BAC Information

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BAC

Clone NameB6Ng01-101G10
Chromosome17 (Build37)
Map Location 53,348,752 - 53,498,303
singlet/doubletdoublet
Overlap geneEG629036
Upstream geneLOC672987, EG328839, Kcnh8, LOC668506
Downstream geneLOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101G10.bB6Ng01-101G10.g
ACCDH910595DH910596
length1,054699
definitionDH910595|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G10, 5' end.DH910596|Mus musculus domesticus DNA, BAC clone: B6Ng01-101G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,348,752 - 53,349,780)(53,497,606 - 53,498,303)
sequence
gaattcaccaagtgattaaaagagtcatcaggccagagcactcatgattt
aattgtctctggaaacacccttgcaggcacacccagagttgtgctttata
gtctcctggacaataacgttgatagttaaaactagccatcacaacttcac
catgtgtcatttaaaagcctcctggatgccaagatttgggtactactcta
tggaaaaagaacagcaaacttggcaaatgctcaaaatcagctataggcaa
gacaagaaaaggactatacctttcatgagctggagatttataatagagat
aatgtttcaagatgacagatggttaaaggcacctcttgattcagagaaga
gagagtgcgtctctatgtggacacatggcttgcttcctggggaaaaagtg
gagagatggaagcacttgtgggcctcctggatgagtgtggtatttgatca
tctgcttggcgtctttctgcctgcatgcagccacccagtaatcagaggtc
ctgggccacatggttcacatggagactgttacccatcacctgctccgaca
ctactgctgggagtgttttctttctttaattaaatcccttgggtaaaagg
atctttccaatttgaaaaaaaaaaacgtttggaatgctctgcagaagtta
gcagattaaaagggggggggggcgccaggctagccaattatttgttaagg
gagtaggaatcagcagttattcgttttaaaaagatcatcatcaggatgta
aaacatccctactggtcattaggtattgttctcctttacaaagcctttga
agagagaatcaatgagcttcattgcagcacaaagacaagggtttctcaga
ctgtcacattgaaagaagctgacattcattagtgcgagtctgagcttttc
catattatcaaagtcactttggagctctgccttacagcccttcactagtt
gcctgactcctttacattataactaatggaaatcccagaaataaagatta
tggactataattattcctctgcatctactttcttctagaaaataatcatg
gggt
gaattcaacatcaataaaagaaaaaattattggtaatccctttatgatgt
tattgagagaaacccatcatgacttaatggttgcctgtgccaaaaatgtt
taacttgagttaaatactttaagcagtattaaaaattaaaaatattaaat
gtttgtgtatgtgtgtgtgtgtgtgtgtgtatgtatggaattacacctat
aatagcatgtccatggaagtcagagcacaacgttgtggagtcagtactct
ccttctacctttgcttgggttccaggaattgcattaggttgccatgatgc
atgacagcacctttacttgccatctcattggtctcctgatttctctttta
ctttccccctcacctgtcatttcccatccataatgatgctaattaccccc
taaatagcacctaggttatttcacttatttaactgaaatacattgtgctg
atgatataaatgtgcttccattttaggctttttacaactcgaaggctggg
ccttgtgtattctgagaacatttaaaaattccaatataaatacataggtt
gataaagtaaataagtatattaaaatagaattattaaacctcaagaatat
tgtgatacaacatacatggtttaatggtacattaaaaactatattgtatg
tgttatattttaactgtcatagttgaaaagtaatgagcataaattagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53348752_53349780
seq2: B6Ng01-101G10.b_40_1061

seq1  GAATTCACCAAGTGATTAAAAGAGTCATCAGGCCAGAGCACTCATGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGTGATTAAAAGAGTCATCAGGCCAGAGCACTCATGATTT  50

seq1  AATTGTCTCTGGAAACACCCTTGCAGGCACACCCAGAGTTGTGCTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTCTGGAAACACCCTTGCAGGCACACCCAGAGTTGTGCTTTATA  100

seq1  GTCTCCTGGACAATAACGTTGATAGTTAAAACTAGCCATCACAACTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGACAATAACGTTGATAGTTAAAACTAGCCATCACAACTTCAC  150

seq1  CATGTGTCATTTAAAAGCCTCCTGGATGCCAAGATTTGGGTACTACTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCATTTAAAAGCCTCCTGGATGCCAAGATTTGGGTACTACTCTA  200

seq1  TGGAAAAAGAACAGCAAACTTGGCAAATGCTCAAAATCAGCTATAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAGAACAGCAAACTTGGCAAATGCTCAAAATCAGCTATAGGCAA  250

seq1  GACAAGAAAAGGACTATACCTTTCATGAGCTGGAGATTTATAATAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAAAGGACTATACCTTTCATGAGCTGGAGATTTATAATAGAGAT  300

seq1  AATGTTTCAAGATGACAGATGGTTAAAGGCACCTCTTGATTCAGAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCAAGATGACAGATGGTTAAAGGCACCTCTTGATTCAGAGAAGA  350

seq1  GAGAGTGCGTCTCTATGTGGACACATGGCTTGCTTCCTGGGGAAAAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCGTCTCTATGTGGACACATGGCTTGCTTCCTGGGGAAAAAGTG  400

seq1  GAGAGATGGAAGCACTTGTGGGCCTCCTGGATGAGTGTGGTATTTGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGAAGCACTTGTGGGCCTCCTGGATGAGTGTGGTATTTGATCA  450

seq1  TCTGCTTGGCGTCTTTCTGCCTGCATGCAGCCACCCAGTAATCAGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGGCGTCTTTCTGCCTGCATGCAGCCACCCAGTAATCAGAGGTC  500

seq1  CTGGGCCACATGGTTCACATGGAGACTGTTACCCATCACCTGCTCCGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCACATGGTTCACATGGAGACTGTTACCCATCACCTGCTCCGACA  550

seq1  CTACTGCTGGGAGTGTTTTCTTTCTTTAATTAAATCCCTTGGGTAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTGGGAGTGTTTTCTTTCTTTAATTAAATCCCTTGGGTAAAAGG  600

seq1  ATCTTTCCAATTTGAAAAAAAAAAACGTTTGGAATGCTCTGCAGAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCAATTTGAAAAAAAAAAACGTTTGGAATGCTCTGCAGAAGTTA  650

seq1  GCAGATTAAAAGGGGGGGGGGGCGCCAGGCTAGCCAATTATTTGTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAAAAGGGGGGGGGGGCGCCAGGCTAGCCAATTATTTGTTAAGG  700

seq1  GAGTAGGAATCAGCAGTTATTCGTTTT-AAAAGATCATCAATCAGGATGT  749
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GAGTAGGAATCAGCAGTTATTCGTTTTAAAAAGATCATC-ATCAGGATGT  749

seq1  AAAACATCCCTACTGGTCA-TAGGTATTGTTCTCC-TTACAAAGCCTTTG  797
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AAAACATCCCTACTGGTCATTAGGTATTGTTCTCCTTTACAAAGCCTTTG  799

seq1  AAGAGAGAATCAATGAGCTTCATTGCAGCACAAAGACAAGGGTTTCTCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAATCAATGAGCTTCATTGCAGCACAAAGACAAGGGTTTCTCAG  849

seq1  ACTGTCACAATGAAAGAAGCTGACATTCATTAGTGCGAGTCTGAGCATTT  897
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  ACTGTCACATTGAAAGAAGCTGACATTCATTAGTGCGAGTCTGAGC-TTT  898

seq1  TCCATA-TATCAAAGTCACTCTGGAGGCTCTGTCTTTACAGCCCTTCACT  946
      |||||| ||||||||||||| |||| |||||| | |||||||||||||| 
seq2  TCCATATTATCAAAGTCACTTTGGA-GCTCTG-CCTTACAGCCCTTCAC-  945

seq1  TAGTTGCCTGACTCCTTTACCATTATTAACTAAATGGAAATTCCACAGAA  996
      ||||||||||||||||||| ||||| ||||| |||||||||  | |||||
seq2  TAGTTGCCTGACTCCTTTA-CATTA-TAACT-AATGGAAAT--CCCAGAA  990

seq1  ATAAAGATTATGTGACTATAATTTATTCTCTGC  1029
      |||||||||||| ||||||||||  | ||||||
seq2  ATAAAGATTATG-GACTATAATTATTCCTCTGC  1022

seq1: chr17_53497606_53498303
seq2: B6Ng01-101G10.g_69_767 (reverse)

seq1  TGCTAATTTATGCTCATTAC-TTTCAACTATGACAGTTTAAATCTACCAC  49
      |||||||||||||||||||| ||||||||||||||||| |||| || |||
seq2  TGCTAATTTATGCTCATTACTTTTCAACTATGACAGTTAAAATATAACAC  50

seq1  ATACAATATCG-TTTTAATGTACCATTAAAACCATGTATGTTGTATCACA  98
      ||||||||| | ||||||||||||||| ||||||||||||||||||||||
seq2  ATACAATATAGTTTTTAATGTACCATT-AAACCATGTATGTTGTATCACA  99

seq1  ATATTCTTGAGGTTTAATAATTCTATTTTAATATACTTATTTACTTTATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGAGGTTTAATAATTCTATTTTAATATACTTATTTACTTTATC  149

seq1  AACCTATGTATTTATATTGGAATTTTTAAATGTTCTCAGAATACACAAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGTATTTATATTGGAATTTTTAAATGTTCTCAGAATACACAAGG  199

seq1  CCCAGCCTTCGAGTTGTAAAAAGCCTAAAATGGAAGCACATTTATATCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTTCGAGTTGTAAAAAGCCTAAAATGGAAGCACATTTATATCAT  249

seq1  CAGCACAATGTATTTCAGTTAAATAAGTGAAATAACCTAGGTGCTATTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAATGTATTTCAGTTAAATAAGTGAAATAACCTAGGTGCTATTTA  299

seq1  GGGGGTAATTAGCATCATTATGGATGGGAAATGACAGGTGAGGGGGAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAATTAGCATCATTATGGATGGGAAATGACAGGTGAGGGGGAAAG  349

seq1  TAAAAGAGAAATCAGGAGACCAATGAGATGGCAAGTAAAGGTGCTGTCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAAATCAGGAGACCAATGAGATGGCAAGTAAAGGTGCTGTCAT  399

seq1  GCATCATGGCAACCTAATGCAATTCCTGGAACCCAAGCAAAGGTAGAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGGCAACCTAATGCAATTCCTGGAACCCAAGCAAAGGTAGAAGG  449

seq1  AGAGTACTGACTCCACAACGTTGTGCTCTGACTTCCATGGACATGCTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTGACTCCACAACGTTGTGCTCTGACTTCCATGGACATGCTATT  499

seq1  ATAGGTGTAATTCCATACATACACACACACACACACACACATACACAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTAATTCCATACATACACACACACACACACACACATACACAAAC  549

seq1  ATTTAATATTTTTAATTTTTAATACTGCTTAAAGTATTTAACTCAAGTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTTTTAATTTTTAATACTGCTTAAAGTATTTAACTCAAGTTA  599

seq1  AACATTTTTGGCACAGGCAACCATTAAGTCATGATGGGTTTCTCTCAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTGGCACAGGCAACCATTAAGTCATGATGGGTTTCTCTCAATA  649

seq1  ACATCATAAAGGGATTACCAATAATTTTTTCTTTTATTGATGTTGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATAAAGGGATTACCAATAATTTTTTCTTTTATTGATGTTGAATTC  699