BAC Information

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BAC

Clone NameB6Ng01-100K22
Chromosome17 (Build37)
Map Location 51,838,637 - 51,973,605
singlet/doubletdoublet
Overlap geneSatb1, EG628919
Upstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
Downstream geneLOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K22.bB6Ng01-100K22.g
ACCDH910109DH910110
length4641,143
definitionDH910109|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K22, 5' end.DH910110|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,973,136 - 51,973,605)(51,838,637 - 51,839,776)
sequence
tcagcccacagtcactttccaggaacttgcctgcaaacagctctgcgctg
gagggatggaactcccagcaatctcaatcctgccaccctgactgccttcg
ctccacatacaattatttatggggacttaatgagagagcaagccttatgt
gaaagaacgcaagaaagtgcagctgctaaaaacagacccaggcagttcta
cagtccttatttttacaactgagcttctgcaattcctgccacgaacctaa
cagctccactccttgccaaacacacaaagagaaaagtaaaaactgttttc
gttctgcaacccccttaacttcgagtaaacagtagtaattttctatcgtc
acgttcaatgcaaatttcccaaaggcgacacaacaggaaacaaaagacct
gttagttgatagcttccttagagctgggggttgtgtggggaaggagtagc
aggggagtgggtta
gaattcttagcaggtctctagattctgtctaaaaatattggcagcaacat
ctgccctctttgtttgatgcatgctgagaaggctttaatgaagccagaat
aggtaggctcttagctttccagaggtgtataaagatcctttacccagata
tcaatatagactgaatttcagcttctttggagattatgaaatcctctgta
aattatattttggtttctggaaaatagggatttactaagaaaaacaagac
agagactgtaagtatcatgtgtgctgtgaacaggtctcttgtctcctgga
taatccatctactcttcaacatggccttggacctactcatggaacttata
tgggtggtttttttatatccgtttctcattttatttccttatgtttgtgt
ctaaaacaagagaaaagaagagaataaaccccaaatcatcatgtaagatt
gttttggaattcccttgcaacttttattgggaaaagttattgcatgttcc
acatctatatatggtaaggggctcttagtttgtatgcatttataattttt
attattttccctcattcacaaagaacagaaatggaaacccacatcatgta
gacagtcatcagagagctgaggctaacagcaggtacacttgtctccagac
atgctgcccagtgctttgcttcctctgtccactgattaccatgcctagtc
ttctagagtttctctgctgacatcttgaaacctgaactctttgaatggaa
ggcctggggtcaagtagagcaaggaattgagggaaactatctcaggctgt
gttacagacttgagttgaggctagctagtgtagtggtggcctgagggagg
gtatttctgatccgtgctactattcccttgggcaagtttgggagctagga
agcagatgttggtttttgtgagtgtatcaagtctgagactttcttattct
gttttctttaaagctctgatgcatggcggcacgtttcattctgccatgaa
gcttgtgattgttttccggaattattaatttacaggtagtgcttgggtga
gttctattgtttcaagtagagtacaggcaatgaaacaaatggagacaatg
ggtgacatcccacctcttcaagccatggataggaagatcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51973136_51973605
seq2: B6Ng01-100K22.b_45_514 (reverse)

seq1  TAACCCACTCCCCTGCTACTCCTTCCCCACACAACCCCCAGCTCTAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACTCCCCTGCTACTCCTTCCCCACACAACCCCCAGCTCTAAGGA  50

seq1  AGCTATCAACTAACAGGTCTTTTGTTTCCTGTTGTGTCGCCTTTGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCAACTAACAGGTCTTTTGTTTCCTGTTGTGTCGCCTTTGGGAAA  100

seq1  TTTGCATTGAACGTGACGATAGAAAATTACTACTGTTTACTCGAAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTGAACGTGACGATAGAAAATTACTACTGTTTACTCGAAGTTAA  150

seq1  GGGGGTTGCAGAACGAAAACAGTTTTTACTTTTCTCTTTGTGTGTTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGCAGAACGAAAACAGTTTTTACTTTTCTCTTTGTGTGTTTGGC  200

seq1  AAGGAGTGGAGCTGTTAGGTTCGTGGCAGGAATTGCAGAAGCTCAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGGAGCTGTTAGGTTCGTGGCAGGAATTGCAGAAGCTCAGTTGT  250

seq1  AAAAATAAGGACTGTAGAACTGCCTGGGTCTGTTTTTAGCAGCTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGGACTGTAGAACTGCCTGGGTCTGTTTTTAGCAGCTGCACTT  300

seq1  TCTTGCGTTCTTTCACATAAGGCTTGCTCTCTCATTAAGTCCCCATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCGTTCTTTCACATAAGGCTTGCTCTCTCATTAAGTCCCCATAAAT  350

seq1  AATTGTATGTGGAGCGAAGGCAGTCAGGGTGGCAGGATTGAGATTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTATGTGGAGCGAAGGCAGTCAGGGTGGCAGGATTGAGATTGCTGG  400

seq1  GAGTTCCATCCCTCCAGCGCAGAGCTGTTTGCAGGCAAGTTCCTGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCATCCCTCCAGCGCAGAGCTGTTTGCAGGCAAGTTCCTGGAAAG  450

seq1  TGACTGTGGGCTGAGAATTC  470
      ||||||||||||||||||||
seq2  TGACTGTGGGCTGAGAATTC  470

seq1: chr17_51838637_51839776
seq2: B6Ng01-100K22.g_68_1210

seq1  GAATTCTTAGCAGGTCTCTAGATTCTGTCTAAAAATATTGGCAGCAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCAGGTCTCTAGATTCTGTCTAAAAATATTGGCAGCAACAT  50

seq1  CTGCCCTCTTTGTTTGATGCATGCTGAGAAGGCTTTAATGAAGCCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTTTGTTTGATGCATGCTGAGAAGGCTTTAATGAAGCCAGAAT  100

seq1  AGGTAGGCTCTTAGCTTTCCAGAGGTGTATAAAGATCCTTTACCCAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCTCTTAGCTTTCCAGAGGTGTATAAAGATCCTTTACCCAGATA  150

seq1  TCAATATAGACTGAATTTCAGCTTCTTTGGAGATTATGAAATCCTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATAGACTGAATTTCAGCTTCTTTGGAGATTATGAAATCCTCTGTA  200

seq1  AATTATATTTTGGTTTCTGGAAAATAGGGATTTACTAAGAAAAACAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTTTGGTTTCTGGAAAATAGGGATTTACTAAGAAAAACAAGAC  250

seq1  AGAGACTGTAAGTATCATGTGTGCTGTGAACAGGTCTCTTGTCTCCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGTAAGTATCATGTGTGCTGTGAACAGGTCTCTTGTCTCCTGGA  300

seq1  TAATCCATCTACTCTTCAACATGGCCTTGGACCTACTCATGGAACTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATCTACTCTTCAACATGGCCTTGGACCTACTCATGGAACTTATA  350

seq1  TGGGTGGTTTTTTTATATCCGTTTCTCATTTTATTTCCTTATGTTTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTTTTTTTATATCCGTTTCTCATTTTATTTCCTTATGTTTGTGT  400

seq1  CTAAAACAAGAGAAAAGAAGAGAATAAACCCCAAATCATCATGTAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAAGAGAAAAGAAGAGAATAAACCCCAAATCATCATGTAAGATT  450

seq1  GTTTTGGAATTCCCTTGCAACTTTTATTGGGAAAAGTTATTGCATGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGAATTCCCTTGCAACTTTTATTGGGAAAAGTTATTGCATGTTCC  500

seq1  ACATCTATATATGGTAAGGGGCTCTTAGTTTGTATGCATTTATAATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATATATGGTAAGGGGCTCTTAGTTTGTATGCATTTATAATTTTT  550

seq1  ATTATTTTCCCTCATTCACAAAGAACAGAAATGGAAACCCACATCATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCCCTCATTCACAAAGAACAGAAATGGAAACCCACATCATGTA  600

seq1  GACAGTCATCAGAGAGCTGAGGCTAACAGCAGGTACACTTGTCTCCAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCATCAGAGAGCTGAGGCTAACAGCAGGTACACTTGTCTCCAGAC  650

seq1  ATGCTGCCCAGTGCTTTGCTTCCTCTGTCCACTGATTACCATGCCTAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCCAGTGCTTTGCTTCCTCTGTCCACTGATTACCATGCCTAGTC  700

seq1  TTCTAGAGTTTCTCTGCTGACATCTTGAAACCTGAACTCTTTGAATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTTTCTCTGCTGACATCTTGAAACCTGAACTCTTTGAATGGAA  750

seq1  GGCCTGGGGTCAAGTAGAGCAAGGAATTGAGGGAAACTATCTCAGGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGGTCAAGTAGAGCAAGGAATTGAGGGAAACTATCTCAGGCTGT  800

seq1  GTTACAGACTTGAGTTGAGGCTAGCTAGTGTAGTGGTGGCCTGAGGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGACTTGAGTTGAGGCTAGCTAGTGTAGTGGTGGCCTGAGGGAGG  850

seq1  GTATTTCTGATCCGTGCTACTATT-CCTTGGGCAAGTTT-GGAGCTAGGA  898
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  GTATTTCTGATCCGTGCTACTATTCCCTTGGGCAAGTTTGGGAGCTAGGA  900

seq1  AGCAGGATGTTGGTTTTTGTGAGTGTATCAAGTCTGAGAC-TTCTTATTC  947
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCA-GATGTTGGTTTTTGTGAGTGTATCAAGTCTGAGACTTTCTTATTC  949

seq1  TG-TTTCTATAAAGCTCTGATGCATGGC-GCACGTTTCATTCTGCCATGA  995
      || ||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  TGTTTTCTTTAAAGCTCTGATGCATGGCGGCACGTTTCATTCTGCCATGA  999

seq1  AGC-TGTGAATGGTTTTCCGGAATTATTAATTTACCAAGGTAGTGCTT-G  1043
      ||| |||| || |||||||||||||||||||||||  ||||||||||| |
seq2  AGCTTGTG-ATTGTTTTCCGGAATTATTAATTTAC--AGGTAGTGCTTGG  1046

seq1  GTGAGTTTCTATTGTTTTCAAGGTAGAGGACAGGCAATGAGACAA--TGA  1091
      ||||| |||||||| |||||| |||||| ||||||||||| ||||   ||
seq2  GTGAG-TTCTATTG-TTTCAA-GTAGAGTACAGGCAATGAAACAAATGGA  1093

seq1  GACAAT-GGTGACAT-CCACACCCTCAAGCACAGGATAAAGAAGATCAGA  1139
      |||||| |||||||| ||||  | ||||||   |||| | ||||||||||
seq2  GACAATGGGTGACATCCCACCTCTTCAAGCCATGGAT-AGGAAGATCAGA  1142

seq1  A  1140
      |
seq2  A  1143