BAC Information

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BAC

Clone NameB6Ng01-111O09
Chromosome17 (Build37)
Map Location 44,516,648 - 44,663,769
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O09.bB6Ng01-111O09.g
ACCDH918112DH918113
length1,1411,091
definitionDH918112|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O09, 5' end.DH918113|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,662,600 - 44,663,769)(44,516,648 - 44,517,732)
sequence
gaattcattcctccatgaccctgataacgccacataaatgctgggcacgc
agatgccatttgattttcctcttctgtcacactctgggtgttgttgtcta
caagtaatttaaaaaaaaaaaaggtgccggtccaagtaactttaaaatgt
tggaagtttctggcaagttcgaatccctagggtgggacagatcagtatca
gccaatgtttccccaaacaataaaaaataaaaacaaaacccatgtgaaat
aatttactagaggtaatttaatatgagaaatcagttacaaaggcttttta
gaagagttgagagggcaacctgggatgaccacaccgtctcaagcaagctg
ttaaagccatttatctggggcctagagagacctacaatgtcactctgttc
caagaaactttgctgtcacttagagactgtttcgatgatgaatccaactg
gctctgggctgcatggggaagacatagccccaggcgaaggtggctatcaa
gcctggcctctgctttctagcccctttcccacctcatgtttgggcttccc
gtgaggcaaactgagcaggaagcaagagagaatcttgataacttgtggga
tcatttctttggataccacagagtgggggaaggtagactgtgaatccaag
gactaactagtgaatgatcagaaagacaaccgtgggtccaccaccttttc
cagcacccctaccttccctgctttaccctataggcttacagagcatgggt
atactcagcttccataaatggtgaccctttggggaggcttgtaatgaatc
atttccactctatctgccatgtttggattcgtccagaaaatattagccac
ctactacaggcactaaactcccacacttgagactgacatttgtacaagca
gagcacctgtgagacttttcctgtggtagcatctgattcgagcacagact
gggacgagaaacaacagatcccttggggagagacttagaagcaatcaagt
tctctgggtactgagttacagcatgagcagcagatgaggaagaaacgaaa
gctgagctcacttaaatgtgtgtcttgggagctggcaaaatgaaactcag
cctgtgagttccatgatagacacttgccttgggttagttgg
gcgagaacactggggccaagccataagaggacccttcctgctaacatgag
actggttgtgtttataaagggttaaatgcattaccaactagcagatgacc
tcctgaagaaagatagggggcggggggaggagggcaatgcttcagaaata
acttgtttaataaaaatactctccccctcacacgtctgacgccatggggc
agtcaggcacaccaccctgccttgggtcaccagacgcaacaccatgaact
tgaaggaaattgcagaaatccatcatggagatttctgagctggttattac
tggctgctttttatctttcaaacggtccctagacttaattgccttgttgt
aatggattaacctctgaggtccacagtagcatttatattgtgttcaaagg
gaagctggcaggcttttgagccagtttggggaggatgcctttatcagacc
aaagctattcctgctcattccagccagcaactttctgcacagggcataag
aatgtccaggggaaaggacagaatgcctctcctttgtctcaaaggcatcc
atacaaccttttaaagcttattacaaaatggacagggagggggcaagggc
catcggactgtggctctatggagagatattaaaagctctggtgttagaga
ggacatgtgtgatgttactcttccctgcaccatgtatctctccatgtttc
ctctagattactcccatcagtaagggcacatctgccaactcccactgtga
tggttatttgggatgtcaacttaactgaattcacaaccacacacctttgg
ctgttgtatcatagatagctttcactgtcaagttgccacggttaaataat
gaacgtagttcatatttaaattttatttatattcaaattcgaattatact
caattatccgtggtttaacttgtcacagtttggagtctcctggtgagtag
tcttgactgaaggtgattttcagttgagacgggcctttggacaggtctgg
tgagggggttgtctgaatagtgaattgaataaggaaggccttagtcttcc
tgggtaccaccatccaggtggatcctgaaatgtatataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44662600_44663769
seq2: B6Ng01-111O09.b_47_1187 (reverse)

seq1  CCAACTAACCC-AGGCAAGTTGTCTATTCATGGGACT-ACAGCCTGGAGT  48
      ||||||||||| ||||||| |||||| |||||| ||| |||| || ||||
seq2  CCAACTAACCCAAGGCAAG-TGTCTA-TCATGGAACTCACAGGCT-GAGT  47

seq1  CTCATCTCTTGCAAGCTCCCAGGACACCACAATTTAGGTGAGCCTCAGCC  98
       |||  | |||| |||||||| |||| ||| ||||| ||||| ||||| |
seq2  TTCA--TTTTGCCAGCTCCCAAGACA-CAC-ATTTAAGTGAG-CTCAG-C  91

seq1  TTCCGTTTCTCTCCTCCATCTGCCTGGCCTCATTGCCTGTAACTCAGTAC  148
      || ||||||| |||| |||||| |||  |||||   ||||||||||||||
seq2  TTTCGTTTCT-TCCT-CATCTG-CTG--CTCAT--GCTGTAACTCAGTAC  134

seq1  CCAGAAGACCTTGAATTTGCCTTCTAAGTCTCTTCCCCAAGGGGATCTGG  198
      |||| ||| |||||  ||| |||||||||||| ||||||| ||||||| |
seq2  CCAG-AGAACTTGA--TTG-CTTCTAAGTCTC-TCCCCAA-GGGATCT-G  177

seq1  TTGTTTTCCTCCGTCCCCAGTCTGTGCCTCGAATCAGATGCCTACCACAG  248
      ||||||  || ||| ||||||||||| ||||||||||||| |||||||||
seq2  TTGTTT--CT-CGT-CCCAGTCTGTG-CTCGAATCAGATG-CTACCACAG  221

seq1  GAAAAGTTCTCACAGGTGCTCTGCTTGTACAAATGTCAGTCTCAAGTGTG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAG-TCTCACAGGTGCTCTGCTTGTACAAATGTCAGTCTCAAGTGTG  270

seq1  GGAGTTTAGTGCCTGTAGTAGGTGGCCTAATATTTTCTGGACGAATCCAA  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGTTTAGTGCCTGTAGTAGGTGG-CTAATATTTTCTGGACGAATCCAA  319

seq1  ACATGGCAGATAGAGTGGAAATGATTCATTACAAGCCTCCCCAAAGGGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGATAGAGTGGAAATGATTCATTACAAGCCTCCCCAAAGGGTC  369

seq1  ACCATTTATGGAAGCTGAGTATACCCATGCTCTGTAAGCCTATAGGGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTATGGAAGCTGAGTATACCCATGCTCTGTAAGCCTATAGGGTAA  419

seq1  AGCAGGGAAGGTAGGGGTGCTGGAAAAGGTGGTGGACCCACGGTTGTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAGGTAGGGGTGCTGGAAAAGGTGGTGGACCCACGGTTGTCTT  469

seq1  TCTGATCATTCACTAGTTAGTCCTTGGATTCACAGTCTACCTTCCCCCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCATTCACTAGTTAGTCCTTGGATTCACAGTCTACCTTCCCCCAC  519

seq1  TCTGTGGTATCCAAAGAAATGATCCCACAAGTTATCAAGATTCTCTCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTATCCAAAGAAATGATCCCACAAGTTATCAAGATTCTCTCTTG  569

seq1  CTTCCTGCTCAGTTTGCCTCACGGGAAGCCCAAACATGAGGTGGGAAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCTCAGTTTGCCTCACGGGAAGCCCAAACATGAGGTGGGAAAGG  619

seq1  GGCTAGAAAGCAGAGGCCAGGCTTGATAGCCACCTTCGCCTGGGGCTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAAAGCAGAGGCCAGGCTTGATAGCCACCTTCGCCTGGGGCTATG  669

seq1  TCTTCCCCATGCAGCCCAGAGCCAGTTGGATTCATCATCGAAACAGTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCATGCAGCCCAGAGCCAGTTGGATTCATCATCGAAACAGTCTC  719

seq1  TAAGTGACAGCAAAGTTTCTTGGAACAGAGTGACATTGTAGGTCTCTCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACAGCAAAGTTTCTTGGAACAGAGTGACATTGTAGGTCTCTCTA  769

seq1  GGCCCCAGATAAATGGCTTTAACAGCTTGCTTGAGACGGTGTGGTCATCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGATAAATGGCTTTAACAGCTTGCTTGAGACGGTGTGGTCATCC  819

seq1  CAGGTTGCCCTCTCAACTCTTCTAAAAAGCCTTTGTAACTGATTTCTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCCCTCTCAACTCTTCTAAAAAGCCTTTGTAACTGATTTCTCAT  869

seq1  ATTAAATTACCTCTAGTAAATTATTTCACATGGGTTTTGTTTTTATTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTACCTCTAGTAAATTATTTCACATGGGTTTTGTTTTTATTTTT  919

seq1  TATTGTTTGGGGAAACATTGGCTGATACTGATCTGTCCCACCCTAGGGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGGGGAAACATTGGCTGATACTGATCTGTCCCACCCTAGGGAT  969

seq1  TCGAACTTGCCAGAAACTTCCAACATTTTAAAGTTACTTGGACCGGCACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTTGCCAGAAACTTCCAACATTTTAAAGTTACTTGGACCGGCACC  1019

seq1  TTTTTTTTTTTTAAATTACTTGTAGACAACAACACCCAGAGTGTGACAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTAAATTACTTGTAGACAACAACACCCAGAGTGTGACAGA  1069

seq1  AGAGGAAAATCAAATGGCATCTGCGTGCCCAGCATTTATGTGGCGTTATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAATCAAATGGCATCTGCGTGCCCAGCATTTATGTGGCGTTATC  1119

seq1  AGGGTCATGGAGGAATGAATTC  1170
      ||||||||||||||||||||||
seq2  AGGGTCATGGAGGAATGAATTC  1141

seq1: chr17_44516648_44517732
seq2: B6Ng01-111O09.g_80_1170

seq1  GCGAGAACACTGGGGCCAAGCCATAAGAGGACCCTTCCTGCTAACATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAACACTGGGGCCAAGCCATAAGAGGACCCTTCCTGCTAACATGAG  50

seq1  ACTGGTTGTGTTTATAAAGGGTTAAATGCATTACCAACTAGCAGATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGTGTTTATAAAGGGTTAAATGCATTACCAACTAGCAGATGACC  100

seq1  TCCTGAAGAAAGATAGGGGGCGGGGGGAGGAGGGCAATGCTTCAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGAAAGATAGGGGGCGGGGGGAGGAGGGCAATGCTTCAGAAATA  150

seq1  ACTTGTTTAATAAAAATACTCTCCCCCTCACACGTCTGACGCCATGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTAATAAAAATACTCTCCCCCTCACACGTCTGACGCCATGGGGC  200

seq1  AGTCAGGCACACCACCCTGCCTTGGGTCACCAGACGCAACACCATGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCACACCACCCTGCCTTGGGTCACCAGACGCAACACCATGAACT  250

seq1  TGAAGGAAATTGCAGAAATCCATCATGGAGATTTCTGAGCTGGTTATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAATTGCAGAAATCCATCATGGAGATTTCTGAGCTGGTTATTAC  300

seq1  TGGCTGCTTTTTATCTTTCAAACGGTCCCTAGACTTAATTGCCTTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTTTTTATCTTTCAAACGGTCCCTAGACTTAATTGCCTTGTTGT  350

seq1  AATGGATTAACCTCTGAGGTCCACAGTAGCATTTATATTGTGTTCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTAACCTCTGAGGTCCACAGTAGCATTTATATTGTGTTCAAAGG  400

seq1  GAAGCTGGCAGGCTTTTGAGCCAGTTTGGGGAGGATGCCTTTATCAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGCAGGCTTTTGAGCCAGTTTGGGGAGGATGCCTTTATCAGACC  450

seq1  AAAGCTATTCCTGCTCATTCCAGCCAGCAACTTTCTGCACAGGGCATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATTCCTGCTCATTCCAGCCAGCAACTTTCTGCACAGGGCATAAG  500

seq1  AATGTCCAGGGGAAAGGACAGAATGCCTCTCCTTTGTCTCAAAGGCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAGGGGAAAGGACAGAATGCCTCTCCTTTGTCTCAAAGGCATCC  550

seq1  ATACAACCTTTTAAAGCTTATTACAAAATGGACAGGGAGGGGGCAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCTTTTAAAGCTTATTACAAAATGGACAGGGAGGGGGCAAGGGC  600

seq1  CATCGGACTGTGGCTCTATGGAGAGATATTAAAAGCTCTGGTGTTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGACTGTGGCTCTATGGAGAGATATTAAAAGCTCTGGTGTTAGAGA  650

seq1  GGACATGTGTGATGTTACTCTTCCCTGCACCATGTATCTCTCCATGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTGTGATGTTACTCTTCCCTGCACCATGTATCTCTCCATGTTTC  700

seq1  CTCTAGATTACTCCCATCAGTAAGGGCACATCTGCCAACTCCCACTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATTACTCCCATCAGTAAGGGCACATCTGCCAACTCCCACTGTGA  750

seq1  TGGTTAATTTGGGATGTCAACTTAACTGAATTCACAACCACACACCTTTG  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTT-ATTTGGGATGTCAACTTAACTGAATTCACAACCACACACCTTTG  799

seq1  GCTG-TGTATCATAGATAGCTTTCACTGTCAAGTTGCCACGGTTAAAT-A  848
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTGTTGTATCATAGATAGCTTTCACTGTCAAGTTGCCACGGTTAAATAA  849

seq1  TGAACGTAGTTCATATTTAAA-TTTATTTATATTCAAATTCGAA-TATAC  896
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TGAACGTAGTTCATATTTAAATTTTATTTATATTCAAATTCGAATTATAC  899

seq1  TCAATAATCCGT-GTTTAACTTGTCACAGTTTGGAGTCTCCT-GTGAGTA  944
      ||||| |||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCAATTATCCGTGGTTTAACTTGTCACAGTTTGGAGTCTCCTGGTGAGTA  949

seq1  GTCTTGACTG-AGGTGATTTTTCAGATGAGACGGGCCTTTGGACATGTCT  993
      |||||||||| |||||| ||||||| ||||||||||||||||||| ||||
seq2  GTCTTGACTGAAGGTGA-TTTTCAGTTGAGACGGGCCTTTGGACAGGTCT  998

seq1  -GTGAGGGGGTTGTCTTGATCATGAATTG-ATAAAGGAGGGCTTAGTCTA  1041
       |||||||||||||||  ||  ||||||| |||| | ||| |||||||| 
seq2  GGTGAGGGGGTTGTCTGAATAGTGAATTGAATAAGGAAGGCCTTAGTCT-  1047

seq1  CCCTGGGTACCACCCATGCAGGTGG-TCCTGAAATGTATAAAAAA  1085
       ||||||||||| |||| ||||||| |||||||||||||| ||||
seq2  TCCTGGGTACCA-CCATCCAGGTGGATCCTGAAATGTATATAAAA  1091