BAC Information

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BAC

Clone NameB6Ng01-099C12
Chromosome17 (Build37)
Map Location 43,829,315 - 43,963,168
singlet/doubletdoublet
Overlap geneCyp39a1, Dscr1l1
Upstream geneGpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27
Downstream geneEnpp5, Enpp4, Clic5, Runx2, Supt3h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C12.bB6Ng01-099C12.g
ACCDH909029DH909030
length279771
definitionDH909029|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C12, 5' end.DH909030|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,829,315 - 43,829,594)(43,962,401 - 43,963,168)
sequence
ttcaccctggcatccaactagccaaggaaaacttgccctttgtggtcctc
tgtgtgctgtgtaagaacccctgactctgttaggctatatgctctgtgct
gtgcagttggacaaagcctagcaccagctttgaaccaaagtgataataca
ccaactgatggtttcctatggaattgcttatctccagccactgtggtgtc
tatggaaaaaaaaatctctgtgtcttcatttcctttacaggaaatgggga
gagaagggggaagagagggagagaatgtg
gaattctgagacacaaaggggagacgcaatgttcctaagcatcgctctct
agaaacccattagaactccttctgaaatataatggaatctgtttaattca
gttgcagaattttcacacctgcagagccttgtgaacctcatgctattctt
gataccagctgggatcagtcctgaaaaagtcaggcgcctgagttttagct
catagttttcaaaggcatttatcatctatgtctcctgtccggatgcctgc
tggggccgccgttcttccttacagctcaaactggaacataatttaatcaa
ttctccaatagcacagcatcttaggaatatttatgaaacacataaaccaa
gcaagttgtctctatttgtgggcctgcaaaaggcagtctgtgttctggtc
aaacgactccagagacccagtagaaaactatacaagggaaaaaatagtga
gccacattcccagacacaggtgcctgacaccaccagtcctcaactccata
atcctgtgattatcagtcacgcagacaatgtcccaagctcctggtattct
ggctagactccaccccacagttaacctggcaatagccaggtatgctcctc
cccacagttacactgcaacagcaaggcagttcagcccactataaaaaggg
gctgcttgacacctctttctctctcaagctcttacctaccttactctcat
ctctccctctccttctccccctccctccacatggccatgggccagcctct
cctctcctctcctctcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43829315_43829594
seq2: B6Ng01-099C12.b_50_328

seq1  TTCACCCTGGCATCCAACTAGCCCAAGGAAAACTTGCCCTTTGTGGTCCT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCACCCTGGCATCCAACTAG-CCAAGGAAAACTTGCCCTTTGTGGTCCT  49

seq1  CTGTGTGCTGTGTAAGAACCCCTGACTCTGTTAGGCTATATGCTCTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCTGTGTAAGAACCCCTGACTCTGTTAGGCTATATGCTCTGTGC  99

seq1  TGTGCAGTTGGACAAAGCCTAGCACCAGCTTTGAACCAAAGTGATAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTTGGACAAAGCCTAGCACCAGCTTTGAACCAAAGTGATAATAC  149

seq1  ACCAACTGATGGTTTCCTATGGAATTGCTTATCTCCAGCCACTGTGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGATGGTTTCCTATGGAATTGCTTATCTCCAGCCACTGTGGTGT  199

seq1  CTATGGAAAAAAAAATCTCTGTGTCTTCATTTCCTTTACAGGAAATGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAAAAAAAAATCTCTGTGTCTTCATTTCCTTTACAGGAAATGGGG  249

seq1  AGAGAAGGGGGAAGAGAGGGAGAGAATGTG  280
      ||||||||||||||||||||||||||||||
seq2  AGAGAAGGGGGAAGAGAGGGAGAGAATGTG  279

seq1: chr17_43962401_43963168
seq2: B6Ng01-099C12.g_67_837 (reverse)

seq1  GAGAGGAGAGGAGAGGAGAGGAGAGGCTGG-CCATGGCCATGTGGAGGGA  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGAGGAGAGGAGAGGAGAGGAGAGGCTGGCCCATGGCCATGTGGAGGGA  50

seq1  GGGGGAGAAGGAGAGGGAGAGATGAGAGTAAGGTAGGTAAGAGCTTGAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAAGGAGAGGGAGAGATGAGAGTAAGGTAGGTAAGAGCTTGAGA  100

seq1  GAG-AAGAGGTGTCAAGCAGCCCC-TTTTATAGTGGGCTGAACTGCCTTG  147
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGAAAGAGGTGTCAAGCAGCCCCTTTTTATAGTGGGCTGAACTGCCTTG  150

seq1  CTGTTGCAGTGTAACTGTGGGGAGGAGCATACCTGGCTATTGCCAGGTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGTGTAACTGTGGGGAGGAGCATACCTGGCTATTGCCAGGTTA  200

seq1  ACTGTGGGGTGGAGTCTAGCCAGAATACCAGGAGCTTGGGACATTGTCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGGTGGAGTCTAGCCAGAATACCAGGAGCTTGGGACATTGTCTG  250

seq1  CGTGACTGATAATCACAGGATTATGGAGTTGAGGACTGGTGGTGTCAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTGATAATCACAGGATTATGGAGTTGAGGACTGGTGGTGTCAGGC  300

seq1  ACCTGTGTCTGGGAATGTGGCTCACTATTTTTTCCCTTGTATAGTTTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCTGGGAATGTGGCTCACTATTTTTTCCCTTGTATAGTTTTCT  350

seq1  ACTGGGTCTCTGGAGTCGTTTGACCAGAACACAGACTGCCTTTTGCAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCTCTGGAGTCGTTTGACCAGAACACAGACTGCCTTTTGCAGGC  400

seq1  CCACAAATAGAGACAACTTGCTTGGTTTATGTGTTTCATAAATATTCCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATAGAGACAACTTGCTTGGTTTATGTGTTTCATAAATATTCCTA  450

seq1  AGATGCTGTGCTATTGGAGAATTGATTAAATTATGTTCCAGTTTGAGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTGCTATTGGAGAATTGATTAAATTATGTTCCAGTTTGAGCTG  500

seq1  TAAGGAAGAACGGCGGCCCCAGCAGGCATCCGGACAGGAGACATAGATGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGAACGGCGGCCCCAGCAGGCATCCGGACAGGAGACATAGATGA  550

seq1  TAAATGCCTTTGAAAACTATGAGCTAAAACTCAGGCGCCTGACTTTTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCCTTTGAAAACTATGAGCTAAAACTCAGGCGCCTGACTTTTTCA  600

seq1  GGACTGATCCCAGCTGGTATCAAGAATAGCATGAGGTTCACAAGGCTCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGATCCCAGCTGGTATCAAGAATAGCATGAGGTTCACAAGGCTCTG  650

seq1  CAGGTGTGAAAATTCTGCAACTGAATTAAACAGATTCCATTATATTTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGAAAATTCTGCAACTGAATTAAACAGATTCCATTATATTTCAG  700

seq1  AAGGAGTTCTAATGGGTTTCTAGAGAGCGATGCTTAGGAACATTGCGTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTCTAATGGGTTTCTAGAGAGCGATGCTTAGGAACATTGCGTCT  750

seq1  CCCCTTTGTGTCTCAGAATTC  768
      |||||||||||||||||||||
seq2  CCCCTTTGTGTCTCAGAATTC  771