BAC Information

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BAC

Clone NameB6Ng01-109D16
Chromosome17 (Build37)
Map Location 48,904,187 - 49,064,668
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6, EG668470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D16.bB6Ng01-109D16.g
ACCDH916191DH916192
length1,017820
definitionDH916191|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D16, 5' end.DH916192|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,064,116 - 49,064,668)(48,904,187 - 48,905,001)
sequence
gaattcttccttcccagtgcagaaagtacttccaagcagataaaatctca
agggaaggagctggagagttggctctgccatcaagaggctcattgctctc
acagggacttgggttcaattcccagcaatcacaaggtggcctgttataga
aattatttaatccagatcaagagtctctactcaggttttgaccctttagt
tcccagataaaacacacacacagcctttatatttgcaataaaccttaaac
agcacaagagctgggtggatacctactttctatgctattagaatctactt
tcctattaatagccctgaattattacttactatttattatgtttcatctg
ggctgctcttaacttcaattgaccagccctcagggccatgtttttatggc
tcacctaacccatggcaacttctccttcctcaagtctgtgaaacccaaac
cctgcctatgtctcttctgcccagatattgcctgttaacatctttattta
ccaatcaggaataacttgaaggcaggggcacttagggctatgtgtggact
ctatcctctctgaggcaaccagtttgggggcccaatattagcattagaat
aaacacagcatcaggccaacctactccagtggctcccaaccacctgtaac
cttggttccaggggagccaacgtcttcttccatcttcctgggagcatgtc
tggtatacctacctacaccctggcaaaacagccatatatgtaagataaaa
ctaaaaaaaaaaatcatctcaaggggatgatgatggcaagtgaagagttt
ttgagggactcgtggcattttgataaggagaaaaataagggagttggaag
tccaggtggggagaagtcaggccaaagttgggatagttagggagatccac
gggctcatggtatgcccaggtgacaggccagaagtttgtgttaagacgtg
aattctggaaagggactctctctgggtttcagttaaagagtccagcctcc
cacctgtaaggatgtat
gaattcttgatttttagctagtggtgagaggcttgccatgaggttcaaga
gagaccttgaggtctgctggtagggagcgagcctcctctatgggcctcag
atgctatctggtatatttttagtattgtggttggggaaaattaggtgtaa
ttttttttaaagttatttatttcttttaggtatatgagtgcactgtcact
gtcttcagccacaccagaaaagggcatcagatcccattacagatggttgt
gagttaccgtgtggttgctaggaattgaattcaggacatctggaagatta
gtcagtgctcttaactgtagagccatctccccaaccctgaaaactagggt
tttattaagttaatacaaaattcagaaggttttatctgctaaccacagga
tggtaagtcagacacacagctaggctagctatggctgacaaggagggtat
agatagccctagatagattttaatgaggctctggacttacaacatcccca
cctctccataatcactgagttgcttatacagccttgctgttttgatacat
gtggatcgatgcagggactttgtattcacattttatatcaaaggataatc
agacatttcatatgattaaaatcagatgcatcatggggaaatgacataca
cagtgaaagaaaaacttacatacccaatcccatcaatcaaacacagattc
agtcccctgtaccccttcctcctggattcccaaaaaagaagccccagata
acaccccgtgccccccaccccagggttcctgactcaagaagccccctgtc
tgtgcagcttctctactccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49064116_49064668
seq2: B6Ng01-109D16.b_50_602 (reverse)

seq1  TAGAGTCCACACATAGCCCTAAGTGCCCCTGCCTTCAAGTTATTCCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCACACATAGCCCTAAGTGCCCCTGCCTTCAAGTTATTCCTGAT  50

seq1  TGGTAAATAAAGATGTTAACAGGCAATATCTGGGCAGAAGAGACATAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATAAAGATGTTAACAGGCAATATCTGGGCAGAAGAGACATAGGC  100

seq1  AGGGTTTGGGTTTCACAGACTTGAGGAAGGAGAAGTTGCCATGGGTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGGGTTTCACAGACTTGAGGAAGGAGAAGTTGCCATGGGTTAGG  150

seq1  TGAGCCATAAAAACATGGCCCTGAGGGCTGGTCAATTGAAGTTAAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATAAAAACATGGCCCTGAGGGCTGGTCAATTGAAGTTAAGAGCA  200

seq1  GCCCAGATGAAACATAATAAATAGTAAGTAATAATTCAGGGCTATTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATGAAACATAATAAATAGTAAGTAATAATTCAGGGCTATTAATA  250

seq1  GGAAAGTAGATTCTAATAGCATAGAAAGTAGGTATCCACCCAGCTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAGATTCTAATAGCATAGAAAGTAGGTATCCACCCAGCTCTTGT  300

seq1  GCTGTTTAAGGTTTATTGCAAATATAAAGGCTGTGTGTGTGTTTTATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAAGGTTTATTGCAAATATAAAGGCTGTGTGTGTGTTTTATCTG  350

seq1  GGAACTAAAGGGTCAAAACCTGAGTAGAGACTCTTGATCTGGATTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAAGGGTCAAAACCTGAGTAGAGACTCTTGATCTGGATTAAATA  400

seq1  ATTTCTATAACAGGCCACCTTGTGATTGCTGGGAATTGAACCCAAGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATAACAGGCCACCTTGTGATTGCTGGGAATTGAACCCAAGTCCC  450

seq1  TGTGAGAGCAATGAGCCTCTTGATGGCAGAGCCAACTCTCCAGCTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGCAATGAGCCTCTTGATGGCAGAGCCAACTCTCCAGCTCCTTC  500

seq1  CCTTGAGATTTTATCTGCTTGGAAGTACTTTCTGCACTGGGAAGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGATTTTATCTGCTTGGAAGTACTTTCTGCACTGGGAAGGAAGAA  550

seq1  TTC  553
      |||
seq2  TTC  553

seq1: chr17_48904187_48905001
seq2: B6Ng01-109D16.g_69_888

seq1  GAATTCTTGATTTTTAGCTAGTGGTGAGAGGCTTGCCATGAGGTTCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATTTTTAGCTAGTGGTGAGAGGCTTGCCATGAGGTTCAAGA  50

seq1  GAGACCTTGAGGTCTGCTGGTAGGGAGCGAGCCTCCTCTATGGGCCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTGAGGTCTGCTGGTAGGGAGCGAGCCTCCTCTATGGGCCTCAG  100

seq1  ATGCTATCTGGTATATTTTTAGTATTGTGGTTGGGGAAAATTAGGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCTGGTATATTTTTAGTATTGTGGTTGGGGAAAATTAGGTGTAA  150

seq1  TTTTTTTTAAAGTTATTTATTTCTTTTAGGTATATGAGTGCACTGTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAGTTATTTATTTCTTTTAGGTATATGAGTGCACTGTCACT  200

seq1  GTCTTCAGCCACACCAGAAAAGGGCATCAGATCCCATTACAGATGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGCCACACCAGAAAAGGGCATCAGATCCCATTACAGATGGTTGT  250

seq1  GAGTTACCGTGTGGTTGCTAGGAATTGAATTCAGGACATCTGGAAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACCGTGTGGTTGCTAGGAATTGAATTCAGGACATCTGGAAGATTA  300

seq1  GTCAGTGCTCTTAACTGTAGAGCCATCTCCCCAACCCTGAAAACTAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTCTTAACTGTAGAGCCATCTCCCCAACCCTGAAAACTAGGGT  350

seq1  TTTATTAAGTTAATACAAAATTCAGAAGGTTTTATCTGCTAACCACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAGTTAATACAAAATTCAGAAGGTTTTATCTGCTAACCACAGGA  400

seq1  TGGTAAGTCAGACACACAGCTAGGCTAGCTATGGCTGACAAGGAGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTCAGACACACAGCTAGGCTAGCTATGGCTGACAAGGAGGGTAT  450

seq1  AGATAGCCCTAGATAGATTTTAATGAGGCTCTGGACTTACAACATCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCCTAGATAGATTTTAATGAGGCTCTGGACTTACAACATCCCCA  500

seq1  CCTCTCCATAATCACTGAGTTGCTTATACAGCCTTGCTGTTTTGATACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCATAATCACTGAGTTGCTTATACAGCCTTGCTGTTTTGATACAT  550

seq1  GTGGATCGATGCAGGGAC-TTGTATTCACATTTTATATCAAAGGATAATC  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGATCGATGCAGGGACTTTGTATTCACATTTTATATCAAAGGATAATC  600

seq1  AGACA-TTCATATGATTAAAATCAGATGCATCAT-GGGAAATGACATACA  647
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AGACATTTCATATGATTAAAATCAGATGCATCATGGGGAAATGACATACA  650

seq1  CAGTG-AAGAAAAACTTACATACCCAATCCCATCAATCAAAACACAGATT  696
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGTGAAAGAAAAACTTACATACCCAATCCCATCAATC-AAACACAGATT  699

seq1  CAGTCCCCTGTACCCCTT-CTCCTGGATTCCCAAAAAGGAAGCCCCAGAT  745
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CAGTCCCCTGTACCCCTTCCTCCTGGATTCCCAAAAAAGAAGCCCCAGAT  749

seq1  AACACCCCGTGCCCCCCACCCCAGGG-TCCTGACTCAAGAAGCCCCCTGT  794
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACACCCCGTGCCCCCCACCCCAGGGTTCCTGACTCAAGAAGCCCCCTGT  799

seq1  CTGTGCAGCTTCTCTACTCTG  815
      ||||||||||||||||||| |
seq2  CTGTGCAGCTTCTCTACTCCG  820