BAC Information

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BAC

Clone NameB6Ng01-100K21
Chromosome1 (Build37)17 (Build37)
Map Location 3,037,468 - 3,037,91760,521,878 - 60,522,677
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneXkr4, LOC100038975, LOC664792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K21.bB6Ng01-100K21.g
ACCDH910107DH910108
length1,029799
definitionDH910107|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K21, 5' end.DH910108|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,037,468 - 3,037,917)(60,521,878 - 60,522,677)
sequence
gaattccaactctcaaaaggaaatgcaggaacaaagagtagagcagaaac
tgaaggaaagtccatcaagagactgccccacctagagatccatcccatct
gctgacaccaaacacagacattgcttatgccatgaagtgcttactgacag
gagcctaatatagttgtcccctgagaggctctgccagagcaggaccagaa
ccaatgcagatgcagatatatacacagccaaacattgaactgagcatggg
gaccccaatggggaagttagggcaaggactgtaggagctgaaggggtttg
caacctcataggaagaacaacaatgtcaaccaaccagaaaccccaaagct
ctcaaagactaaatcaccaaccaaatagtacacaggggctacacatggct
ccagctagatatgtagcagaagattgctgtatatggcatcacagggaagg
gagccacttggtcctgtgaaggatcgatgtcccaggatagggaaatacta
ggctgctgaggcaggagtgggtgggcaggtaggagagcaacctcatagaa
ccaagaggagggaggaggagataggggttttacccatggaaattacacaa
aatatgtagtctcaaacctgccctgctaacctttgcatgtcccctaccta
cctcaaaagctacagcaagggtcttcgggtgctgagtgcttgcctagcat
gtacactaggctaattttagtcaccagcatcttaaataggcaagcaaggg
aaaactcattgagggcttctcttatcctctctgctgccttgtcaccttgt
caacaggtacttcctgaatcagcttgctccactgcttccaggactctgga
aagctagaagtagtatattgtagaaaggtctgggggagaaaagcttatgg
ctgccagaaacagatggaaagaagagtaccccaaacaaatctaccagagg
tacaaacaaacccttggtccacttcacattcctctgtgtccacatctccc
atatgtcccatcccaaattcatcgaagat
gaattctcataattaagaaataagcaaagaaatcaaacaataagaaatcc
atgactctcttttatcagcttccaaaggcgaatagctcaagtgtctctgt
gagctcatatgtacactgtcttatggtgcctggaaaacactgtttttttg
atgttattaaccactacttttccatacaatcttttgctccttcttctgag
atctcagaactttggggtatgggctatgctatgtatgtctgatttagggc
ggaacacttcacaatcttttattctttgcacatttataagttgggggagg
gtaatattctaattgtcatctattgaaaggagaagattctttgatgagag
ttgaaagatgcactgataaaaggattagcaataactcaacaggagacatt
ttaatactatgttcattttacagagtgatattttgaattcaaacctgaga
attatgaatgacctagcaatagattcttggtccaattagcactgccaagg
aagtcttctaaggaaaaacctttgatcaaaccagaaaagatggtaacatt
cctatgctctgaataatttaaaagaagctcatcaatatcagctggtgtcc
acttaattacagcatcaatagaagcaatgcccttcctgccttctttcctt
ctttccttctttccttctttccttctttccttcctaccttccatccttcc
ttctttcctacctttcccctccctcccttcatcccttctttacttccttc
ctcccgtcaccctgtcttccttcgatcttcctctctttcctactttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3037468_3037917
seq2: B6Ng01-100K21.b_628_1075

seq1  ACCCATGGAAATTACACAAAATATGTAGTCTCAAACCTGCCCTGCTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGAAATTACACAAAATATGTAGTCTCAAACCTGCCCTGCTAACC  50

seq1  -TTGCATGTCCCCTACCTACCTCAAAAGCTACAGCAAGGGTCTTCGGGTG  99
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTCCCCTACCTACCTCAAAAGCTACAGCAAGGGTCTTCGGGTG  100

seq1  CTGAGTGCTTGCCTAGCATGTACACTAGGCTAATTTTAGTCACCAGCATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTTGCCTAGCATGTACACTAGGCTAATTTTAGTCACCAGCATC  150

seq1  TTAAATAGGCAAGCAAGGG-AAACTCAGTGAGGGCTTCTCTTATCCTCTC  198
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TTAAATAGGCAAGCAAGGGAAAACTCATTGAGGGCTTCTCTTATCCTCTC  200

seq1  TGCTGCCTTGTCACCTTGTCAACAGGTACTTCCTGAATCAGCTTGCTCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTTGTCACCTTGTCAACAGGTACTTCCTGAATCAGCTTGCTCCA  250

seq1  CTGCTTCCAGGACTCTGGAAAGCTAGAAGTAGTATATTGTAGAAAGGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCAGGACTCTGGAAAGCTAGAAGTAGTATATTGTAGAAAGGTCT  300

seq1  GGGGGAGAAAAGCTTATGGCTGCCAGAAAGCAGATGGAAAGAAGAGAACC  348
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GGGGGAGAAAAGCTTATGGCTGCCAGAAA-CAGATGGAAAGAAGAGTACC  349

seq1  CAAAACAAATCTACCAGAGGTACAAACAAACCCTTTGTCCCACTTCACAT  398
      | ||||||||||||||||||||||||||||||||| || |||||||||||
seq2  CCAAACAAATCTACCAGAGGTACAAACAAACCCTTGGT-CCACTTCACAT  398

seq1  TCCTCTGTGTCCCACATCTCCCAATGGTCCCATCCCAAATTCATCAAAAG  448
      |||||||||| ||||||||||||   |||||||||||||||||||  |||
seq2  TCCTCTGTGT-CCACATCTCCCATATGTCCCATCCCAAATTCATC-GAAG  446

seq1  AT  450
      ||
seq2  AT  448

seq1: chr17_60521878_60522677
seq2: B6Ng01-100K21.g_68_866

seq1  GAATTCTCATAATTAAGAAATAAGCAAAGAAATCAAACAATAAGAAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAATTAAGAAATAAGCAAAGAAATCAAACAATAAGAAATCC  50

seq1  ATGACTCTCTTTTATCAGCTTCCAAAGGCGAATAGCTCAAGTGTCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTCTTTTATCAGCTTCCAAAGGCGAATAGCTCAAGTGTCTCTGT  100

seq1  GAGCTCATATGTACACTGTCTTATGGTGCCTGGAAAACACTGTTTTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATATGTACACTGTCTTATGGTGCCTGGAAAACACTGTTTTTTTG  150

seq1  ATGTTATTAACCACTACTTTTCCATACAATCTTTTGCTCCTTCTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTAACCACTACTTTTCCATACAATCTTTTGCTCCTTCTTCTGAG  200

seq1  ATCTCAGAACTTTGGGGTATGGGCTATGCTATGTATGTCTGATTTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAACTTTGGGGTATGGGCTATGCTATGTATGTCTGATTTAGGGC  250

seq1  GGAACACTTCACAATCTTTTATTCTTTGCACATTTATAAGTTGGGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTTCACAATCTTTTATTCTTTGCACATTTATAAGTTGGGGGAGG  300

seq1  GTAATATTCTAATTGTCATCTATTGAAAGGAGAAGATTCTTTGATGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTCTAATTGTCATCTATTGAAAGGAGAAGATTCTTTGATGAGAG  350

seq1  TTGAAAGATGCACTGATAAAAGGATTAGCAATAACTCAACAGGAGACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGATGCACTGATAAAAGGATTAGCAATAACTCAACAGGAGACATT  400

seq1  TTAATACTATGTTCATTTTACAGAGTGATATTTTGAATTCAAACCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTATGTTCATTTTACAGAGTGATATTTTGAATTCAAACCTGAGA  450

seq1  ATTATGAATGACCTAGCAATAGATTCTTGGTCCAATTAGCACTGCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAATGACCTAGCAATAGATTCTTGGTCCAATTAGCACTGCCAAGG  500

seq1  AAGTTTTCTAAGGCAAAACCTTTAATCTAACCAGAAAAGTTGGTAACATT  550
      |||| |||||||| ||||||||| ||| ||||||||||| ||||||||||
seq2  AAGTCTTCTAAGGAAAAACCTTTGATCAAACCAGAAAAGATGGTAACATT  550

seq1  CCTATGCTCTGAATATTTTAAAAGAAGCTCATCAATATCAGCTGGTGTCC  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTATGCTCTGAATAATTTAAAAGAAGCTCATCAATATCAGCTGGTGTCC  600

seq1  ACTTAATTACAGCATCAATATAAGCAATGCCCTTCCTGCCTTCTTTCCTT  650
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTTAATTACAGCATCAATAGAAGCAATGCCCTTCCTGCCTTCTTTCCTT  650

seq1  CTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCC  700
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  CTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCCTACCTTCCATCCTTCC  700

seq1  TTCTTTCCTTCCTTTCCCCTCCCTCCCTTCTTCCCTTCTTTACTTCCTTC  750
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TTCTTTCCTACCTTTCCCCTCCCTCCCTTCATCCCTTCTTTACTTCCTTC  750

seq1  CTCCCTTCCACCCTCTCTTCCTTCTTTCTTCCTTTCTTTCCTTCTTTGTT  800
      ||||| | |||||| |||||||||  ||||||| |||||||| |||||||
seq2  CTCCCGT-CACCCTGTCTTCCTTCGATCTTCCTCTCTTTCCTACTTTGTT  799