BAC Information

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BAC

Clone NameB6Ng01-099H01
Chromosome17 (Build37)
Map Location 24,599,954 - 24,779,544
singlet/doubletdoublet
Overlap gene1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2
Upstream geneEG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1
Downstream geneNpw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H01.bB6Ng01-099H01.g
ACCDH909232DH909233
length995734
definitionDH909232|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H01, 5' end.DH909233|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,778,556 - 24,779,544)(24,599,954 - 24,600,683)
sequence
gaattcttccacaggtctgccaggagctagctccttaggtgtttccgtgt
ttgataacatgctttgtccctagccccacagctaaagctgtgtaataggt
ggctccctcactaaacccctcagtcacagggcacatagtgtcattgatga
aacctgggattggttccttagagcataagggcagagaggctgcgggtaga
gcctgatgtcacctcttatgggtctacaggatgtcaatgggcccccaaga
gagctgcgtccccggctctgccacttgcgaaggggaccccagggctacgg
gttcaacctgcatagtgacaagtcccggcctggccagtacatccgctctg
tggaccctggctctcctgcttctcactctggcctccgtgcccaggatcgg
ctcattgaggtaccctgggtccccgtgtatctgtatgtccctgaatgtcc
atgtatgggccctgggtccctgcaggaggagggaagacacagggaacttg
agctggcactcttcttgcttctttggctgctggtggcttcgatgaatatt
tgatggcacacctggctgggtggcactgggccgactgggccccttaggcc
tttctgaccctgtgtgggtggcggcaggtgaatgggcagaacgtggaggg
gctgcgacatgccgaggttgtcgccagaatcaaggcacaggaggacgagg
cccggctgctggtagtcgatcctgagactgatgaacacttcaagcggttg
agggtcatacccactgaggaacatgtagaaggtaggttgttgcccttcgg
ggcagagggtagggtcagtgcagccactaacttaactgtccccacaggtc
cactgccatcaccagtcacgaacgggaccagtcctgcccaggtgagaggg
tggctcagtgaccatccgtatactctactactactactaccactactact
actactactctctcttctctctcttctctctcttcatcttcttct
gaattcactctgtagaccagatatgcctctccctcccaaatgctaggatt
aaaggtttgtgtggtgtgtgtgtgtgtgtgtgtgtgtttagcccaaggct
tgaacttgagagctttcagggaagagataagccaagaatcctggactact
tctctcaaaagatatactgaggaggagttgaaaagccagcatccagagaa
tgcaggagtgacgaaatgtcaagagagaggatgagttgggcatgaggggc
ccacctagaattctagcattggggaggctgaggccaaaggatcaccatga
atttgaagctacaaaatagtgagtttaccaggctgggttacataagaagc
cccaatctcacaaaagaagcaactgggaatagggggtggggaaggaccct
gaaataaaaaacaaaggacgatgttccagtaaatctccaacccaaaaagg
cccagttaaagaaatcacaactcagttaactggaatacaagctacacgcc
tagattgggcagatatgccactacactactctcttcctatctatgagatc
tagaagctgtggtttctccaggccatgtgcttctgctccattctcctccc
acctcctctgtggaggtctctcctccctttctcccacaaacgttcagctc
caccttccctcctaccgcccaatcactggcttctagcctttatttgagaa
gttaaagtgggggagaaggttcacaagggcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24778556_24779544
seq2: B6Ng01-099H01.b_46_1040 (reverse)

seq1  AGAAGAAGAAGAAGA---AGAAGA---AGAAGA---AGTAGTAGTAGTAG  41
      ||||||||| |||||   ||||||   ||||||   ||||||||||||||
seq2  AGAAGAAGATGAAGAGAGAGAAGAGAGAGAAGAGAGAGTAGTAGTAGTAG  50

seq1  TAGTGGTAGTAGTAGTAGTAGAGGTATACGGATGGTCACTTGAGCCCACC  91
      |||||||||||||||||||||| |||||||||||||||| |||| |||||
seq2  TAGTGGTAGTAGTAGTAGTAGA-GTATACGGATGGTCAC-TGAG-CCACC  97

seq1  CTCTCACCTGGGCAGGACTGGTCCCGTTCGTGACTGGTGATGGCAGTGGA  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTGGGCAGGACTGGTCCCGTTCGTGACTGGTGATGGCAGTGGA  147

seq1  CCTGTGGGGACAGTTAAGTTAGTGGCTGCACTGACCCTACCCTCTGCCCC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGGACAGTTAAGTTAGTGGCTGCACTGACCCTACCCTCTGCCCC  197

seq1  GAAGGGCAACAACCTACCTTCTACATGTTCCTCAGTGGGTATGACCCTCA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCAACAACCTACCTTCTACATGTTCCTCAGTGGGTATGACCCTCA  247

seq1  ACCGCTTGAAGTGTTCATCAGTCTCAGGATCGACTACCAGCAGCCGGGCC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTTGAAGTGTTCATCAGTCTCAGGATCGACTACCAGCAGCCGGGCC  297

seq1  TCGTCCTCCTGTGCCTTGATTCTGGCGACAACCTCGGCATGTCGCAGCCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTCCTGTGCCTTGATTCTGGCGACAACCTCGGCATGTCGCAGCCC  347

seq1  CTCCACGTTCTGCCCATTCACCTGCCGCCACCCACACAGGGTCAGAAAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACGTTCTGCCCATTCACCTGCCGCCACCCACACAGGGTCAGAAAGG  397

seq1  CCTAAGGGGCCCAGTCGGCCCAGTGCCACCCAGCCAGGTGTGCCATCAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGGGCCCAGTCGGCCCAGTGCCACCCAGCCAGGTGTGCCATCAAA  447

seq1  TATTCATCGAAGCCACCAGCAGCCAAAGAAGCAAGAAGAGTGCCAGCTCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCGAAGCCACCAGCAGCCAAAGAAGCAAGAAGAGTGCCAGCTCA  497

seq1  AGTTCCCTGTGTCTTCCCTCCTCCTGCAGGGACCCAGGGCCCATACATGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTGTGTCTTCCCTCCTCCTGCAGGGACCCAGGGCCCATACATGG  547

seq1  ACATTCAGGGACATACAGATACACGGGGACCCAGGGTACCTCAATGAGCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGGGACATACAGATACACGGGGACCCAGGGTACCTCAATGAGCC  597

seq1  GATCCTGGGCACGGAGGCCAGAGTGAGAAGCAGGAGAGCCAGGGTCCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGGCACGGAGGCCAGAGTGAGAAGCAGGAGAGCCAGGGTCCACA  647

seq1  GAGCGGATGTACTGGCCAGGCCGGGACTTGTCACTATGCAGGTTGAACCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGATGTACTGGCCAGGCCGGGACTTGTCACTATGCAGGTTGAACCC  697

seq1  GTAGCCCTGGGGTCCCCTTCGCAAGTGGCAGAGCCGGGGACGCAGCTCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGGGGTCCCCTTCGCAAGTGGCAGAGCCGGGGACGCAGCTCTC  747

seq1  TTGGGGGCCCATTGACATCCTGTAGACCCATAAGAGGTGACATCAGGCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCCCATTGACATCCTGTAGACCCATAAGAGGTGACATCAGGCTC  797

seq1  TACCCGCAGCCTCTCTGCCCTTATGCTCTAAGGAACCAATCCCAGGTTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGCAGCCTCTCTGCCCTTATGCTCTAAGGAACCAATCCCAGGTTTC  847

seq1  ATCAATGACACTATGTGCCCTGTGACTGAGGGGTTTAGTGAGGGAGCCAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGACACTATGTGCCCTGTGACTGAGGGGTTTAGTGAGGGAGCCAC  897

seq1  CTATTACACAGCTTTAGCTGTGGGGCTAGGGACAAAGCATGTTATCAAAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACACAGCTTTAGCTGTGGGGCTAGGGACAAAGCATGTTATCAAAC  947

seq1  ACGGAAACACCTAAGGAGCTAGCTCCTGGCAGACCTGTGGAAGAATTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAACACCTAAGGAGCTAGCTCCTGGCAGACCTGTGGAAGAATTC  995

seq1: chr17_24599954_24600683
seq2: B6Ng01-099H01.g_67_800

seq1  GAATTCACTCTGTAGACCAGATATGCCTCTCCCTCCCAAATGCTAGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGATATGCCTCTCCCTCCCAAATGCTAGGATT  50

seq1  AAAGGTTTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTTTAGCCCAAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTTTAGCCCAAGGCT  100

seq1  TGAACTTGAGAGCTTTCAGGGAAGAGATAAGCCAAGAATCCTGGACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGAGAGCTTTCAGGGAAGAGATAAGCCAAGAATCCTGGACTACT  150

seq1  TCTCTCAAAAGATATACTGAGGAGGAGTTGAAAAGCCAGCATCCAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAAAGATATACTGAGGAGGAGTTGAAAAGCCAGCATCCAGAGAA  200

seq1  TGCAGGAGTGACGAAATGTCAAGAGAGAGGATGAGTTGGGCATGAGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGTGACGAAATGTCAAGAGAGAGGATGAGTTGGGCATGAGGGGC  250

seq1  CCACCTAGAATTCTAGCATTGGGGAGGCTGAGGCCAAAGGATCACCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAGAATTCTAGCATTGGGGAGGCTGAGGCCAAAGGATCACCATGA  300

seq1  ATTTGAAGCTACAAAATAGTGAGTTTACCAGGCTGGGTTACATAAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGCTACAAAATAGTGAGTTTACCAGGCTGGGTTACATAAGAAGC  350

seq1  CCCAATCTCACAAAAGAAGCAACTGGGAATAGGGGGTGGGGAAGGACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTCACAAAAGAAGCAACTGGGAATAGGGGGTGGGGAAGGACCCT  400

seq1  GAAATAAAAAACAAAGGACGATGTTCCAGTAAATCTCCAACCCAAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAAACAAAGGACGATGTTCCAGTAAATCTCCAACCCAAAAAGG  450

seq1  CCCAGTTAAAGAAATCACAACTCAGTTAACTGGAATACAAGCTACACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTAAAGAAATCACAACTCAGTTAACTGGAATACAAGCTACACGCC  500

seq1  TAGATTGGGCAGATATGCCACTACACTACTCTCTTCCTATCTATGAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGGCAGATATGCCACTACACTACTCTCTTCCTATCTATGAGATC  550

seq1  TAGAAGCTGTGGTTTCTCCAGGCCATGTGCTTCTGCTCCATTCTCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTGTGGTTTCTCCAGGCCATGTGCTTCTGCTCCATTCTCCTCCC  600

seq1  ACCTCCTCTGTGGAGGTCTCTCCTCCC-TTCTCCCACAAACGTTCAGCTC  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTCCTCTGTGGAGGTCTCTCCTCCCTTTCTCCCACAAACGTTCAGCTC  650

seq1  CACCTTCCCTCCTACCGCCCAATCACTGGC-TCTAGCCTTTATTTGAGAA  698
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACCTTCCCTCCTACCGCCCAATCACTGGCTTCTAGCCTTTATTTGAGAA  700

seq1  GTTAAAGT-GGGGAGAAGGTTCACAA-GGCACCT  730
      |||||||| ||||||||||||||||| |||||||
seq2  GTTAAAGTGGGGGAGAAGGTTCACAAGGGCACCT  734