BAC Information

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BAC

Clone NameB6Ng01-099H06
Chromosome17 (Build37)
Map Location 71,806,281 - 71,939,434
singlet/doubletdoublet
Overlap geneLOC100043879, Ndc80, LOC668740, Spdya, LOC623451
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1
Downstream geneWdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099H06.bB6Ng01-099H06.g
ACCDH909240DH909241
length7141,135
definitionDH909240|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H06, 5' end.DH909241|Mus musculus domesticus DNA, BAC clone: B6Ng01-099H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,806,281 - 71,806,992)(71,938,282 - 71,939,434)
sequence
gaattctttatgtaagctcgctctctctctctctctctctctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtacagaggattgaatctagggct
ctcactgaatttctggaacacactttgtaacccaggcagaccttggactt
aaaatcttgcctcagcctccaagtaggaagacctagcccagctaccagac
taagtaaaaagagtacagccaggtacaccagttagtttttagtgtcatcc
taagagtctgaagttgcctgggaagaggaagccttacttgaagagctgcc
caaatgaggctggcctgtgagcatgcctatggaggactgtcttgattaga
actggtgtggagggcccagcccactacaggtgagtccatccctaggtaga
tgacagcgagggagccagagggcaggcaggcgagtgagcgagaagcactc
cacggtttctgcttgagctcctgtcctgacttcccccactggattgtgac
ccagaagtttaacacaaagaaatgattttctccctgaagttgcttcaagt
aatattatttatctgagcaactggaagccaataggatatcaggtatgaac
actcatccttctctctgactgagtgggctatgactagatgacttcctgtg
caagctatgtcttcttttttttttttttcttttttttttttttttttttt
tttttttgggtttt
gaattctgcttccaaaagtcagaacaaccattaacacaaatttacagtta
cattctcaaaaggaaattgaagttggaaatgaagagtttcacaaggagca
ccatggtgcacttcagtttcattttatgcttgtatttttaataataaata
ctatagattcttaagtgtgtattttaataataaatactatagattcttga
gtatgtattttaataataaatactatagattcttgagtatgtattttaat
aataaatactatagattcttaagtatgtattttaataataaatattatag
attttttaaaaaatatttatttatttatttattatatgtaagtacactgt
agctgtcttcagacaccccagaagagggcatcagatatcattacggatgg
ttgtgagccatcatgtagttgctgggatttgaactcacgaccttcagaaa
agcagtcggcgctcttaactgctgagccatctctccagcccatactatag
attcttaagtatgctgaccatattgactaacacattcatataataactat
cagatactcttcagggttttattttttatttattgtatagaaaatgaaat
atggtgtttttctagctcctacaacattgctgaagttcttccaagaaaca
agtttaggtactcatatgtacacattatttaggccatgaaatgggttttc
gatacattgatttatgaaacaggcttctccgtttggttataagcccatct
gtagagttactgtgtaatcactgacaaatgtttctgatagtaactagcca
aacagtctcaaaaatgcttaaaaaacaagttctgagaaaaagcttacaga
aaagggacagtgtttaacatttcaacactttttgtgaacaaactgtaaaa
catttgtacagtgtgcattttctgtacagaagagtcacattctgattttc
cacacagaccatgtccctgcattgcttgacttatcactggtaaagtggtc
gcacatgtcagtactgttttcagaatatatattgttttttttcatattcg
atgtatgacttaactgtctcctttttgaactagctctttgtcttctagtt
tacttttagctgtggaggatgtcagacccacctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71806281_71806992
seq2: B6Ng01-099H06.b_48_761

seq1  GAATTCTTTATGTAAGCTCGCTCTCTCTCTCTCTCTCTCTCTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGTAAGCTCGCTCTCTCTCTCTCTCTCTCTCTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGAGGATTGAATCTAGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGAGGATTGAATCTAGGGCT  100

seq1  CTCACTGAATTTCTGGAACACACTTTGTAACCCAGGCAGACCTTGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAATTTCTGGAACACACTTTGTAACCCAGGCAGACCTTGGACTT  150

seq1  AAAATCTTGCCTCAGCCTCCAAGTAGGAAGACCTAGCCCAGCTACCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGCCTCAGCCTCCAAGTAGGAAGACCTAGCCCAGCTACCAGAC  200

seq1  TAAGTAAAAAGAGTACAGCCAGGTACACCAGTTAGTTTTTAGTGTCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAAAGAGTACAGCCAGGTACACCAGTTAGTTTTTAGTGTCATCC  250

seq1  TAAGAGTCTGAAGTTGCCTGGGAAGAGGAAGCCTTACTTGAAGAGCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCTGAAGTTGCCTGGGAAGAGGAAGCCTTACTTGAAGAGCTGCC  300

seq1  CAAATGAGGCTGGCCTGTGAGCATGCCTATGGAGGACTGTCTTGATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGGCTGGCCTGTGAGCATGCCTATGGAGGACTGTCTTGATTAGA  350

seq1  ACTGGTGTGGAGGGCCCAGCCCACTACAGGTGAGTCCATCCCTAGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTGGAGGGCCCAGCCCACTACAGGTGAGTCCATCCCTAGGTAGA  400

seq1  TGACAGCGAGGGAGCCAGAGGGCAGGCAGGCGAGTGAGCGAGAAGCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCGAGGGAGCCAGAGGGCAGGCAGGCGAGTGAGCGAGAAGCACTC  450

seq1  CACGGTTTCTGCTTGAGCTCCTGTCCTGACTTCCCCCACTGGATTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTTCTGCTTGAGCTCCTGTCCTGACTTCCCCCACTGGATTGTGAC  500

seq1  CCAGAAGTTTAACACAAAGAAATGATTTTCTCCCTGAAGTTGCTTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTTTAACACAAAGAAATGATTTTCTCCCTGAAGTTGCTTCAAGT  550

seq1  AATATTATTTATCTGAGCAACTGGAAGCCAATAGGATATCAGGTATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTATCTGAGCAACTGGAAGCCAATAGGATATCAGGTATGAAC  600

seq1  ACTCATCCTTCTCTCTGACTGAGTGGGCTATGACTAGATGACTTCCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCCTTCTCTCTGACTGAGTGGGCTATGACTAGATGACTTCCTGTG  650

seq1  CAAGCTATGTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATGTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTT  700

seq1  TTTTTT--GGTTTT  712
      ||||||  ||||||
seq2  TTTTTTTGGGTTTT  714

seq1: chr17_71938282_71939434
seq2: B6Ng01-099H06.g_69_1203 (reverse)

seq1  TCAGGTGTGGTCTGAACTTCCTCCACCAGCTTAAAAGGTTAAACTAGAAG  50
      ||||||| |||||| || ||||||| |||| ||||||  |||||||||||
seq2  TCAGGTG-GGTCTG-ACATCCTCCA-CAGC-TAAAAG--TAAACTAGAAG  44

seq1  ACAAAAGAGCTAGTTTAAAAGAGAGAACAGTTAAGGTCATAACACTGAAT  100
      || |||||||||||| ||||  ||| |||||||| ||||| |||  ||||
seq2  AC-AAAGAGCTAGTTCAAAAAGGAG-ACAGTTAA-GTCAT-ACATCGAAT  90

seq1  TAATGAAAAAAAAAACAATTAATATATTCTGAAAACAGTACTGACATGTG  150
        |||  ||||||||||||  |||||||||||||||||||||||||||||
seq2  --ATG--AAAAAAAACAAT--ATATATTCTGAAAACAGTACTGACATGTG  134

seq1  CGACCACTTTACCAGTGAATAAGTCAAGCAATGCAGGGACATGGTCTGTG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CGACCACTTTACCAGTG-ATAAGTCAAGCAATGCAGGGACATGGTCTGTG  183

seq1  TGGAAAATCAGAATGTGACTCTTCTGTAACAGAAAATGCACACTGTACAA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAAAATCAGAATGTGACTCTTCTGT-ACAGAAAATGCACACTGTACAA  232

seq1  ATGTTTTACAGTTTGTTCACAAAAAGTGTTGAAATGTTAAACACTGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTACAGTTTGTTCACAAAAAGTGTTGAAATGTTAAACACTGTCCC  282

seq1  TTTTCTGTAAGCTTTTTCTCAGAACTTGTTTTTTAAGCATTTTTGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTAAGCTTTTTCTCAGAACTTGTTTTTTAAGCATTTTTGAGACT  332

seq1  GTTTGGCTAGTTACTATCAGAAACATTTGTCAGTGATTACACAGTAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTAGTTACTATCAGAAACATTTGTCAGTGATTACACAGTAACTC  382

seq1  TACAGATGGGCTTATAACCAAACGGAGAAGCCTGTTTCATAAATCAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGGCTTATAACCAAACGGAGAAGCCTGTTTCATAAATCAATGT  432

seq1  ATCGAAAACCCATTTCATGGCCTAAATAATGTGTACATATGAGTACCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAAACCCATTTCATGGCCTAAATAATGTGTACATATGAGTACCTAA  482

seq1  ACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCTTGGAAGAACTTCAGCAATGTTGTAGGAGCTAGAAAAACAC  532

seq1  CATATTTCATTTTCTATACAATAAATAAAAAATAAAACCCTGAAGAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCATTTTCTATACAATAAATAAAAAATAAAACCCTGAAGAGTAT  582

seq1  CTGATAGTTATTATATGAATGTGTTAGTCAATATGGTCAGCATACTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTTATTATATGAATGTGTTAGTCAATATGGTCAGCATACTTAAG  632

seq1  AATCTATAGTATGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCGCCGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAGTATGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCGCCGACT  682

seq1  GCTTTTCTGAAGGTCGTGAGTTCAAATCCCAGCAACTACATGATGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGAAGGTCGTGAGTTCAAATCCCAGCAACTACATGATGGCTCA  732

seq1  CAACCATCCGTAATGATATCTGATGCCCTCTTCTGGGGTGTCTGAAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCCGTAATGATATCTGATGCCCTCTTCTGGGGTGTCTGAAGACA  782

seq1  GCTACAGTGTACTTACATATAATAAATAAATAAATAAATATTTTTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGTACTTACATATAATAAATAAATAAATAAATATTTTTTAAAA  832

seq1  AATCTATAATATTTATTATTAAAATACATACTTAAGAATCTATAGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAATATTTATTATTAAAATACATACTTAAGAATCTATAGTATTT  882

seq1  ATTATTAAAATACATACTCAAGAATCTATAGTATTTATTATTAAAATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAAATACATACTCAAGAATCTATAGTATTTATTATTAAAATACA  932

seq1  TACTCAAGAATCTATAGTATTTATTATTAAAATACACACTTAAGAATCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGAATCTATAGTATTTATTATTAAAATACACACTTAAGAATCTA  982

seq1  TAGTATTTATTATTAAAAATACAAGCATAAAATGAAACTGAAGTGCACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTATTATTAAAAATACAAGCATAAAATGAAACTGAAGTGCACCA  1032

seq1  TGGTGCTCCTTGTGAAACTCTTCATTTCCAACTTCAATTTCCTTTTGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCCTTGTGAAACTCTTCATTTCCAACTTCAATTTCCTTTTGAGA  1082

seq1  ATGTAACTGTAAATTTGTGTTAATGGTTGTTCTGACTTTTGGAAGCAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTGTAAATTTGTGTTAATGGTTGTTCTGACTTTTGGAAGCAGAA  1132

seq1  TTC  1153
      |||
seq2  TTC  1135