BAC Information

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BAC

Clone NameB6Ng01-104O03
Chromosome17 (Build37)
Map Location 84,678,742 - 84,864,688
singlet/doubletdoublet
Overlap geneThada
Upstream geneEG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104O03.bB6Ng01-104O03.g
ACCDH913056DH913057
length1,1541,039
definitionDH913056|Mus musculus domesticus DNA, BAC clone: B6Ng01-104O03, 5' end.DH913057|Mus musculus domesticus DNA, BAC clone: B6Ng01-104O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,863,534 - 84,864,688)(84,678,742 - 84,679,801)
sequence
gaattccttgatttagttcatgaaattttaataaagcatttactacatgc
atgaacgactaaggagttaagaacgggaacactgaacacaactattcagt
tcattgcaacctttatggagcttagtgctaggaaaaacaggcaatagaca
ggtgtgccagttagtgtaatcttaggtagtaatacatgctgtgaaagaaa
tctgaaatgaatggcagaggaagctggggccagattgttttcaggccata
cacccaaatttggatgtaactaatgcattttatttagtgcaagggaaaac
ctttgggaagtttataagcaagtgcatggttagattgctttgattcttca
gagacaagtagggacaacaaggaagctatgtcaggagtttaagtgacgca
tgctgagtcgttttctgcctgggagggtctgcaggtagaccattcctcag
tggccacggaggtctgcctttgacttaagctggaatctgtatcctcaaag
ctttcgtagaatgtctaattattaaatgggacaaaagaaatctctccttc
aaagcagcacctcatttaaggacaacataatgaaaccccccattttcaag
gtagtaaaaaaaccttaaacaaaaagcccacagattttgtttggcaaacc
agatctcctcagctcagaaattgtcactcactagtggctttgttgggaga
tatctattggtcatcttaatttgttggtagtaagataatcctggcatctc
atggggtgcaggctggggaggctctaagcaccctacggtgcacagcccac
catcctcagtaagagacacgtggcctcaaatgtcactgttgttgcaggag
aaactctccactggaccactgcctcaagttctcccttcttgcagagcgct
gttcatcctgtgtaagatgggtgtgaagaagaaagagaaatgcaagttgc
tgcgcttgactgtctgtcatcaggacatggaaacttgagatgtatgtgat
tttgacagttcatttgtccagtgaaaagattgtaaacagagtggtgtgaa
tcgctggaacctgggcctccttactgaaggaactgggactgggacaggtg
agaagaaaaataagtaaccttgttcttctcagtcttcttctggctggggt
ttca
gaattcacagaaacactcctcttcacataattgctggaagtggagatagc
aaacacttcaaaggcagaccgcatacgtgtgcatgcatgcatttgtgtgc
gtgcatgtgcctgtgtcttgggaaagccagggagaaagcccagtaacatc
tgtcatttccagtcactttaaggttggccaggttgcaggattggttttct
gcttcaggcatactgactgaagcctcaggtagaccagtttctcaggagaa
cccttcttattgtttgggcttggtgggcacatgtatttgcctatgccatt
tgtagagtccaatgaaggggctcttattgccagtaacacctgtcacagac
cttagaggagtgtgggctctaggcaatatcttaatgacacttgagttcct
tagctgggtcatcctcaagaagatcttgtgctcttttctggtcttcttgg
taccagttatgcctgtggtgcatatacatacatgcaggcaaaacactcat
acccatgaaaactaacaaaacaaatagcaaccaaccaaacagaactaacc
cataaaaataacagataatttgttcagttgagacacagggagaggtatgt
tggtggtagcataaatgaaataaaattaatcaagaatgagtcactgctaa
agtcaagcgacaccactaaagagtcttatattacctgtttatacctgaaa
gcgaggggaaaggagaaagcacttagcaggcagggcaggcagatctctac
aataagaatgacttattcaataaaataatagaaaacaaccaaccaggtct
ttgtgatatacattagttggatccctacctattgtatggaggacaataca
aaccccccaaacaaaaatgcaaactataaagaaaataggataaagtattg
ttaatcatctctcattaacaaaatgaaatattaaataaatatgcacttag
gagcagagggcaggcagtttctgattagaggtagcagacttcccatgaga
ctgtcctcaagaaagggagtggaggtagatttaacctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_84863534_84864688
seq2: B6Ng01-104O03.b_49_1202 (reverse)

seq1  TGAAACACCAGACCAGAAGAAGACTGAGAAGGACAGGGTTTACTTATTTT  50
      |||||| |||| ||||||||||||||||||| ||| || |||||||||||
seq2  TGAAACCCCAG-CCAGAAGAAGACTGAGAAGAACAAGG-TTACTTATTTT  48

seq1  --CTCTCACATGTCCCAAGTCCCAG-TCCCTCAGTAAGGGAGGCCAGGTT  97
         |||||| |||||| |||||||| ||| |||||||||  | |||||||
seq2  TCTTCTCACCTGTCCC-AGTCCCAGTTCCTTCAGTAAGGAGGCCCAGGTT  97

seq1  CCAGCGATTCACA-CACTCTGTTTACAAATCTGTTCACTGGACAAATGAA  146
      ||||||||||||| |||||||||||| ||||| |||||||||||||||||
seq2  CCAGCGATTCACACCACTCTGTTTAC-AATCTTTTCACTGGACAAATGAA  146

seq1  CTGTCAAAATCACATACATCTCAAAGTTTCCATGTCCTGATGACAGACAG  196
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGTCAAAATCACATACATCTC-AAGTTTCCATGTCCTGATGACAGACAG  195

seq1  TC-AGCGCAGCAACCTGCATTTCTCTTTTCTTCTTCACACCCATCTTACA  245
      || ||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  TCAAGCGCAGCAACTTGCATTTCTC-TTTCTTCTTCACACCCATCTTACA  244

seq1  CAGGATGAACAGCGCTCTGCAAGAAGGAAGAACTTGAGGCAGTGGTCCAG  295
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGATGAACAGCGCTCTGCAAGAAGGGAGAACTTGAGGCAGTGGTCCAG  294

seq1  TGGAGAGTTTCTCCTGCAACAACAGTGACATTTGAGGCCACGTGTCTCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTTTCTCCTGCAACAACAGTGACATTTGAGGCCACGTGTCTCTT  344

seq1  ACTGAGGATGGTGGGCTGTGCACCGTAGGGTGCTTAGAGCCTCCCCAGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATGGTGGGCTGTGCACCGTAGGGTGCTTAGAGCCTCCCCAGCC  394

seq1  TGCACCCCATGAGATGCCAGGATTATCTTACTACCAACAAATTAAGATGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCCATGAGATGCCAGGATTATCTTACTACCAACAAATTAAGATGA  444

seq1  CCAATAGATATCTCCCAACAAAGCCACTAGTGAGTGACAATTTCTGAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGATATCTCCCAACAAAGCCACTAGTGAGTGACAATTTCTGAGCT  494

seq1  GAGGAGATCTGGTTTGCCAAACAAAATCTGTGGGCTTTTTGTTTAAGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATCTGGTTTGCCAAACAAAATCTGTGGGCTTTTTGTTTAAGGTT  544

seq1  TTTTTACTACCTTGAAAATGGGGGGTTTCATTATGTTGTCCTTAAATGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTACCTTGAAAATGGGGGGTTTCATTATGTTGTCCTTAAATGAG  594

seq1  GTGCTGCTTTGAAGGAGAGATTTCTTTTGTCCCATTTAATAATTAGACAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTTGAAGGAGAGATTTCTTTTGTCCCATTTAATAATTAGACAT  644

seq1  TCTACGAAAGCTTTGAGGATACAGATTCCAGCTTAAGTCAAAGGCAGACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGAAAGCTTTGAGGATACAGATTCCAGCTTAAGTCAAAGGCAGACC  694

seq1  TCCGTGGCCACTGAGGAATGGTCTACCTGCAGACCCTCCCAGGCAGAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGCCACTGAGGAATGGTCTACCTGCAGACCCTCCCAGGCAGAAAA  744

seq1  CGACTCAGCATGCGTCACTTAAACTCCTGACATAGCTTCCTTGTTGTCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCAGCATGCGTCACTTAAACTCCTGACATAGCTTCCTTGTTGTCCC  794

seq1  TACTTGTCTCTGAAGAATCAAAGCAATCTAACCATGCACTTGCTTATAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTCTGAAGAATCAAAGCAATCTAACCATGCACTTGCTTATAAA  844

seq1  CTTCCCAAAGGTTTTCCCTTGCACTAAATAAAATGCATTAGTTACATCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAAGGTTTTCCCTTGCACTAAATAAAATGCATTAGTTACATCCA  894

seq1  AATTTGGGTGTATGGCCTGAAAACAATCTGGCCCCAGCTTCCTCTGCCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGGTGTATGGCCTGAAAACAATCTGGCCCCAGCTTCCTCTGCCAT  944

seq1  TCATTTCAGATTTCTTTCACAGCATGTATTACTACCTAAGATTACACTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGATTTCTTTCACAGCATGTATTACTACCTAAGATTACACTAA  994

seq1  CTGGCACACCTGTCTATTGCCTGTTTTTCCTAGCACTAAGCTCCATAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACACCTGTCTATTGCCTGTTTTTCCTAGCACTAAGCTCCATAAAG  1044

seq1  GTTGCAATGAACTGAATAGTTGTGTTCAGTGTTCCCGTTCTTAACTCCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAATGAACTGAATAGTTGTGTTCAGTGTTCCCGTTCTTAACTCCTT  1094

seq1  AGTCGTTCATGCATGTAGTAAATGCTTTATTAAAATTTCATGAACTAAAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTTCATGCATGTAGTAAATGCTTTATTAAAATTTCATGAACTAAAT  1144

seq1  CAAGGAATTC  1155
      ||||||||||
seq2  CAAGGAATTC  1154

seq1: chr17_84678742_84679801
seq2: B6Ng01-104O03.g_70_1108

seq1  GAATTCACAGAAACACTCCTCTTCACATAATTGCTGGAAGTGGAGATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAACACTCCTCTTCACATAATTGCTGGAAGTGGAGATAGC  50

seq1  AAACACTTCAAAGGCAGACCGCATACGTGTGCATGCATGCATTTGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCAAAGGCAGACCGCATACGTGTGCATGCATGCATTTGTGTGC  100

seq1  GTGCATGTGCCTGTGTCTTGGGAAAGCCAGGGAGAAAGCCCAGTAACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGCCTGTGTCTTGGGAAAGCCAGGGAGAAAGCCCAGTAACATC  150

seq1  TGTCATTTCCAGTCACTTTAAGGTTGGCCAGGTTGCAGGATTGGTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTCCAGTCACTTTAAGGTTGGCCAGGTTGCAGGATTGGTTTTCT  200

seq1  GCTTCAGGCATACTGACTGAAGCCTCAGGTAGACCAGTTTCTCAGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGGCATACTGACTGAAGCCTCAGGTAGACCAGTTTCTCAGGAGAA  250

seq1  CCCTTCTTATTGTTTGGGCTTGGTGGGCACATGTATTTGCCTATGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTATTGTTTGGGCTTGGTGGGCACATGTATTTGCCTATGCCATT  300

seq1  TGTAGAGTCCAATGAAGGGGCTCTTATTGCCAGTAACACCTGTCACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTCCAATGAAGGGGCTCTTATTGCCAGTAACACCTGTCACAGAC  350

seq1  CTTAGAGGAGTGTGGGCTCTAGGCAATATCTTAATGACACTTGAGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGAGTGTGGGCTCTAGGCAATATCTTAATGACACTTGAGTTCCT  400

seq1  TAGCTGGGTCATCCTCAAGAAGATCTTGTGCTCTTTTCTGGTCTTCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGTCATCCTCAAGAAGATCTTGTGCTCTTTTCTGGTCTTCTTGG  450

seq1  TACCAGTTATGCCTGTGGTGCATATACATACATGCAGGCAAAACACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTTATGCCTGTGGTGCATATACATACATGCAGGCAAAACACTCAT  500

seq1  ACCCATGAAAACTAACAAAACAAATAGCAACCAACCAAACAGAACTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGAAAACTAACAAAACAAATAGCAACCAACCAAACAGAACTAACC  550

seq1  CATAAAAATAACAGATAATTTGTTCAGTTGAGACACAGGGAGAGGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAATAACAGATAATTTGTTCAGTTGAGACACAGGGAGAGGTATGT  600

seq1  TGGTGGTAGCATAAATGAAATAAAATTAATCAAGAATGAGTCACTGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAGCATAAATGAAATAAAATTAATCAAGAATGAGTCACTGCTAA  650

seq1  AGTCAAGCGACACCACTAAAGAGTCTTATATTACCTGTTTATACCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCGACACCACTAAAGAGTCTTATATTACCTGTTTATACCTGAAA  700

seq1  GCGAGGGGAAAGGAGAAAGCACTTAGCAGGCAGGGCAGGCAGATCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGGGAAAGGAGAAAGCACTTAGCAGGCAGGGCAGGCAGATCTCTAC  750

seq1  AATAAGAATGACTTATTCAATAAAATAATAGAAAACAACCAACCAGGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATGACTTATTCAATAAAATAATAGAAAACAACCAACCAGGTCT  800

seq1  TTGTGATATACATTAGTTGGATCCCTACCTATTGTATGGAGGACAATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATATACATTAGTTGGATCCCTACCTATTGTATGGAGGACAATACA  850

seq1  AACCCCCCAAAACCAAAAATGCAAAACTATAAAAGAAAAATAGGATAAAG  900
      |||||||||||  ||||||||| ||||||||||   ||||||||||||||
seq2  AACCCCCCAAA--CAAAAATGC-AAACTATAAA--GAAAATAGGATAAAG  895

seq1  TATTTGTTAATTCATCTCTCATTAACAAAAATGAAAATAATTAAATTAAA  950
      || ||||||| ||||||||||||||| |||||||||   |||||| ||||
seq2  TA-TTGTTAA-TCATCTCTCATTAAC-AAAATGAAA--TATTAAA-TAAA  939

seq1  TATGCACTTAGGAAGCAGA-GGCAGGCAGGTGTCTGAGTTAGAGGTTAGC  999
      |||||||||||| |||||| |||||||| || ||||| ||||||| ||| 
seq2  TATGCACTTAGG-AGCAGAGGGCAGGCA-GTTTCTGA-TTAGAGG-TAG-  984

seq1  CAGAACTTCACAATGAGACTGTCTCAAAGAGAGGGAGTGGAGGTTAGATT  1049
      ||| ||||| | |||||||||||   |||| |||||||||||| ||||||
seq2  CAG-ACTTC-CCATGAGACTGTCCTCAAGAAAGGGAGTGGAGG-TAGATT  1031

seq1  TCTAAACCTCC  1060
      |   |||||||
seq2  T---AACCTCC  1039