BAC Information

Click to search

BAC

Clone NameB6Ng01-110L06
Chromosome17 (Build37)
Map Location 59,575,964 - 59,597,090
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
Downstream geneLOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110L06.bB6Ng01-110L06.g
ACCDH917252DH917253
length1,1401,158
definitionDH917252|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L06, 5' end.DH917253|Mus musculus domesticus DNA, BAC clone: B6Ng01-110L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,595,926 - 59,597,090)(59,575,964 - 59,577,146)
sequence
gaattccatttttccctttctggtgtgtttgtgtatccatgaatatctat
gagtgagtgcaggtaggtttgtgtgtgtgtgtgattatttaatataggat
ctctgcttcaccgctgcataaatcaggataactagtctgtgatcctccag
gaattctccttcctctctctccatcttcattaggaatgggaacaatgata
ttttatgtcagtgcatgtcatactataggtttacacaagcatttctgcct
ttatctgagtctgggggattaaaactcaggccctcaaacacttgctatat
acacctagtcatctctgtagctttctgcattcttagtatgataaatcttt
agtatttggggctatattgaatgaaatgcctttcagctgtaaatctaaga
tatgcattttcttatgtatatctttaataagttatgccttccacttctac
aagaaagatattacatgtcatttgacacgtgaactgatggaagtgttaca
catttaagtgactttccaaagtcatccaggtaagtaaaattacataaggt
agcgatgctaaggaaccctgtcaatcttccttttctgctgcaattctcca
gtcaataaattccagccgcctgtactctgcatcacacacctgttaaagac
tttggaacaggcctttgaattgcttaacattcattacctctgaacgtaaa
gtagaaagtagaaacgacctaagtaattctgtttaaggactgagaattat
aagaagaaatgatgagagagagagaaaaaaaaaagacatgtgttgaaact
gctaaaggtgagccatttggtgagacttcttggcttaggaacagaaaatg
tcagaattgtttatcgagatagagggtgaaggttttctagattattgtaa
gtttgtttggcgtgaatcttggtgccagcccagactgcagcggactgagt
gctaagccgcagtcagcttgtcctcctcatctcaaacatcaaatgctaaa
agaatctgttgatttctcatgcatctagagtatacatgaaaatttacaat
ttacacagtgttttcttcactagagaatgcatgttacctgtagcaagaac
tgtagttgagtatgataatgattgaacaagagcatgtttt
gaattcttaacagcaagttccaaaagtatttaagtacttacatataagct
aactgtattcttgaagacatgtaacacatacgaatacacataaacataca
cagtcaaacgtacacacatagtcattaagtgacaaaagaggtaaaagcat
actcattattctattaaatgaacttcagaatgcctgtcatgcaagaataa
ttacatagagcgtgcaaaataaagcaaagcaaaacaaaacaaaaatatga
cttacgaagaggaaaagaaataccctgtaatcaaaaccatcccagaactt
aaaatactattagagttaagaggcatagatatatcaaaatagttatgtat
agttgaattttacatgttacataagatcaaaaaaaaaatgattgaacatg
ttggtaggaaaattgaagttacagagggttctagtggctatttctccaaa
taaaactatggtttctgaggaaaggaagtaacatgtaaggttgataaaca
aagtctaaataggaaagataacagagggagcttgcaaccatggcagtatg
aacttgcccaagagctgggctgctttcccttcctaccgggtgcataggag
aaattactttcccccacattctgcagacacttatcttttgcctatttgat
attattattacatgtgtgatgctatattttgttgagattttgattttaat
atcttgagttgtaatgataaaagatttttatgtctgtcaaccatgcctgt
taatcatcttatacattcttttacagagatagatgcacattaaaatcttt
atccattttgatatttagcaattatgcatcttgatttttcctattgttga
gttataatgaatttcttacaggttttagtaaaaaacctcacagttctaag
gtaattaatttgcaaatattctgaatattttctaaattagtatcttatat
tcatgacctattattgggtatatttatcatttcagttctctcagggttct
tacatagctaggtactccaatatcgtaaatatacatacagcatgtattta
gcatgactgttcttttgaaagctaacacaagctgaaagagtcgatgcaga
tcttaccccacatggacaaagcctggtgatcttagtcgatagaaactgga
gaactgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59595926_59597090
seq2: B6Ng01-110L06.b_46_1185 (reverse)

seq1  AAAACATGGCTCTTGTTTCCCATTCATTATCATACCTCCAACTACACTTC  50
      ||||||| |||||||||   || ||||||||||||   |||||||| |||
seq2  AAAACAT-GCTCTTGTT---CAATCATTATCATAC--TCAACTACAGTTC  44

seq1  TGTGCTTAACAGGGTTAAACATGGCATCTCTAGTGAAGAAAAACACTGGT  100
      | ||||  |||||    ||||||   |||||||||||| |||||||||  
seq2  T-TGCT--ACAGG---TAACATGCATTCTCTAGTGAAG-AAAACACTG--  85

seq1  TGTAAATGGTAAATTTTCATGTATTACCTCTTAGATGCCATGAGAAATTC  150
      ||||||| ||||||||||||||||   ||| |||||| ||||||||| ||
seq2  TGTAAATTGTAAATTTTCATGTAT--ACTC-TAGATG-CATGAGAAA-TC  130

seq1  AACAAGAATTCTTTTAGCATTTGATGTTTGAGATGAGGAGGACCAAGCTG  200
      ||||   ||||||||||||||||||||||||||||||||||| |||||||
seq2  AACA--GATTCTTTTAGCATTTGATGTTTGAGATGAGGAGGA-CAAGCTG  177

seq1  ACTGCGGCTTAGCACTCAGTCCGCTGCAGTCTGGGCTGGCACCAAGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGCTTAGCACTCAGTCCGCTGCAGTCTGGGCTGGCACCAAGATTC  227

seq1  ACGCCAAACAAACTTACAATAATCTAGAAAACCTTCACCCCTCTATCTCG  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACGCCAAACAAACTTACAATAATCTAGAAAACCTTCA-CCCTCTATCTCG  276

seq1  ATAAACAATTCCTGACATTTTCTGTTCCTAAGCCAAGAAGTCTCACCAAA  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAATT-CTGACATTTTCTGTTCCTAAGCCAAGAAGTCTCACCAAA  325

seq1  TGGCTCACCTTTAGCAGTTTCAACACATGTCTTTTTTTTTTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACCTTTAGCAGTTTCAACACATGTCTTTTTTTTTTCTCTCTCTC  375

seq1  TCATCATTTCTTCTTATAATTCTCAGTCCTTAAACAGAATTACTTAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTCTTCTTATAATTCTCAGTCCTTAAACAGAATTACTTAGGTC  425

seq1  GTTTCTACTTTCTACTTTACGTTCAGAGGTAATGAATGTTAAGCAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACTTTCTACTTTACGTTCAGAGGTAATGAATGTTAAGCAATTCA  475

seq1  AAGGCCTGTTCCAAAGTCTTTAACAGGTGTGTGATGCAGAGTACAGGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGTTCCAAAGTCTTTAACAGGTGTGTGATGCAGAGTACAGGCGG  525

seq1  CTGGAATTTATTGACTGGAGAATTGCAGCAGAAAAGGAAGATTGACAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTTATTGACTGGAGAATTGCAGCAGAAAAGGAAGATTGACAGGG  575

seq1  TTCCTTAGCATCGCTACCTTATGTAATTTTACTTACCTGGATGACTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGCATCGCTACCTTATGTAATTTTACTTACCTGGATGACTTTGG  625

seq1  AAAGTCACTTAAATGTGTAACACTTCCATCAGTTCACGTGTCAAATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTTAAATGTGTAACACTTCCATCAGTTCACGTGTCAAATGACA  675

seq1  TGTAATATCTTTCTTGTAGAAGTGGAAGGCATAACTTATTAAAGATATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATCTTTCTTGTAGAAGTGGAAGGCATAACTTATTAAAGATATAC  725

seq1  ATAAGAAAATGCATATCTTAGATTTACAGCTGAAAGGCATTTCATTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAATGCATATCTTAGATTTACAGCTGAAAGGCATTTCATTCAAT  775

seq1  ATAGCCCCAAATACTAAAGATTTATCATACTAAGAATGCAGAAAGCTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCAAATACTAAAGATTTATCATACTAAGAATGCAGAAAGCTACA  825

seq1  GAGATGACTAGGTGTATATAGCAAGTGTTTGAGGGCCTGAGTTTTAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTAGGTGTATATAGCAAGTGTTTGAGGGCCTGAGTTTTAATCC  875

seq1  CCCAGACTCAGATAAAGGCAGAAATGCTTGTGTAAACCTATAGTATGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTCAGATAAAGGCAGAAATGCTTGTGTAAACCTATAGTATGACA  925

seq1  TGCACTGACATAAAATATCATTGTTCCCATTCCTAATGAAGATGGAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGACATAAAATATCATTGTTCCCATTCCTAATGAAGATGGAGAGA  975

seq1  GAGGAAGGAGAATTCCTGGAGGATCACAGACTAGTTATCCTGATTTATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAGAATTCCTGGAGGATCACAGACTAGTTATCCTGATTTATGC  1025

seq1  AGCGGTGAAGCAGAGATCCTATATTAAATAATCACACACACACACAAACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTGAAGCAGAGATCCTATATTAAATAATCACACACACACACAAACC  1075

seq1  TACCTGCACTCACTCATAGATATTCATGGATACACAAACACACCAGAAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCACTCACTCATAGATATTCATGGATACACAAACACACCAGAAAG  1125

seq1  GGAAAAATGGAATTC  1165
      |||||||||||||||
seq2  GGAAAAATGGAATTC  1140

seq1: chr17_59575964_59577146
seq2: B6Ng01-110L06.g_68_1225

seq1  GAATTCTTAACAGCAAGTTCCAAAAGTATTTAAGTACTTACATATAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAGCAAGTTCCAAAAGTATTTAAGTACTTACATATAAGCT  50

seq1  AACTGTATTCTTGAAGACATGTAACACATACGAATACACATAAACATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTCTTGAAGACATGTAACACATACGAATACACATAAACATACA  100

seq1  CAGTCAAACGTACACACATAGTCATTAAGTGACAAAAGAGGTAAAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAACGTACACACATAGTCATTAAGTGACAAAAGAGGTAAAAGCAT  150

seq1  ACTCATTATTCTATTAAATGAACTTCAGAATGCCTGTCATGCAAGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTATTCTATTAAATGAACTTCAGAATGCCTGTCATGCAAGAATAA  200

seq1  TTACATAGAGCGTGCAAAATAAAGCAAAGCAAAACAAAACAAAAATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGAGCGTGCAAAATAAAGCAAAGCAAAACAAAACAAAAATATGA  250

seq1  CTTACGAAGAGGAAAAGAAATACCCTGTAATCAAAACCATCCCAGAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGAAGAGGAAAAGAAATACCCTGTAATCAAAACCATCCCAGAACTT  300

seq1  AAAATACTATTAGAGTTAAGAGGCATAGATATATCAAAATAGTTATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTATTAGAGTTAAGAGGCATAGATATATCAAAATAGTTATGTAT  350

seq1  AGTTGAATTTTACATGTTACATAAGATCAAAAAAAAAATGATTGAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATTTTACATGTTACATAAGATCAAAAAAAAAATGATTGAACATG  400

seq1  TTGGTAGGAAAATTGAAGTTACAGAGGGTTCTAGTGGCTATTTCTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGAAAATTGAAGTTACAGAGGGTTCTAGTGGCTATTTCTCCAAA  450

seq1  TAAAACTATGGTTTCTGAGGAAAGGAAGTAACATGTAAGGTTGATAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATGGTTTCTGAGGAAAGGAAGTAACATGTAAGGTTGATAAACA  500

seq1  AAGTCTAAATAGGAAAGATAACAGAGGGAGCTTGCAACCATGGCAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAATAGGAAAGATAACAGAGGGAGCTTGCAACCATGGCAGTATG  550

seq1  AACTTGCCCAAGAGCTGGGCTGCTTTCCCTTCCTACCGGGTGCATAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCCCAAGAGCTGGGCTGCTTTCCCTTCCTACCGGGTGCATAGGAG  600

seq1  AAATTACTTTCCCCCACATTCTGCAGACACTTATCTTTTGCCTATTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTCCCCCACATTCTGCAGACACTTATCTTTTGCCTATTTGAT  650

seq1  ATTATTATTACATGTGTGATGCTATATTTTGTTGAGATTTTGATTTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTACATGTGTGATGCTATATTTTGTTGAGATTTTGATTTTAAT  700

seq1  ATCTTGAGTTGTAATGATAAAAGATTTTTATGTCTGTCAACCATGCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGTTGTAATGATAAAAGATTTTTATGTCTGTCAACCATGCCTGT  750

seq1  TAATCATCTTATACATTCTTTTACAGAGATAGATGCACATTAAAATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCTTATACATTCTTTTACAGAGATAGATGCACATTAAAATCTTT  800

seq1  ATCCATTTTGATATTTAGCAATTATGCATCTTGATTTATTCCTATTGTTG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATCCATTTTGATATTTAGCAATTATGCATCTTGATTT-TTCCTATTGTTG  849

seq1  AGTTATAATGAATTTCTTACAGGTTTTAGTAAAAAACCTCACAGTTCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAATGAATTTCTTACAGGTTTTAGTAAAAAACCTCACAGTTCTAA  899

seq1  GGTAATTAATTTGCAAATATTTCTG-ATATTTTCTAAATTAGTATCTTAT  949
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GGTAATTAATTTGCAAATA-TTCTGAATATTTTCTAAATTAGTATCTTAT  948

seq1  ATTCATGACCTATTATTGGGTATATTTATCATTTCAGTTCTCTCAAGGGT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTCATGACCTATTATTGGGTATATTTATCATTTCAGTTCTCTC-AGGGT  997

seq1  TCTTACATAGCTAGGTACTCCAATATCGTAAATATAACCAATACAAGCAT  1049
      ||||||||||||||||||||||||||||||||||||    |||| |||||
seq2  TCTTACATAGCTAGGTACTCCAATATCGTAAATATA---CATAC-AGCAT  1043

seq1  GTATTTAGCATGACTGTTC-TCTGAAAGGCCTAACAACCAGCTGAAAGAG  1098
      ||||||||||||||||||| | ||||||  ||||| || |||||||||||
seq2  GTATTTAGCATGACTGTTCTTTTGAAAG--CTAAC-ACAAGCTGAAAGAG  1090

seq1  TCAGATGCAGATACTTACACCCAACCAATGGACAAAAGCTGGTGATCCCT  1148
      || ||||||||| ||||| ||||    |||||||||  |||||||||   
seq2  TC-GATGCAGAT-CTTAC-CCCA---CATGGACAAAGCCTGGTGATC---  1131

seq1  GTAGTCGAATTAGGGAAAAACTGGAAGAAACTGAG  1183
       |||||||  |||    ||||||||   |||||||
seq2  TTAGTCGA--TAG----AAACTGGA--GAACTGAG  1158