BAC Information

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BAC

Clone NameB6Ng01-110G22
Chromosome17 (Build37)
Map Location 14,359,359 - 14,535,990
singlet/doubletdoublet
Overlap geneSmoc2
Upstream geneSmok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
Downstream geneLOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110G22.bB6Ng01-110G22.g
ACCDH917057DH917058
length957992
definitionDH917057|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G22, 5' end.DH917058|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,359,359 - 14,360,011)(14,534,962 - 14,535,990)
sequence
gaattcctcagctgctggtggccttgtggctgtctccctgccctctaatc
ctgtcagtgctgttggggtctggcaccccctggtggaaagaggccttgga
tgaccttttaaaaatttatttacattcttgtcgttgcatgccttcccccc
acaccccccaccctcggtcaggtcccctctcccacagttcctcatcccat
tcttcctcccccttgcctccaagagggtgctccccctccacaccaggcct
gcccgttccctggggggtctcaagtctccatcttctcccactaaggtctg
accaggcagacctctgctatacttgtgcctgaggcctcagactggcccgt
gtatgctcctgattggtggctcagtctctgggaggtccctggggtctggg
taaattgagaatgctggtcttcctatgggatcactctccccttcaacttc
ttcagtcctttccctaattcaaccataggggtccctgaccttagttcaat
ggttggctgtaagtatctgcttctgtctcagtcagctgcctgtagggcct
ctcagagaacagccatgccaggctcccatctgtaagcacatcatagcatc
actaataggccttggatgttctctcatgagatggatcccaagttgggctg
gtcattggactgcctttccttcagtctcgtctccatttttactcctgcag
gtcttttagacaggaacagtttagggtcagaaattctgactggggggttg
gtagccctgtctctctgcttgaggccctgtctgtctactgggaggtggac
tcatcaagtttcccctcctcaatgttgagcatcttagctaaagccacccc
ccattgagttcttagactcttacctcccaggtctctggtactttctagag
gatcccacacctcactgccaccttcccccatacacacacaccgaggtggt
tcatctc
gaattcttttaaagctgtacattctgagatacagataagtcaggctgtga
gtcaaaccttgacactgtgccggaaggacgtccacctctcacctgaggtg
aagaacctatgccatcactttggactcagcggactccactgtttagatgg
actttcctctgtgagagtgcaaacacagcaagcagatgccaacagccccc
agcgactgggctcgcaggcactattgtgggtcagacactcagaaggcaag
tcagtcacttctatagtacatgacaggaggttgaaatttagttgacttct
tttgccttagcttgtgcaaatgtgacacttccccctcagtgttccttctc
cccttatgccttccttagcaaagaaagcacaagatgaagggtggctttat
gctaaggaggcttcatacaggagacagccaggagctcgctgtcaggacgg
catgggaacaagtgtttttagaaaaacaaaaaaaaaaaactttaaaataa
agtttcttttagaaataagagtgagagattgtgaacacccagagctgagt
ttaagtactgaagtaccacctggacagctccatcaccctgtactgtgagg
aagtgggcacacaggcaccgttattcctaccatgacaaaaaaaaaaaaaa
ccaagtctcactgtgtctacagtgtacacaggagagcatctgtagggtga
gccttgttggtgggatcaaggccccagctgtacacttgaacctggataag
aagataagcctcacatgtgcatagcagggatcaacgataaataagtccca
gcactcggggaggcagaggcagtgctccctgagctcaaggccagcctggt
ctgcagagtgagttcaggacagccaggctacacacagagcatgtctcaaa
acagtacacacaacacaaacaaaagcacttttttggtgcagatcaagtaa
tagtcaaccagtagataagtctcagactcagttcaactagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14359359_14360011
seq2: B6Ng01-110G22.b_46_698

seq1  GAATTCCTCAGCTGCTGGTGGCCTTGTGGCTGTCTCCCTGCCCTCTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCTGCTGGTGGCCTTGTGGCTGTCTCCCTGCCCTCTAATC  50

seq1  CTGTCAGTGCTGTTGGGGTCTGGCACCCCCTGGTGGAAAGAGGCCTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTGCTGTTGGGGTCTGGCACCCCCTGGTGGAAAGAGGCCTTGGA  100

seq1  TGACCTTTTAAAAATTTATTTACATTCTTGTCGTTGCATGCCTTCCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTTAAAAATTTATTTACATTCTTGTCGTTGCATGCCTTCCCCCC  150

seq1  ACACCCCCCACCCTCGGTCAGGTCCCCTCTCCCACAGTTCCTCATCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCCACCCTCGGTCAGGTCCCCTCTCCCACAGTTCCTCATCCCAT  200

seq1  TCTTCCTCCCCCTTGCCTCCAAGAGGGTGCTCCCCCTCCACACCAGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCCCCTTGCCTCCAAGAGGGTGCTCCCCCTCCACACCAGGCCT  250

seq1  GCCCGTTCCCTGGGGGGTCTCAAGTCTCCATCTTCTCCCACTAAGGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTCCCTGGGGGGTCTCAAGTCTCCATCTTCTCCCACTAAGGTCTG  300

seq1  ACCAGGCAGACCTCTGCTATACTTGTGCCTGAGGCCTCAGACTGGCCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCAGACCTCTGCTATACTTGTGCCTGAGGCCTCAGACTGGCCCGT  350

seq1  GTATGCTCCTGATTGGTGGCTCAGTCTCTGGGAGGTCCCTGGGGTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCCTGATTGGTGGCTCAGTCTCTGGGAGGTCCCTGGGGTCTGGG  400

seq1  TAAATTGAGAATGCTGGTCTTCCTATGGGATCACTCTCCCCTTCAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAGAATGCTGGTCTTCCTATGGGATCACTCTCCCCTTCAACTTC  450

seq1  TTCAGTCCTTTCCCTAATTCAACCATAGGGGTCCCTGACCTTAGTTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCTTTCCCTAATTCAACCATAGGGGTCCCTGACCTTAGTTCAAT  500

seq1  GGTTGGCTGTAAGTATCTGCTTCTGTCTCAGTCAGCTGCCTGTAGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTGTAAGTATCTGCTTCTGTCTCAGTCAGCTGCCTGTAGGGCCT  550

seq1  CTCAGAGAACAGCCATGCCAGGCTCCCATCTGTAAGCACATCATAGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAACAGCCATGCCAGGCTCCCATCTGTAAGCACATCATAGCATC  600

seq1  ACTAATAGGCCTTGGATGTTCTCTCATGAGATGGATCCCAAGTTGGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAGGCCTTGGATGTTCTCTCATGAGATGGATCCCAAGTTGGGCTG  650

seq1  GTC  653
      |||
seq2  GTC  653

seq1: chr17_14534962_14535990
seq2: B6Ng01-110G22.g_66_1057 (reverse)

seq1  ATCTATAGGTTGAAACTGAGTCTGAGACTTATCTACTGGGTTTTGACTTA  50
      |||||   |||| ||||||||||||||||||||||||||   ||||| ||
seq2  ATCTA---GTTG-AACTGAGTCTGAGACTTATCTACTGG---TTGAC-TA  42

seq1  TCTACTTTGGAATTCTGCAACTCAAAAAAAGTTGGCTTTTTGGTTTTTGT  100
      | |||||  ||  ||||||   | ||||||||          | ||||||
seq2  T-TACTT--GA--TCTGCA---CCAAAAAAGT----------GCTTTTGT  74

seq1  TTGTTTGTTTGTTTGTTTACTTGTTTTTGAGACATGGCTTCTGTGTGTAG  150
      |||| |     | ||| ||||   ||||||||||||   |||||||||||
seq2  TTGTGT-----TGTGTGTACT--GTTTTGAGACATG--CTCTGTGTGTAG  115

seq1  CCCTGGCTGTCCTGGAACTCACTCTGCAGACCAGGCTGGCCTTGAGCTCA  200
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -CCTGGCTGTCCT-GAACTCACTCTGCAGACCAGGCTGGCCTTGAGCTCA  163

seq1  GGGAGCCACTGCCTCTGCCT-CCCGAGTGCTGGGACTTATTTATCGTTGA  249
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGAG-CACTGCCTCTGCCTCCCCGAGTGCTGGGACTTATTTATCGTTGA  212

seq1  TCCCTGCTATGCACATGTGAGGCTTATCTTCTTATCCAGGTTCAAGTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTATGCACATGTGAGGCTTATCTTCTTATCCAGGTTCAAGTGTA  262

seq1  CAGCTGGGGCCTTGATCCCACCAACAAGGCTCACCCTACAGATGCTCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGGCCTTGATCCCACCAACAAGGCTCACCCTACAGATGCTCTCC  312

seq1  TGTGTACACTGTAGACACAGTGAGACTTGGTTTTTTTTTTTTTTGTCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACTGTAGACACAGTGAGACTTGGTTTTTTTTTTTTTTGTCATG  362

seq1  GTAGGAATAACGGTGCCTGTGTGCCCACTTCCTCACAGTACAGGGTGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATAACGGTGCCTGTGTGCCCACTTCCTCACAGTACAGGGTGATG  412

seq1  GAGCTGTCCAGGTGGTACTTCAGTACTTAAACTCAGCTCTGGGTGTTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCCAGGTGGTACTTCAGTACTTAAACTCAGCTCTGGGTGTTCAC  462

seq1  AATCTCTCACTCTTATTTCTAAAAGAAACTTTATTTTAAAGTTTTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCACTCTTATTTCTAAAAGAAACTTTATTTTAAAGTTTTTTTTT  512

seq1  TTTGTTTTTCTAAAAACACTTGTTCCCATGCCGTCCTGACAGCGAGCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCTAAAAACACTTGTTCCCATGCCGTCCTGACAGCGAGCTCC  562

seq1  TGGCTGTCTCCTGTATGAAGCCTCCTTAGCATAAAGCCACCCTTCATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCTCCTGTATGAAGCCTCCTTAGCATAAAGCCACCCTTCATCTT  612

seq1  GTGCTTTCTTTGCTAAGGAAGGCATAAGGGGAGAAGGAACACTGAGGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCTTTGCTAAGGAAGGCATAAGGGGAGAAGGAACACTGAGGGGG  662

seq1  AAGTGTCACATTTGCACAAGCTAAGGCAAAAGAAGTCAACTAAATTTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCACATTTGCACAAGCTAAGGCAAAAGAAGTCAACTAAATTTCAA  712

seq1  CCTCCTGTCATGTACTATAGAAGTGACTGACTTGCCTTCTGAGTGTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTCATGTACTATAGAAGTGACTGACTTGCCTTCTGAGTGTCTGA  762

seq1  CCCACAATAGTGCCTGCGAGCCCAGTCGCTGGGGGCTGTTGGCATCTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATAGTGCCTGCGAGCCCAGTCGCTGGGGGCTGTTGGCATCTGCT  812

seq1  TGCTGTGTTTGCACTCTCACAGAGGAAAGTCCATCTAAACAGTGGAGTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTTTGCACTCTCACAGAGGAAAGTCCATCTAAACAGTGGAGTCC  862

seq1  GCTGAGTCCAAAGTGATGGCATAGGTTCTTCACCTCAGGTGAGAGGTGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCCAAAGTGATGGCATAGGTTCTTCACCTCAGGTGAGAGGTGGA  912

seq1  CGTCCTTCCGGCACAGTGTCAAGGTTTGACTCACAGCCTGACTTATCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTCCGGCACAGTGTCAAGGTTTGACTCACAGCCTGACTTATCTGT  962

seq1  ATCTCAGAATGTACAGCTTTAAAAGAATTC  1029
      ||||||||||||||||||||||||||||||
seq2  ATCTCAGAATGTACAGCTTTAAAAGAATTC  992