttttgtatctattgagt
ccattacttgtgttgtatattcaagatttagatgtttgtgagcagcctaa
tattatttcttggaaacaaacatggattctctagaaaaatgacatcatta
gttgttgagcaagacctcctcctcaccataattttttcttgaaaatctta
aaaatgattatatatttacacatattaggaattcagtgcatacatcatac
tctacaaagcccccaattagtccaataccaccctctttgcccatatctct
tcattccaattttaagttttgtcaggagctatcctatggacaagctaata
actagcagttggtctcctggaaatgacttgcat
gaattcttatgatttattgggagtactctttaaattgtactaacattatt
tttcatttttaaatgactatttttttttagatatttgaaaatctattctt
taaatgtattatcattttggcttcttttcctctctcaggtggaataaaat
ggtaactttgagtttcttcatcttagttccctcctttgattaataaagtg
taactttttatttgcagttactgttatgcacaataactgaatagttttca
atattatgattttaagaagtgttaatttgtacttagttgacatttttatt
catattcctaaagggttcttgtggtattagattatattactgaatgtgtg
ttgtgatgcttgagtgatgaggctgtgttttaatatttacagctgattcc
agatttattgcatcagaatagtgaatacttctgggctccagagatatttt
atccatctcatttttcttataagtaattgtttgctgatttaatttttatt
ttttgagctttccagtgtttacctatttacactatctgtttgcagtattt
actctcatttttatggttgtatttaccaagacaccatgcctatgagtgtg
tcatcttctatttcctagcatgtgtgaaatattccacatgaattcataga
gtcaggtaggattttctgaattacagaaaaatattcatgtgtttccgaat
aagggaaataagatgtgtttttataaatcagactttccaatcccatgaat
atcatctttttttcctttttaaatatttttattaggtattttcctcattt
acatttccaatgctatcccaaaagtcccccatatcttccccgccctcccc
tacccacccactcccactttttgaccctggtgttcccctatattggggca
tataaagagtgcatgaccaatgggcctctctttcagtgatggccgactag
gccgtcttttgatacactggcagctagagacaagagcttcggggactggt
agttcaaaaggtttcacactaaagggttgcagttccttaacctcctgggg
tactattctagctcctcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20207350_20208434
seq2: B6Ng01-097I15.b_43_1125

seq1  GAATTCCATAAGAATTTGCCTAGAGAGAATGAAAGGGGGAATAATACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGAATTTGCCTAGAGAGAATGAAAGGGGGAATAATACAAT  50

seq1  CATGTTTTCATTTTCAAAATACATTTATAATATATAATGTGCTTTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCATTTTCAAAATACATTTATAATATATAATGTGCTTTAAAAT  100

seq1  GTAGGCATGCAAAAAAGAGTGATAAAGTCTGTTTTATTGAAGTTGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCATGCAAAAAAGAGTGATAAAGTCTGTTTTATTGAAGTTGCCTGT  150

seq1  GTTCACTGTTTTGTGACTGTAGATTTTGAGTTCCTTTGCTAAATTAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGTTTTGTGACTGTAGATTTTGAGTTCCTTTGCTAAATTAGTAT  200

seq1  TGATTGTTATTTAATTCCACATATGTACAAAATTCGCAAAAGTCATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTATTTAATTCCACATATGTACAAAATTCGCAAAAGTCATATGT  250

seq1  ATCTTTAAATTTTTATATGTATTTATTTGAGTATTTAATATTTATACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAATTTTTATATGTATTTATTTGAGTATTTAATATTTATACATG  300

seq1  AAAAATGTAATTGATTTTATTTTTAAAATTAAACATCCTAATTATCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAATTGATTTTATTTTTAAAATTAAACATCCTAATTATCATTT  350

seq1  TTCCCCTTTGGTCTATATTTTTCATTTACATTTTATCTGCCTGCTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTGGTCTATATTTTTCATTTACATTTTATCTGCCTGCTTTCCA  400

seq1  TTAAACAAATAATTGTTGATATTTATCATTTTAGTTTGTGATATAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAATAATTGTTGATATTTATCATTTTAGTTTGTGATATAAAATA  450

seq1  ACTTTATTAATCATTCAAATAAAATGAAGTTAATTTCAAAACACATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTAATCATTCAAATAAAATGAAGTTAATTTCAAAACACATGCAT  500

seq1  GCATTAATAAAAAGAATTACATAAAATAGCATTACAATTAATTTCATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATAAAAAGAATTACATAAAATAGCATTACAATTAATTTCATAGA  550

seq1  TATACTCAAGTAGGTAGTATAAGTAATTTTCCTATACCCAGCATGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAAGTAGGTAGTATAAGTAATTTTCCTATACCCAGCATGCCAGG  600

seq1  TTGTTGATCTTGCTTTTTCTGTTTCTATACCTCTATTACTTGCCATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATCTTGCTTTTTCTGTTTCTATACCTCTATTACTTGCCATTATA  650

seq1  TTGTAATTATTGTGACTACATTTTCTCTTTGCTTTTGTGTCTGTTTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTATTGTGACTACATTTTCTCTTTGCTTTTGTGTCTGTTTGTGT  700

seq1  CTTTGTTCATGTGGGAATATCTGACTCTTTCATTTTTGTATCTATTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCATGTGGGAATATCTGACTCTTTCATTTTTGTATCTATTGAGT  750

seq1  CCATTACTTGTGTTGTATATTCAAGATTTAGATGTTTGTGAGCAGCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTTGTGTTGTATATTCAAGATTTAGATGTTTGTGAGCAGCCTAA  800

seq1  TATTATTTCTTGGAAACAAACATGGATTCTCTAGAAAAATGACATCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCTTGGAAACAAACATGGATTCTCTAGAAAAATGACATCATTA  850

seq1  GTTGTTGAGCAAGACCTCCTCCTCACCATAATTTTTTTCTTGAAAATCTT  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTGTTGAGCAAGACCTCCTCCTCACCATAA-TTTTTTCTTGAAAATCTT  899

seq1  AAAAATGATTATATATTTACACATATTAGGAATTCAGTGCATACATCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATTATATATTTACACATATTAGGAATTCAGTGCATACATCATA  949

seq1  CTCTACAAAGCCCCCAATTAGTCCAATACCCACCCTCTTTGCCCATATCT  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCTACAAAGCCCCCAATTAGTCCAATA-CCACCCTCTTTGCCCATATCT  998

seq1  C-TCATTCCCAATTTTAAGTTTTGTCAGGAGCTATCATA-GGACAAGCTA  1048
      | ||||| |||||||||||||||||||||||||||| || ||||||||||
seq2  CTTCATT-CCAATTTTAAGTTTTGTCAGGAGCTATCCTATGGACAAGCTA  1047

seq1  ATAACTAGCAGTTGGTCTCCCTGAAATGACTTTGCAT  1085
      ||||||||||||||||||||  |||||||| ||||||
seq2  ATAACTAGCAGTTGGTCTCCTGGAAATGAC-TTGCAT  1083

seq1: chr17_20421068_20422143
seq2: B6Ng01-097I15.g_67_1135 (reverse)

seq1  TGGAGGAGCTAGAATAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTC  50
      ||||||||||||||| ||||||| ||||| | || |||||||||||||| 
seq2  TGGAGGAGCTAGAAT-AGTACCCCAGGAGGTTAA-GGAACTGCAACCCTT  48

seq1  TAG-GTGGAAAAACATTATGAACTAACCAGTACCCCGGAGCTCTTGTCTC  99
      ||| |||   |||| || |||||| |||||| ||||| ||||||||||||
seq2  TAGTGTG---AAACCTTTTGAACT-ACCAGT-CCCCGAAGCTCTTGTCTC  93

seq1  TAGCTGCATGTGTATCAAAAGACGGCCTAGTCGGCCATCACTGGAAAGAG  149
      |||||||  ||||||||||||||||||||||||||||||||| |||||||
seq2  TAGCTGCCAGTGTATCAAAAGACGGCCTAGTCGGCCATCACT-GAAAGAG  142

seq1  AGGCCCATTGGTCATGCACTCTTTATATGCCCCAATATAGGGGAACACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATTGGTCATGCACTCTTTATATGCCCCAATATAGGGGAACACCA  192

seq1  GGGTCAAAAAGTGGGAGTGGGTGGGTAGGGGAGGGCGGGGAAGATATGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAAAAGTGGGAGTGGGTGGGTAGGGGAGGGCGGGGAAGATATGGG  242

seq1  GGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAA  292

seq1  AATATTTAAAAAGGAAAAAAAGATGATATTCATGGGATTGGAAAGTCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAAAGGAAAAAAAGATGATATTCATGGGATTGGAAAGTCTGA  342

seq1  TTTATAAAAACACATCTTATTTCCCTTATTCGGAAACACATGAATATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAACACATCTTATTTCCCTTATTCGGAAACACATGAATATTTT  392

seq1  TCTGTAATTCAGAAAATCCTACCTGACTCTATGAATTCATGTGGAATATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTCAGAAAATCCTACCTGACTCTATGAATTCATGTGGAATATT  442

seq1  TCACACATGCTAGGAAATAGAAGATGACACACTCATAGGCATGGTGTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATGCTAGGAAATAGAAGATGACACACTCATAGGCATGGTGTCTT  492

seq1  GGTAAATACAACCATAAAAATGAGAGTAAATACTGCAAACAGATAGTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATACAACCATAAAAATGAGAGTAAATACTGCAAACAGATAGTGTA  542

seq1  AATAGGTAAACACTGGAAAGCTCAAAAAATAAAAATTAAATCAGCAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTAAACACTGGAAAGCTCAAAAAATAAAAATTAAATCAGCAAACA  592

seq1  ATTACTTATAAGAAAAATGAGATGGATAAAATATCTCTGGAGCCCAGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATAAGAAAAATGAGATGGATAAAATATCTCTGGAGCCCAGAAG  642

seq1  TATTCACTATTCTGATGCAATAAATCTGGAATCAGCTGTAAATATTAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTATTCTGATGCAATAAATCTGGAATCAGCTGTAAATATTAAAA  692

seq1  CACAGCCTCATCACTCAAGCATCACAACACACATTCAGTAATATAATCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTCATCACTCAAGCATCACAACACACATTCAGTAATATAATCTA  742

seq1  ATACCACAAGAACCCTTTAGGAATATGAATAAAAATGTCAACTAAGTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACAAGAACCCTTTAGGAATATGAATAAAAATGTCAACTAAGTACA  792

seq1  AATTAACACTTCTTAAAATCATAATATTGAAAACTATTCAGTTATTGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACACTTCTTAAAATCATAATATTGAAAACTATTCAGTTATTGTGC  842

seq1  ATAACAGTAACTGCAAATAAAAAGTTACACTTTATTAATCAAAGGAGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTAACTGCAAATAAAAAGTTACACTTTATTAATCAAAGGAGGGA  892

seq1  ACTAAGATGAAGAAACTCAAAGTTACCATTTTATTCCACCTGAGAGAGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATGAAGAAACTCAAAGTTACCATTTTATTCCACCTGAGAGAGGA  942

seq1  AAAGAAGCCAAAATGATAATACATTTAAAGAATAGATTTTCAAATATCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCAAAATGATAATACATTTAAAGAATAGATTTTCAAATATCTA  992

seq1  AAAAAAAATAGTCATTTAAAAATGAAAAATAATGTTAGTACAATTTAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAGTCATTTAAAAATGAAAAATAATGTTAGTACAATTTAAAG  1042

seq1  AGTACTCCCAATAAATCATAAGAATTC  1076
      |||||||||||||||||||||||||||
seq2  AGTACTCCCAATAAATCATAAGAATTC  1069