BAC Information

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BAC

Clone NameB6Ng01-102H01
Chromosome17 (Build37)
Map Location 56,290,734 - 56,406,099
singlet/doubletdoublet
Overlap geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b
Downstream geneTicam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102H01.bB6Ng01-102H01.g
ACCDH911333DH911334
length1,088873
definitionDH911333|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H01, 5' end.DH911334|Mus musculus domesticus DNA, BAC clone: B6Ng01-102H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,290,734 - 56,291,837)(56,405,229 - 56,406,099)
sequence
gaattctagaaacaggagatggggcaacccatgctagttaagtttgtgtg
tgtgtgtagtggtagtggggaattgccaacttgatataagccaaagttgt
ttgggaagagggaacctcaactgagtaaatacctccatcagattggactg
tgggacattttcttagttgatgactgttgggagatcaccagccctctgtg
ggtggagccatcctgggctggtggtcccaagttctataagaagcaggctg
agcaagtcatgaggagcaaaccagtacatatctctccatagcctctgcat
cagctcctgcctccaagcttctgacatgacttccatcaatgatggagtgg
gaccagaggattgcaggggaaaggaagccctttcctgcccaagctggttg
tgtttacagtgctcaccctaacaacagaaagctttcttgtcagtggtgta
gacaaccagtggagacacgctgctcttcaaatttagctgttacaaatgga
agtcgagtcatggtggtggtcactgcagactgatttgggactgataaaag
aattttaaagaaacaagaagttccctaaatagtgtgcacactctgagggt
caggctgctaaatattcttttattagataatagttaaggtcattatcctg
tgatggttattatcagttcctgatggtttggggcaaagatcaagtggctg
ctgaacctggcagctctgatgtgaaagcaggcagtggagagttccaagcc
caaggtgtgttcaggcagaaggagataattttggtttttgtgtgtttgtg
catgtgtggggggcatgtaggtggcatttgtgcatgcgtgatgcatgtac
agttggtattttgtgcatgtgtgtgtgcacacgtgtaagtagaatccaaa
agtccttgccaggtgtgctgctcaactcatagtcacattagccaccttat
ttttttttagattttgttttgtttttgtttttgagacaggtttctctgtg
tagccctggctgcctggactcactctgtagacagcctgcctcgaactaga
aatcgctgcctctgcttccaagtgctgggatagacatg
gaattctggccctcaacattgctttaattagaactgaagagagtatgatg
caaaaagccagacttccaaggaccataaacatgcaaatttttggactttt
ctaggctaagtggcaggaggggatgagtcactcagcccacttgttatttt
agtctcggagttagaccttgtcagagctcttctgtgcatgacgaacctga
agtgaaaccccagcatcacagttctgcagttccctgggggcggggatgta
aatgaagttctctaacagtgtgagactgtccaggtttctgggatgcagtg
gtgagagggagggtgctgggctctcagctatgggtgttctggggtgcaga
agggtaaaaggagacatcagtaaaggaagcaaggggactttgtgtgtgag
tgtgtggtgagggacagcacagctcaagcaaaggccctggggctggacag
aggctcacatgttaggggagccatgttaagaggcagaggacagcctgtca
actcatctccactggatttggggggcctgacagatgactcagcacttgcc
ctggagcctcatgactcaagtttgctcaccaggacccacatggtggaaga
ggagaatcgactcctatgagctgtcctctgacctccacacagttgcacat
gcacacacccacaataaatcaggaaatatagggccggagagacggctcag
tggttaagagcactggttgtttcccagaggtcctgagttcaattcccagc
aaccacagggtggctcacaaccatctataatggtgtttgataccttcttc
tggtatgcagacattcaggtagacagaacactcattttacataaatcttt
aaaaaaaaaaaaaaagccggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56290734_56291837
seq2: B6Ng01-102H01.b_42_1129

seq1  GAATTCTAGAAACAGGAGATGGGGCAACCCATGCTAGTTAAGTTTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAACAGGAGATGGGGCAACCCATGCTAGTTAAGTTTGTGTG  50

seq1  TGTGTGTAGTGGTAGTGGGGAATTGCCAACTTGATATAAGCCAAAGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAGTGGTAGTGGGGAATTGCCAACTTGATATAAGCCAAAGTTGT  100

seq1  TTGGGAAGAGGGAACCTCAACTGAGTAAATACCTCCATCAGATTGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGAGGGAACCTCAACTGAGTAAATACCTCCATCAGATTGGACTG  150

seq1  TGGGACATTTTCTTAGTTGATGACTGTTGGGAGATCACCAGCCCTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATTTTCTTAGTTGATGACTGTTGGGAGATCACCAGCCCTCTGTG  200

seq1  GGTGGAGCCATCCTGGGCTGGTGGTCCCAAGTTCTATAAGAAGCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCCATCCTGGGCTGGTGGTCCCAAGTTCTATAAGAAGCAGGCTG  250

seq1  AGCAAGTCATGAGGAGCAAACCAGTACATATCTCTCCATAGCCTCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCATGAGGAGCAAACCAGTACATATCTCTCCATAGCCTCTGCAT  300

seq1  CAGCTCCTGCCTCCAAGCTTCTGACATGACTTCCATCAATGATGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGCCTCCAAGCTTCTGACATGACTTCCATCAATGATGGAGTGG  350

seq1  GACCAGAGGATTGCAGGGGAAAGGAAGCCCTTTCCTGCCCAAGCTGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGGATTGCAGGGGAAAGGAAGCCCTTTCCTGCCCAAGCTGGTTG  400

seq1  TGTTTACAGTGCTCACCCTAACAACAGAAAGCTTTCTTGTCAGTGGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAGTGCTCACCCTAACAACAGAAAGCTTTCTTGTCAGTGGTGTA  450

seq1  GACAACCAGTGGAGACACGCTGCTCTTCAAATTTAGCTGTTACAAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCAGTGGAGACACGCTGCTCTTCAAATTTAGCTGTTACAAATGGA  500

seq1  AGTCGAGTCATGGTGGTGGTCACTGCAGACTGATTTGGGACTGATAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGTCATGGTGGTGGTCACTGCAGACTGATTTGGGACTGATAAAAG  550

seq1  AATTTTAAAGAAACAAGAAGTTCCCTAAATAGTGTGCACACTCTGAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGAAACAAGAAGTTCCCTAAATAGTGTGCACACTCTGAGGGT  600

seq1  CAGGCTGCTAAATATTCTTTTATTAGATAATAGTTAAGGTCATTATCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTAAATATTCTTTTATTAGATAATAGTTAAGGTCATTATCCTG  650

seq1  TGATGGTTATTATCAGTTCCTGATGGTTTGGGGCAAAGATCAAGTGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTATTATCAGTTCCTGATGGTTTGGGGCAAAGATCAAGTGGCTG  700

seq1  CTGAACCTGGCAGCTCTGATGTGAAAGCAGGCAGTGGAGAGTTCCAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGGCAGCTCTGATGTGAAAGCAGGCAGTGGAGAGTTCCAAGCC  750

seq1  CAAGGTGTGTTCAGGCAGAAGGAGATAATTTTGGTTTTTGTGTGTTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGTGTTCAGGCAGAAGGAGATAATTTTGGTTTTTGTGTGTTTGTG  800

seq1  CATGTGTGGGGGGCATGTAGGTGGCATTTGTGCATGCGTGATGCATGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGGGGGGCATGTAGGTGGCATTTGTGCATGCGTGATGCATGTAC  850

seq1  AGTTGGTA-TTTGTGCATGTGTGTGTGCACACGTGTAAGTAGAATCCAAA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTATTTTGTGCATGTGTGTGTGCACACGTGTAAGTAGAATCCAAA  900

seq1  AGTCCTTGCCAGGTGTGCTGCTCAACTCATAGTCACATTAGCCACCTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTCCTTGCCAGGTGTGCTGCTCAACTCATAGTCACATTAGCCACCTTA-  949

seq1  TTTTTTTTTAGATTTTTGTTTTTGTTTTTGTTTTTTTGAGACAGGGTTTC  999
      ||||||||||||||||   |||||||||||  ||||||||||| ||||||
seq2  TTTTTTTTTAGATTTT--GTTTTGTTTTTG--TTTTTGAGACA-GGTTTC  994

seq1  TCTGTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCC  1049
      |||||||||||||||||| ||||| |||||||||||||| ||| || |||
seq2  TCTGTGTAGCCCTGGCTG-CCTGG-ACTCACTCTGTAGA-CAGCCT-GCC  1040

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAG  1099
      ||||||| |||||||   ||||||||| || ||||||||||||||   ||
seq2  TCGAACT-AGAAATC--GCTGCCTCTG-CTTCCAAGTGCTGGGAT---AG  1083

seq1  ACATG  1104
      |||||
seq2  ACATG  1088

seq1: chr17_56405229_56406099
seq2: B6Ng01-102H01.g_69_941 (reverse)

seq1  ACCCCGGCTTTTTTTTTTTTTTT-AAGATTTATGT-ATATGAGTGTTCTG  48
      ||||||||||||||||||||||| ||||||||||| | ||||||||||||
seq2  ACCCCGGCTTTTTTTTTTTTTTTAAAGATTTATGTAAAATGAGTGTTCTG  50

seq1  TCTACCTGAATGTCTGCATACCAGAAGAAGGTATCAAACACCATTATAGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGAATGTCTGCATACCAGAAGAAGGTATCAAACACCATTATAGA  100

seq1  TGGTTGTGAGCCACCCTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGCCACCCTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGG  150

seq1  GAAACAACCAGTGCTCTTAACCACTGAGCCGTCTCTCCGGCCCTATATTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACCAGTGCTCTTAACCACTGAGCCGTCTCTCCGGCCCTATATTT  200

seq1  CCTGATTTATTGTGGGTGTGTGCATGTGCAACTGTGTGGAGGTCAGAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTATTGTGGGTGTGTGCATGTGCAACTGTGTGGAGGTCAGAGGA  250

seq1  CAGCTCATAGGAGTCGATTCTCCTCTTCCACCATGTGGGTCCTGGTGAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATAGGAGTCGATTCTCCTCTTCCACCATGTGGGTCCTGGTGAGC  300

seq1  AAACTTGAGTCATGAGGCTCCAGGGCAAGTGCTGAGTCATCTGTCAGGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGTCATGAGGCTCCAGGGCAAGTGCTGAGTCATCTGTCAGGCC  350

seq1  CCCCAAATCCAGTGGAGATGAGTTGACAGGCTGTCCTCTGCCTCTTAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATCCAGTGGAGATGAGTTGACAGGCTGTCCTCTGCCTCTTAACA  400

seq1  TGGCTCCCCTAACATGTGAGCCTCTGTCCAGCCCCAGGGCCTTTGCTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCCTAACATGTGAGCCTCTGTCCAGCCCCAGGGCCTTTGCTTGA  450

seq1  GCTGTGCTGTCCCTCACCACACACTCACACACAAAGTCCCCTTGCTTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTGTCCCTCACCACACACTCACACACAAAGTCCCCTTGCTTCCT  500

seq1  TTACTGATGTCTCCTTTTACCCTTCTGCACCCCAGAACACCCATAGCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGATGTCTCCTTTTACCCTTCTGCACCCCAGAACACCCATAGCTGA  550

seq1  GAGCCCAGCACCCTCCCTCTCACCACTGCATCCCAGAAACCTGGACAGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGCACCCTCCCTCTCACCACTGCATCCCAGAAACCTGGACAGTC  600

seq1  TCACACTGTTAGAGAACTTCATTTACATCCCCGCCCCCAGGGAACTGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGTTAGAGAACTTCATTTACATCCCCGCCCCCAGGGAACTGCAG  650

seq1  AACTGTGATGCTGGGGTTTCACTTCAGGTTCGTCATGCACAGAAGAGCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGATGCTGGGGTTTCACTTCAGGTTCGTCATGCACAGAAGAGCTC  700

seq1  TGACAAGGTCTAACTCCGAGACTAAAATAACAAGTGGGCTGAGTGACTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTCTAACTCCGAGACTAAAATAACAAGTGGGCTGAGTGACTCA  750

seq1  TCCCCTCCTGCCACTTAGCCTAGAAAAGTCCAAAAATTTGCATGTTTATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCTGCCACTTAGCCTAGAAAAGTCCAAAAATTTGCATGTTTATG  800

seq1  GTCCTTGGAAGTCTGGCTTTTTGCATCATACTCTCTTCAGTTCTAATTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGAAGTCTGGCTTTTTGCATCATACTCTCTTCAGTTCTAATTAA  850

seq1  AGCAATGTTGAGGGCCAGAATTC  871
      |||||||||||||||||||||||
seq2  AGCAATGTTGAGGGCCAGAATTC  873