BAC Information

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BAC

Clone NameB6Ng01-099O11
Chromosome17 (Build37)
Map Location 28,890,258 - 29,047,795
singlet/doubletdoublet
Overlap geneMapk13, Brpf3, Pnpla1, 4930539E08Rik
Upstream geneD17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318
Downstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O11.bB6Ng01-099O11.g
ACCDH909566DH909567
length1,0771,020
definitionDH909566|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O11, 5' end.DH909567|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,890,258 - 28,891,332)(29,046,775 - 29,047,795)
sequence
gaattccagttgcaacaccttcatacagacatacatgcaggtaaaacacc
agtgcacatgaaaataagtactgacacacacacatgagtttggcctctaa
aaagaaagttctgaacaggtatgacagtactcctgtaatcccagcattcg
tgaaatggagaaggagagagacagatctctgttttagccaagcttagtct
acatagcaagtttcaggctacccagggctaggtagctacataatgagatg
agacattgtaccaaaaaagaataagaaatgaataaataaactaattaatt
aaaacaaagcctgggagtagggagatgactctttcagttaaatacttgcc
atgcaaggacaaagaccaggattcaatccccagctcccacataaagccat
gcgtggtgacttgagctcttaagtgtagttctgggggccagccactcact
ggtaggtctccatagctcccagccagcccagccgaatcaagttacaggtc
ccactgagagatccagtctcaaaaaagcaaggcacgtggctgaattggta
agatcactggagaacatggcttcgatccccagaacccacatgatgcttcc
caacactctctaacgccagtttcaagggctccaaccatgcccctccctct
tcagacctctgcaggcaccaggcattctagtgatgcccagacagacacat
gggcataaaatacatccatacacataaaataaatgaatccaaaaaggaga
gaaaaggacagaggcaggtggctcacacctttaatcccagcactagggag
gcagaggcaggtgaatttctgagttcgaggccagccctggtctacagagt
gagttccaggacagccagggctacacagagaaactctgtcttgaaaaatc
cacagagacagacagacagacagacagacagccagccatgtatgtcaact
gtgagaagtgggggggacaggtcggttacctggtgcagtctaggtaagga
ctcatgctgtggatgggaaagctgggagagaagacagttcatgctgccac
cctcagtggtcttgaagacttcctcaa
gaattccaggacagccagggctacacagagaccctgacttaaaaacaaca
agaacctaatgaaagaagtaggggaaaagtcatatgaagaccatgcaggg
gtgtggcctagtggggaaagggcatatagagacaatgcaggggtgtggcc
cggagttagattgcttgcctagcatgttccaggtcctgggttccagctac
agtgctgaaagcataggtcttacatacagaaaagtacacagatcaaaata
cagcgtgctggcctgagtttgagacaggccaggtcaggtgcagtggcaca
cctaaggagactgaggcatgacccagagttcaaggccagcctgggctaca
gtagtgaacttgcctctaaaccaacaaagaggtgaaagaagaagggaagg
agggacagacagtcggagggacagagggacaggcagaggcaggtaggcaa
cagcacccagaaacacctggctcccctcatggctgtagcaggaacagcag
tttggctcttcctgagccttcgggtggaaacaggactctgggcgcaggcg
ctttgaggttggcttttccctgtgagctgcagtactgactgacctttgat
tctcagaccgactcactccagtgtgagcgaggaggagggtgagggtcctg
tttctgctgagacggaggtctcctgacaaattagttattttagagtcaca
aactccaaatcttgtggggagagagaggtgagcatgtcacggttgtgttc
ttctgggccactctggcgatgccactcacctgctggaggagaatcggatt
ctgtttcctaatctaggaaatgggggtagtgaccgcctaacctgtggggc
tggacagggggactttaaacaggtcagaagctttgggaaagcatcactag
gaaaggtgacagactgtgcgtgattgcttggtgggcgttggtagcctttc
cagggaaatcttcttgttgttttggtgtacccgtggagacccgtagggaa
aaaatagaactcgatccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28890258_28891332
seq2: B6Ng01-099O11.b_50_1126

seq1  GAATTCCAGTTGCAACACCTTCATACAGACATACATGCAGGTAAAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGCAACACCTTCATACAGACATACATGCAGGTAAAACACC  50

seq1  AGTGCACATGAAAATAAGTACTGACACACACACATGAGTTTGGCCTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATGAAAATAAGTACTGACACACACACATGAGTTTGGCCTCTAA  100

seq1  AAAGAAAGTTCTGAACAGGTATGACAGTACTCCTGTAATCCCAGCATTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTTCTGAACAGGTATGACAGTACTCCTGTAATCCCAGCATTCG  150

seq1  TGAAATGGAGAAGGAGAGAGACAGATCTCTGTTTTAGCCAAGCTTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAGAAGGAGAGAGACAGATCTCTGTTTTAGCCAAGCTTAGTCT  200

seq1  ACATAGCAAGTTTCAGGCTACCCAGGGCTAGGTAGCTACATAATGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAAGTTTCAGGCTACCCAGGGCTAGGTAGCTACATAATGAGATG  250

seq1  AGACATTGTACCAAAAAAGAATAAGAAATGAATAAATAAACTAATTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGTACCAAAAAAGAATAAGAAATGAATAAATAAACTAATTAATT  300

seq1  AAAACAAAGCCTGGGAGTAGGGAGATGACTCTTTCAGTTAAATACTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCCTGGGAGTAGGGAGATGACTCTTTCAGTTAAATACTTGCC  350

seq1  ATGCAAGGACAAAGACCAGGATTCAATCCCCAGCTCCCACATAAAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGACAAAGACCAGGATTCAATCCCCAGCTCCCACATAAAGCCAT  400

seq1  GCGTGGTGACTTGAGCTCTTAAGTGTAGTTCTGGGGGCCAGCCACTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGACTTGAGCTCTTAAGTGTAGTTCTGGGGGCCAGCCACTCACT  450

seq1  GGTAGGTCTCCATAGCTCCCAGCCAGCCCAGCCGAATCAAGTTACAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTCTCCATAGCTCCCAGCCAGCCCAGCCGAATCAAGTTACAGGTC  500

seq1  CCACTGAGAGATCCAGTCTCAAAAAAGCAAGGCACGTGGCTGAATTGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGAGATCCAGTCTCAAAAAAGCAAGGCACGTGGCTGAATTGGTA  550

seq1  AGATCACTGGAGAACATGGCTTCGATCCCCAGAACCCACATGATGCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGGAGAACATGGCTTCGATCCCCAGAACCCACATGATGCTTCC  600

seq1  CAACACTCTCTAACGCCAGTTTCAAGGGCTCCAACCATGCCCCTCCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTCTCTAACGCCAGTTTCAAGGGCTCCAACCATGCCCCTCCCTCT  650

seq1  TCAGACCTCTGCAGGCACCAGGCATTCTAGTGATGCCCAGACAGACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTCTGCAGGCACCAGGCATTCTAGTGATGCCCAGACAGACACAT  700

seq1  GGGCATAAAATACATCCATACACATAAAATAAATGAATCCAAAAAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAAATACATCCATACACATAAAATAAATGAATCCAAAAAGGAGA  750

seq1  GAAAAGGACAGAGGCAGGTGGCTCACACCTTTAATCCCAGCACTAGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACAGAGGCAGGTGGCTCACACCTTTAATCCCAGCACTAGGGAG  800

seq1  GCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCAG-CCTGGTCTACAGAGT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGAGGCAGGTGAATTTCTGAGTTCGAGGCCAGCCCTGGTCTACAGAGT  850

seq1  GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAATC  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTTGAAAAATC  900

seq1  CACAGAGACAGACAGACAGACAGACAGACAGCCAGCCATGTATGTCAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACAGACAGACAGACAGACAGACAGCCAGCCATGTATGTCAACT  950

seq1  GTGAGAAGT-GGGGGGACAGGTCGGTTACCT-GTGCAGTCTTAGGTAAGA  997
      ||||||||| ||||||||||||||||||||| |||||||| |||||||| 
seq2  GTGAGAAGTGGGGGGGACAGGTCGGTTACCTGGTGCAGTC-TAGGTAAGG  999

seq1  ACTCCATGCTGTGGATGGGGAAAGCTGGGAGAG-AGACAGTTCCATGCTG  1046
      ||| |||||||||||| |||||||||||||||| |||||||| |||||||
seq2  ACT-CATGCTGTGGAT-GGGAAAGCTGGGAGAGAAGACAGTT-CATGCTG  1046

seq1  CCACCCTCAGTGGTCT--GAGACTTCCCCAA  1075
      ||||||||||||||||   |||||||| |||
seq2  CCACCCTCAGTGGTCTTGAAGACTTCCTCAA  1077

seq1: chr17_29046775_29047795
seq2: B6Ng01-099O11.g_68_1087 (reverse)

seq1  CAAGGATCGGGCTCTCTTTTTTCCCTTCGGGGTCTCCACCGGGCTACAAC  50
      ||||||||| | ||| |||||||||| | ||||||||||  || ||| ||
seq2  CAAGGATCGAGTTCTATTTTTTCCCTAC-GGGTCTCCAC--GGGTAC-AC  46

seq1  CAAAACAAACAGAAGATTTCCCTGG-AAGGCTAACCAACGCCCACC-AGC  98
      ||||||||  ||||||||||||||| |||||| ||||||||||||| |||
seq2  CAAAACAACAAGAAGATTTCCCTGGAAAGGCT-ACCAACGCCCACCAAGC  95

seq1  ATTCACGCACAGTCTGTCACCTTTCCTGGTGATGCTTT-CCAAAGCTTCT  147
      | ||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  AATCACGCACAGTCTGTCACCTTTCCTAGTGATGCTTTCCCAAAGCTTCT  145

seq1  GACCTGTTTAAAGT-CCCCTGTCCAGCCCCACAGGTTAGGCGGTCACTAC  196
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACCTGTTTAAAGTCCCCCTGTCCAGCCCCACAGGTTAGGCGGTCACTAC  195

seq1  CCCCATTTCCTAGATTAGGAAACAGAATCCGATTCTCCTCCAGCAGGTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTCCTAGATTAGGAAACAGAATCCGATTCTCCTCCAGCAGGTGA  245

seq1  GTGGCATCGCCAGAGTGGCCCAGAAGAACACAACCCTGACATGCTCACCT  296
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGCATCGCCAGAGTGGCCCAGAAGAACACAACCGTGACATGCTCACCT  295

seq1  CTCTCTCCCCACAAGATTTGGAGTTTGTGACTCTAAAATAACTAATTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCCCACAAGATTTGGAGTTTGTGACTCTAAAATAACTAATTTGT  345

seq1  CAGGAGACCTCCGTCTCAGCAGAAACAGGACCCTCACCCTCCTCCTCGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACCTCCGTCTCAGCAGAAACAGGACCCTCACCCTCCTCCTCGCT  395

seq1  CACACTGGAGTGAGTCGGTCTGAGAATCAAAGGTCAGTCAGTACTGCAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGAGTGAGTCGGTCTGAGAATCAAAGGTCAGTCAGTACTGCAGC  445

seq1  TCACAGGGAAAAGCCAACCTCAAAGCGCCTGCGCCCAGAGTCCTGTTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGAAAAGCCAACCTCAAAGCGCCTGCGCCCAGAGTCCTGTTTCC  495

seq1  ACCCGAAGGCTCAGGAAGAGCCAAACTGCTGTTCCTGCTACAGCCATGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAAGGCTCAGGAAGAGCCAAACTGCTGTTCCTGCTACAGCCATGAG  545

seq1  GGGAGCCAGGTGTTTCTGGGTGCTGTTGCCTACCTGCCTCTGCCTGTCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAGGTGTTTCTGGGTGCTGTTGCCTACCTGCCTCTGCCTGTCCC  595

seq1  TCTGTCCCTCCGACTGTCTGTCCCTCCTTCCCTTCTTCTTTCACCTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTCCGACTGTCTGTCCCTCCTTCCCTTCTTCTTTCACCTCTTT  645

seq1  GTTGGTTTAGAGGCAAGTTCACTACTGTAGCCCAGGCTGGCCTTGAACTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTAGAGGCAAGTTCACTACTGTAGCCCAGGCTGGCCTTGAACTC  695

seq1  TGGGTCATGCCTCAGTCTCCTTAGGTGTGCCACTGCACCTGACCTGGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCATGCCTCAGTCTCCTTAGGTGTGCCACTGCACCTGACCTGGCCT  745

seq1  GTCTCAAACTCAGGCCAGCACGCTGTATTTTGATCTGTGTACTTTTCTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAACTCAGGCCAGCACGCTGTATTTTGATCTGTGTACTTTTCTGT  795

seq1  ATGTAAGACCTATGCTTTCAGCACTGTAGCTGGAACCCAGGACCTGGAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGACCTATGCTTTCAGCACTGTAGCTGGAACCCAGGACCTGGAAC  845

seq1  ATGCTAGGCAAGCAATCTAACTCCGGGCCACACCCCTGCATTGTCTCTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCAAGCAATCTAACTCCGGGCCACACCCCTGCATTGTCTCTAT  895

seq1  ATGCCCTTTCCCCACTAGGCCACACCCCTGCATGGTCTTCATATGACTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTTCCCCACTAGGCCACACCCCTGCATGGTCTTCATATGACTTT  945

seq1  TCCCCTACTTCTTTCATTAGGTTCTTGTTGTTTTTAAGTCAGGGTCTCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACTTCTTTCATTAGGTTCTTGTTGTTTTTAAGTCAGGGTCTCTG  995

seq1  TGTAGCCCTGGCTGTCCTGGAATTC  1021
      |||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAATTC  1020