BAC Information

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BAC

Clone NameB6Ng01-109K07
Chromosome17 (Build37)
Map Location 42,456,197 - 42,457,314
singlet/doubletsinglet
Overlap geneLOC627626
Upstream geneLOC627577
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K07.bB6Ng01-109K07.g
ACCDH916498DH916499
length1,1061,069
definitionDH916498|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K07, 5' end.DH916499|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataataaaaaggcagagtgtgtttctgactttacaactttttat
gcatacattttgaaagcctgggtcaaggcgatcacctctggaatattctg
ggccaagtggtgctttgcttacattgggtacgtttaatctcttaggtggg
tttttccattttggccaattttatgtgaccccagttggtctggatcacat
catcagcattattatgttcaccagatctaaacctttctgagttcaggacg
agccagctgtttttatactttgctcattctaactggggtccttaaccact
tctctctgtcagtcagtgctgacttatcctcatgccatctctcaggcccc
acatactgctcctttcaagctaagtgattgacaatcccaattcacagtgt
tcagtagtactattttgctatcgcattaaacttgtgatttttctctgttg
gattgtcccagcacagaagttgttcatattgggcagaggtggggatactg
gttaaatagagcagaataaaaagaattaaggagctaaaatctacatatga
aatttcctctctcatccttaataataatactgatcacacttttgagtacc
aacattatggaaatataccctgacagatattactacgcacgaaggaaagt
catttgaatacaacacccaaacaaacaaacaaaaaaagtccatctcattt
tgttctttgctagaaaattctgtacctgagatacccagagtctctgtggc
agaattttaggtttctgtggtacttttgaaattacatttttatactgcaa
gagtacccgcaagattgtgtctaaccttgagagggtttgttgttctcaga
aaccccaatatagcttaaaaaccccaccgccactgaagccatgaagttag
attcaaaccagcacatttgaggaagactcatggtgggatattgatcatag
aatgccagtccatatgtaccagctctgttccttctatgggtagcagacta
attctatacctcagcaaactttgtatgaattacgtcattccttttgatac
tcatagaagtcttgcctattgtctatacaacagtcgtcagaggttgtagg
tgaaga
gaattctttgtttagctctatactccatttttaatagggttatttggttt
tcttaagttctttgtatatattggatattagccctctattagatttagga
ttggtaaagatcttttcccaatctattggttgcctttttgtcttattaac
actgtcctttgccttacagaagctttgcaattttatgaggtcccatttgt
tgattctcagtcttacagcacaagccattggtgttatgtttaggaatatt
tcgcctgtgcccatatcttcgaggctctttcccactttctcctctataag
tttcagtgtctctggtttaatgtggagttctttgatccacttagacttga
aatttgtacaaggagatacgaatggaacaattcacactcttctacatgct
gattgccacttgagccagcaccatttgttgaaaatgctgtctttctttcc
actggatgattttagctcctttgtcaaagatcaagagaccataggtatgt
gagttcatttctaagtcttcaattctgttccattgatctacctgtctgtc
tctgtaccagtaccgtacagtttttatcacaattgctctgtagtacagct
tgaggtcagggatggtgattccaccagaggttcttttattgttgagaata
gtttttgctatcctaggatttttgttattccagatgaatttgcaaattgc
cctctctaactcagtgaagaattgagttgcaattttgatggggattgcat
tgaatctgtagattgcttttgacaaaatagccattttgactatattaatc
ctgccaatccatgagcatgggagatctttccatcttctgagatcttcgat
ttctttcttcagagacttgaagttcttatcatacagatctttacttcctt
aattaaagtcacacccaatatgtttttattaattgtgacattgggaaggt
tgtgtttccctaatctctcatcggtttcctttttgtgaaaaggccactga
tctttaatgtattttatatcgcgtactgccgtgtgtcaagaaacttttgt
cccagaagatatgttgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42456197_42457314
seq2: B6Ng01-109K07.b_48_1153 (reverse)

seq1  TCTTCCACCTACAACCTCCTGACTGACTGGTTGGTTGATAGACAATTAGG  50
      |||| |||||||||||| ||||| |||| ||||    |||||||| ||||
seq2  TCTT-CACCTACAACCT-CTGAC-GACT-GTTG---TATAGACAA-TAGG  42

seq1  CAGGAC-TCTATGAGTAATCATAAAGGAATGACGTAATTCATTACAAAGT  99
      || ||| ||||||||| |||| ||||||||||||||||||| ||||||||
seq2  CAAGACTTCTATGAGT-ATCA-AAAGGAATGACGTAATTCA-TACAAAGT  89

seq1  TTGCTGAGTAATAGAATTAGTCTGCTACCCATAGAAGGAACAGAGCTGGT  149
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGGTATAGAATTAGTCTGCTACCCATAGAAGGAACAGAGCTGGT  139

seq1  ACATATGGACTGGCATTCTTATTGATCAATATCCCACCATGAGTCTTTCC  199
      |||||||||||||||||||   ||||||||||||||||||||||| ||||
seq2  ACATATGGACTGGCATTCT--ATGATCAATATCCCACCATGAGTC-TTCC  186

seq1  TCAAATGTGCTGGTTTGAATCTAACTTCATGGCTTCAGTGGCGGTGGGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTGCTGGTTTGAATCTAACTTCATGGCTTCAGTGGCGGTGGGGT  236

seq1  TTTTAAGCTATATTGGGGTTTCTGAGAACAACAAACCCTCTCAAGGTTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCTATATTGGGGTTTCTGAGAACAACAAACCCTCTCAAGGTTAG  286

seq1  ACACAATCTTGCGGGTACTCTTGCAGTAT-AAAATGTAATTTCAAAAGTA  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACACAATCTTGCGGGTACTCTTGCAGTATAAAAATGTAATTTCAAAAGTA  336

seq1  CCACAGAAACCTAAAATTCTGCCACAGAGACTCTGGGTATCTCAGGTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAACCTAAAATTCTGCCACAGAGACTCTGGGTATCTCAGGTACA  386

seq1  GAATTTTCTAGCAAAGAACAAAATGAGATGGACTTTTTTTGTTTGTTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTAGCAAAGAACAAAATGAGATGGACTTTTTTTGTTTGTTTGT  436

seq1  TTGGGTGTTGTATTCAAATGACTTTCCTTCGTGCGTAGTAATATCTGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTTGTATTCAAATGACTTTCCTTCGTGCGTAGTAATATCTGTCA  486

seq1  GGGTATATTTCCATAATGTTGGTACTCAAAAGTGTGATCAGTATTATTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATATTTCCATAATGTTGGTACTCAAAAGTGTGATCAGTATTATTAT  536

seq1  TAAGGATGAGAGAGGAAATTTCATATGTAGATTTTAGCTCCTTAATTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATGAGAGAGGAAATTTCATATGTAGATTTTAGCTCCTTAATTCTT  586

seq1  TTTATTCTGCTCTATTTAACCAGTATCCCCACCTCTGCCCAATATGAACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTGCTCTATTTAACCAGTATCCCCACCTCTGCCCAATATGAACA  636

seq1  ACTTCTGTGCTGGGACAATCCAACAGAGAAAAATCACAAGTTTAATGCGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGCTGGGACAATCCAACAGAGAAAAATCACAAGTTTAATGCGA  686

seq1  TAGCAAAATAGTACTACTGAACACTGTGAATTGGGATTGTCAATCACTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAATAGTACTACTGAACACTGTGAATTGGGATTGTCAATCACTTA  736

seq1  GCTTGAAAGGAGCAGTATGTGGGGCCTGAGAGATGGCATGAGGATAAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAGGAGCAGTATGTGGGGCCTGAGAGATGGCATGAGGATAAGTC  786

seq1  AGCACTGACTGACAGAGAGAAGTGGTTAAGGACCCCAGTTAGAATGAGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTGACAGAGAGAAGTGGTTAAGGACCCCAGTTAGAATGAGCA  836

seq1  AAGTATAAAAACAGCTGGCTCGTCCTGAACTCAGAAAGGTTTAGATCTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAAAACAGCTGGCTCGTCCTGAACTCAGAAAGGTTTAGATCTGG  886

seq1  TGAACATAATAATGCTGATGATGTGATCCAGACCAACTGGGGTCACATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAATAATGCTGATGATGTGATCCAGACCAACTGGGGTCACATAA  936

seq1  AATTGGCCAAAATGGAAAAACCCACCTAAGAGATTAAACGTACCCAATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCCAAAATGGAAAAACCCACCTAAGAGATTAAACGTACCCAATGT  986

seq1  AAGCAAAGCACCACTTGGCCCAGAATATTCCAGAGGTGATCGCCTTGACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGCACCACTTGGCCCAGAATATTCCAGAGGTGATCGCCTTGACC  1036

seq1  CAGGCTTTCAAAATGTATGCATAAAAAGTTGTAAAGTCAGAAACACACTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTCAAAATGTATGCATAAAAAGTTGTAAAGTCAGAAACACACTC  1086

seq1  TGCCTTTTTATTATGAATTC  1118
      ||||||||||||||||||||
seq2  TGCCTTTTTATTATGAATTC  1106