BAC Information

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BAC

Clone NameB6Ng01-111E19
Chromosome16 (Build37)17 (Build37)
Map Location 88,042,224 - 88,042,29644,514,118 - 44,515,182
singlet/doubletsingletsinglet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111E19.bB6Ng01-111E19.g
ACCDH917678DH917679
length1291,062
definitionDH917678|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E19, 5' end.DH917679|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,042,224 - 88,042,296)(44,514,118 - 44,515,182)
sequence
caaaccagtctcagttacatagtgagtttaaggccaaagccagcctatgc
tatagaattctctctctctctctctctctctctctctctctctctctctc
tctctctctgtctctgtctctctctctct
gaattcaagcacaaaatcccaagatgggtggttcccgaggaacagcgcag
agaacaggttgttttctgacctccatgtgcacgcatacacacttgcacat
gcatgcatttatatacacacaggaaaaccctgacatacacacacacacac
acacacacacacacacacacacactgagagagagagagagagagagagag
agagagagagagagagagatgttaacacgagataaaaatcttgactccag
gaggaattatcctgcagagtttctcatttcttctgtacctcagtgtacaa
gcaaccagatagaagaaaatggctttactagattgtgggtcaatagtgtt
gtgaggaggtgccaaccctggcatttttagcaactctgatttgcataccc
tgtcccacaattgtctagcctactcttgagctaggatggacccatgtgtg
gcttttgatttgccaaggtatctttattttcaccttgaggcatagtttgc
agcattggattcctaactcataagcagatgctccaaagttctgtttttag
gcgcattcaagaggtccagagagagatggagcacggagagctacactctc
ctcctttgtgcatcctctctgggaaaggcactgctttcacatccatcagg
aactggctaggcttacctggcttgattttgtggaatgtaccatagatctt
tcctatctgaaactctaaatggcatacacataaactcacatgacagtcat
ccttttcatatatttatatttcctttcaaaagctttactcttgagatggc
tcagtgggtcaaggcatttcccccagcttggatgacctgagttaaatccc
tggaagtcgcatgatggaaagagagaacagactatggaatggttgcctct
gacttccataaacgtgggcaccaggtgttatgtatcgcaacccaaaaact
acaaatataaatagaattaatatcttttctcactttgctgcttgctgtgt
gccacctagggaaggtccaccaaattgtacaccccgctatcctttatacc
gaaattttcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88042224_88042296
seq2: B6Ng01-111E19.b_107_175

seq1  TCTCTCTCTGTGTCTCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTGTC  50
      ||||||||    ||||||||| ||||||| ||||| ||||| ||||| ||
seq2  TCTCTCTC----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  46

seq1  TCTGTCTCTGTCTCTCTCTCTCT  73
      |||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTCTCTCTCT  69

seq1: chr17_44514118_44515182
seq2: B6Ng01-111E19.g_68_1129 (reverse)

seq1  CTTGAAAATTTCGTTTATAAAGGATAGCGGTGCGTGAACAA-TAGTTGGA  49
      |||||||||||||  ||||||||||||||  | ||| |||| | | ||||
seq2  CTTGAAAATTTCG-GTATAAAGGATAGCG--GGGTGTACAATTTGGTGGA  47

seq1  CACTCACCAAGTGGCAAACAAGCAAGCAAGCAAAGTGAGAAAAGATATTA  99
      |  || | | |||||| || ||||||| ||||||||||||||||||||||
seq2  CCTTCCCTAGGTGGCACAC-AGCAAGC-AGCAAAGTGAGAAAAGATATTA  95

seq1  TATCTTATTTATATTTGTTAGTTTTGTGTTTGCG-TACATACGCCTTGGT  148
       ||  |||||||||||| |||||||  | ||||| ||||||   | ||||
seq2  -ATTCTATTTATATTTG-TAGTTTTTGGGTTGCGATACATAACACCTGGT  143

seq1  GCTCACGTATATGGAAGTCAGAGGGCAACATTCCATAGTCTGTTCTCTCC  198
      || ||||| |||||||||||||||  | ||||||||||||||||||||| 
seq2  GCCCACGTTTATGGAAGTCAGAGGCAACCATTCCATAGTCTGTTCTCTCT  193

seq1  TTCCATCATGCGACTTCCAGGAATCTAACTCAGGTCAT-CAAGCTGGGCG  247
      ||||||||||||||||||||| || ||||||||||||| ||||||||  |
seq2  TTCCATCATGCGACTTCCAGGGATTTAACTCAGGTCATCCAAGCTGG--G  241

seq1  GAAAATGCCTTGACCCACTGAGCCATCTCAAGAGTAAAGCTTTTGAAAGG  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCCTTGACCCACTGAGCCATCTCAAGAGTAAAGCTTTTGAAAGG  291

seq1  AAATATAAATATATG-AAAGGATGACTGTCATGTGAGTTTATGTGTATGC  346
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATATAAATATATGAAAAGGATGACTGTCATGTGAGTTTATGTGTATGC  341

seq1  CATTTAGAGTTTCAGATAGGAAAGATCTATGGTACATTCCACAAAATCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAGTTTCAGATAGGAAAGATCTATGGTACATTCCACAAAATCAA  391

seq1  GCCAGGTAAGCCTAGCCAGTTCCTGATGGATGTG-AAGCAGTGCCTTTCC  445
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCAGGTAAGCCTAGCCAGTTCCTGATGGATGTGAAAGCAGTGCCTTTCC  441

seq1  CAGAGAGGATGCAC-AAGGAGGAGAGTGTAGCTCTCCGTGCTCCATCTCT  494
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGATGCACAAAGGAGGAGAGTGTAGCTCTCCGTGCTCCATCTCT  491

seq1  CTCTGGACCTCTTGAATGCGCCTAAAAACAGAACTTTGGAGCATCTGCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACCTCTTGAATGCGCCTAAAAACAGAACTTTGGAGCATCTGCTT  541

seq1  ATGAGTTAGGAATCCAATGCTGCAAACTATGCCTCAAGGTGAAAATAAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAGGAATCCAATGCTGCAAACTATGCCTCAAGGTGAAAATAAAG  591

seq1  ATACCTTGGCAAATCAAAAGCCACACATGGGTCCATCCTAGCTCAAGAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTGGCAAATCAAAAGCCACACATGGGTCCATCCTAGCTCAAGAGT  641

seq1  AGGCTAGACAATTGTGGGACAGGGTATGCAAATCAGAGTTGCTAAAAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGACAATTGTGGGACAGGGTATGCAAATCAGAGTTGCTAAAAATG  691

seq1  CCAGGGTTGGCACCTCCTCACAACACTATTGACCCACAATCTAGTAAAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTGGCACCTCCTCACAACACTATTGACCCACAATCTAGTAAAGC  741

seq1  CATTTTCTTCTATCTGGTTGCTTGTACACTGAGGTACAGAAGAAATGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTCTATCTGGTTGCTTGTACACTGAGGTACAGAAGAAATGAGA  791

seq1  AACTCTGCAGGATAATTCCTCCTGGAGTCAAGATTTTTATCTCGTGTTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCAGGATAATTCCTCCTGGAGTCAAGATTTTTATCTCGTGTTAA  841

seq1  CATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTG  891

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCAGGGTTTTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCAGGGTTTTCC  941

seq1  TGTGTGTATATAAATGCATGCATGTGCAAGTGTGTATGCGTGCACATGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATAAATGCATGCATGTGCAAGTGTGTATGCGTGCACATGGA  991

seq1  GGTCAGAAAACAACCTGTTCTCTGCGCTGTTCCTCGGGAACCACCCATCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAAACAACCTGTTCTCTGCGCTGTTCCTCGGGAACCACCCATCT  1041

seq1  TGGGATTTTGTGCTTGAATTC  1065
      |||||||||||||||||||||
seq2  TGGGATTTTGTGCTTGAATTC  1062