BAC Information

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BAC

Clone NameB6Ng01-102E02
Chromosome17 (Build37)
Map Location 35,649,607 - 35,777,342
singlet/doubletdoublet
Overlap geneTcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1
Upstream geneLOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1
Downstream geneEG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102E02.bB6Ng01-102E02.g
ACCDH911199DH911200
length1,1481,100
definitionDH911199|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E02, 5' end.DH911200|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,649,607 - 35,650,755)(35,776,232 - 35,777,342)
sequence
gaattccatctccaggcctcaccaaatctaatctccccatcctttgaaaa
gcagacttagattcaacgcaagtggatgaaacagtttattctttatttgg
gaataaagactaagctctgaaaagctagtcccagagactcagctggtggt
gatactagctagcggtggcatgaggatgccttgggaatgtgctctgggtc
cttcagggtgctttagccgatgccattcaagaacatgagtagggttaggg
tattgtggcagagcacttgcctggtatatgctggcttcagcaaaataaaa
ccataccttctaggaatggtttctgggaccggtgctctaactgcaggtat
cctggcatccatggaggcaaggctttattccttgtgactgggcttgtagc
tcactggaaacttggaggctgcaacatctttggcaggaaaccatcttttc
tgtcacttcatttgcaagcattctccagccttgagtcagtctttagcaat
ggacctttccctgtggtcattccctttggagaaagacattcctcaaagtc
catggtaactttgaatgagtgttttgcatgtacacatgcgtgagtgtgca
tgcgctctcacacacgcacgcacatgcacacgcgtgcacacacacacaca
cacacacacacacacacacacacacacacactgcttcagcccttaggagc
cattcttctattattatgtttgagtgctctgcctgaatgtgcacctgcag
gccagaagagggcatcagatccctttttagagatggtcacaagccatcat
gttgttgctggaaattggagacttctgggaagagcagccagtgtaccctt
aattgctgagccatcttactgcccaagatacattcttacactgtgcctga
ccctgagccacatctgtgtcctgactgcaaagtcaagatgccatatggca
tcctggatgctatagccagtgcaggccagagggtaccagatggtcacagg
catcacactacccaggctctgcttctctagcaaaaagaagctggacagac
ttccttaaggagtgagtgtttcctgagaaaccctttgagtacttgcttct
ggggtaactggtagcgaacagtaggctaagacttggatatgaacttgg
gaattcaagtgcttgacttactgcattagctttctgtaactgtaaccaag
tacctgtgattatcgaattctgaagatgaaagttttgtttgaggtcatag
tttttgatgagtgtatccatgactgttagccctggtgcagcccattcaga
taggaatgtatgggcgggcaaagccagtcaccgattgattgatcaagaaa
aaggcagagaaaggagctggcctcctaatggtcccttcaagggtatgctc
cagtaacccaacttccacccactgaaggttccatcacggtgccaagttgg
ggattaagcatttaacccctttgggggcagtctagatctactccggcacc
tggacaatggtgctcccaacaactgagaggaaacttctgtcaagggaaga
ggagaatggagtgacagggagccttgcccctggcagctgaaaactcagtt
tccctctggggcaccggcttctctattctcctcaagcccttgtcagatct
tcccatggttctctctaggcctgaatacccagccctgttctcatcagtgg
aaaggtgggtggatctcagtttcccaccactaggaatgggtccagattct
aggtgccaccttgagctgacagtgttgacagtttcagttacaagtctact
tcctggcaacctcccagttctcattcttcaggccagattcggaaacacat
cctctgttcctatctaggtgttttgttttgtttttttttctttcactgaa
ttaaggcccgtatctgtccactgataagggtgttttccttcacaccctgt
ccctaaacagaacccctcccacaatccagctgcctggctcaccaccgtca
ggacctggcaaggagagacccttttccgtcaaagaaatcaccgtcatcta
ttcccagacatatctacaaagaagggacccatggggtagacaacacaggc
tgaactactgtattcacctccctccactcagacaaactctgtcacccacc
agatgggagtttcgtcttttctccctaacatctctgtcttctctcttcct
acaccctctgcttgagtcttggctaggaatgttctctgtctccacatcac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35649607_35650755
seq2: B6Ng01-102E02.b_44_1191

seq1  GAATTCCATCTCCAGGCCTCACCAAATCTAATCTCCCCATCCTTTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCAGGCCTCACCAAATCTAATCTCCCCATCCTTTGAAAA  50

seq1  GCAGACTTAGATTCAACGCAAGTGGATGAAACAGTTTATTCTTTATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTAGATTCAACGCAAGTGGATGAAACAGTTTATTCTTTATTTGG  100

seq1  GAATAAAGACTAAGCTCTGAAAAGCTAGTCCCAGAGACTCAGCTGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGACTAAGCTCTGAAAAGCTAGTCCCAGAGACTCAGCTGGTGGT  150

seq1  GATACTAGCTAGCGGTGGCATGAGGATGCCTTGGGAATGTGCTCTGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAGCTAGCGGTGGCATGAGGATGCCTTGGGAATGTGCTCTGGGTC  200

seq1  CTTCAGGGTGCTTTAGCCGATGCCATTCAAGAACATGAGTAGGGTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGTGCTTTAGCCGATGCCATTCAAGAACATGAGTAGGGTTAGGG  250

seq1  TATTGTGGCAGAGCACTTGCCTGGTATATGCTGGCTTCAGCAAAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGGCAGAGCACTTGCCTGGTATATGCTGGCTTCAGCAAAATAAAA  300

seq1  CCATACCTTCTAGGAATGGTTTCTGGGACCGGTGCTCTAACTGCAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTTCTAGGAATGGTTTCTGGGACCGGTGCTCTAACTGCAGGTAT  350

seq1  CCTGGCATCCATGGAGGCAAGGCTTTATTCCTTGTGACTGGGCTTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATCCATGGAGGCAAGGCTTTATTCCTTGTGACTGGGCTTGTAGC  400

seq1  TCACTGGAAACTTGGAGGCTGCAACATCTTTGGCAGGAAACCATCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAAACTTGGAGGCTGCAACATCTTTGGCAGGAAACCATCTTTTC  450

seq1  TGTCACTTCATTTGCAAGCATTCTCCAGCCTTGAGTCAGTCTTTAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCATTTGCAAGCATTCTCCAGCCTTGAGTCAGTCTTTAGCAAT  500

seq1  GGACCTTTCCCTGTGGTCATTCCCTTTGGAGAAAGACATTCCTCAAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTCCCTGTGGTCATTCCCTTTGGAGAAAGACATTCCTCAAAGTC  550

seq1  CATGGTAACTTTGAATGAGTGTTTTGCATGTACACATGCGTGAGTGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAACTTTGAATGAGTGTTTTGCATGTACACATGCGTGAGTGTGCA  600

seq1  TGCGCTCTCACACACGCACGCACATGCACACGCGTGCACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTCTCACACACGCACGCACATGCACACGCGTGCACACACACACACA  650

seq1  CACACACACACACACACACACACACACACACTGCTTCAGCCCTTAGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACTGCTTCAGCCCTTAGGAGC  700

seq1  CATTCTTCTATTATTATGTTTGAGTGCTCTGCCTGAATGTGCACCTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTATTATTATGTTTGAGTGCTCTGCCTGAATGTGCACCTGCAG  750

seq1  GCCAGAAGAGGGCATCAGATCCC-TTTTAGAGATGGTCACAAGCCATCAT  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCAGAAGAGGGCATCAGATCCCTTTTTAGAGATGGTCACAAGCCATCAT  800

seq1  GTTGTTGCTGGAAATTGG-GACTTCT-GGAAGAGCAGCCAGTGTACCCTT  847
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GTTGTTGCTGGAAATTGGAGACTTCTGGGAAGAGCAGCCAGTGTACCCTT  850

seq1  AATTGCTGAGCCATCTTACTGCCCAAGATACATTCTTACACTGTGCCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGAGCCATCTTACTGCCCAAGATACATTCTTACACTGTGCCTGA  900

seq1  CCCTGAGCCACATCTGTGTCCTGACTGCAAAGTCAAGATGCCATTATGGC  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGAGCCACATCTGTGTCCTGACTGCAAAGTCAAGATGCCA-TATGGC  949

seq1  ATCCTGGATGCTATAGCCAGTGCAGGCCAGAGGGTACCAGAT-GTCACAG  996
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCCTGGATGCTATAGCCAGTGCAGGCCAGAGGGTACCAGATGGTCACAG  999

seq1  CCATCACACCAACCCAGGCTCTGC-TCTCTAGCAAAAAGAAGCTGGACAG  1045
       ||||||| | ||||||||||||| |||||||||||||||||||||||| 
seq2  GCATCACA-CTACCCAGGCTCTGCTTCTCTAGCAAAAAGAAGCTGGACA-  1047

seq1  GACTCCCTAAGGGAGTGAGTG-TTCCTGAGAAACCCTTTGAGTAACTTGC  1094
      |||| ||| | |||||||||| ||||||||||||||||||||| ||||||
seq2  GACTTCCTTAAGGAGTGAGTGTTTCCTGAGAAACCCTTTGAGT-ACTTGC  1096

seq1  CTCT-GGGTAACTGGTAGCCAGAACAGGAGGCTAAGACTGGGATATAGGA  1143
       ||| ||||||||||||||  |||||| ||||||||||| ||||||  ||
seq2  TTCTGGGGTAACTGGTAGC--GAACAGTAGGCTAAGACTTGGATAT--GA  1142

seq1  ACTTGG  1149
      ||||||
seq2  ACTTGG  1148

seq1: chr17_35776232_35777342
seq2: B6Ng01-102E02.g_67_1166 (reverse)

seq1  GTGATGTGAGAAACAGAGACAAACTCCTAG-CAGAACTCAAGCAGAGAGG  49
      |||||||| || ||||||| | | |||||| ||  ||||||||  |||||
seq2  GTGATGTG-GAGACAGAGA-ACATTCCTAGCCAAGACTCAAGC--AGAGG  46

seq1  TTGTGAGAAGAGGAGAAGACAGAAGATGGTTAGGGAG-AAAGACGGAAAC  98
       |||  ||||| |||||||||| |||| ||||||||| |||||| |||||
seq2  GTGTAGGAAGA-GAGAAGACAG-AGAT-GTTAGGGAGAAAAGAC-GAAAC  92

seq1  TTCCATCCTGGTGGGTGACAGAGTTTGGTCTGAGTGGAGGGAGGTGAATA  148
      | |||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCCAT-CTGGTGGGTGACAGAGTTT-GTCTGAGTGGAGGGAGGTGAATA  140

seq1  CAGTAGTTCAGCCTGTGTTGTCTACCCCATTGGGTCCCCTTCTTTGTAGA  198
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  CAGTAGTTCAGCCTGTGTTGTCTACCCCA-TGGGT-CCCTTCTTTGTAGA  188

seq1  TATGTCTGGGAATAGATGACGGTGATTTCTTTTGACGGAAAAGGGTCTCT  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATGTCTGGGAATAGATGACGGTGATTTC-TTTGACGGAAAAGGGTCTCT  237

seq1  CCTTGCCAGGTCCTGACGGTGGTGAGCCAGGCAGCTGGATTGTGGGAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAGGTCCTGACGGTGGTGAGCCAGGCAGCTGGATTGTGGGAGGG  287

seq1  GTTCTGTTTAGGGACAGGGTGTGAAGGAAAACACCCTTATCAGTGGACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTTAGGGACAGGGTGTGAAGGAAAACACCCTTATCAGTGGACAG  337

seq1  ATACGGGCCTTAATTCAGTGAAAGAAAAAAAAACAAAACAAAACACCTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGGCCTTAATTCAGTGAAAGAAAAAAAAACAAAACAAAACACCTAG  387

seq1  ATAGGAACAGAGGATGTGTTTCCGAATCTGGCCTGAAGAATGAGAACTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAACAGAGGATGTGTTTCCGAATCTGGCCTGAAGAATGAGAACTGG  437

seq1  GAGGTTGCCAGGAAGTAGACTTGTAACTGAAACTGTCAACACTGTCAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGCCAGGAAGTAGACTTGTAACTGAAACTGTCAACACTGTCAGCT  487

seq1  CAAGGTGGCACCTAGAATCTGGACCCATTCCTAGTGGTGGGAAACTGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGCACCTAGAATCTGGACCCATTCCTAGTGGTGGGAAACTGAGA  537

seq1  TCCACCCACCTTTCCACTGATGAGAACAGGGCTGGGTATTCAGGCCTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCACCTTTCCACTGATGAGAACAGGGCTGGGTATTCAGGCCTAGA  587

seq1  GAGAACCATGGGAAGATCTGACAAGGGCTTGAGGAGAATAGAGAAGCCGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCATGGGAAGATCTGACAAGGGCTTGAGGAGAATAGAGAAGCCGG  637

seq1  TGCCCCAGAGGGAAACTGAGTTTTCAGCTGCCAGGGGCAAGGCTCCCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGAGGGAAACTGAGTTTTCAGCTGCCAGGGGCAAGGCTCCCTGT  687

seq1  CACTCCATTCTCCTCTTCCCTTGACAGAAGTTTCCTCTCAGTTGTTGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATTCTCCTCTTCCCTTGACAGAAGTTTCCTCTCAGTTGTTGGGA  737

seq1  GCACCATTGTCCAGGTGCCGGAGTAGATCTAGACTGCCCCCAAAGGGGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTGTCCAGGTGCCGGAGTAGATCTAGACTGCCCCCAAAGGGGTT  787

seq1  AAATGCTTAATCCCCAACTTGGCACCGTGATGGAACCTTCAGTGGGTGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTAATCCCCAACTTGGCACCGTGATGGAACCTTCAGTGGGTGGA  837

seq1  AGTTGGGTTACTGGAGCATACCCTTGAAGGGACCATTAGGAGGCCAGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTTACTGGAGCATACCCTTGAAGGGACCATTAGGAGGCCAGCTC  887

seq1  CTTTCTCTGCCTTTTTCTTGATCAATCAATCGGTGACTGGCTTTGCCCGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCCTTTTTCTTGATCAATCAATCGGTGACTGGCTTTGCCCGC  937

seq1  CCATACATTCCTATCTGAATGGGCTGCACCAGGGCTAACAGTCATGGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACATTCCTATCTGAATGGGCTGCACCAGGGCTAACAGTCATGGATA  987

seq1  CACTCATCAAAAACTATGACCTCAAACAAAACTTTCATCTTCAGAATTCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATCAAAAACTATGACCTCAAACAAAACTTTCATCTTCAGAATTCG  1037

seq1  ATAATCACAGGTACTTGGTTACAGTTACAGAAAGCTAATGCAGTAAGTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACAGGTACTTGGTTACAGTTACAGAAAGCTAATGCAGTAAGTCA  1087

seq1  AGCACTTGAATTC  1111
      |||||||||||||
seq2  AGCACTTGAATTC  1100