BAC Information

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BAC

Clone NameB6Ng01-114A21
ChromosomeX (Build37)17 (Build37)
Map Location 38,622,859 - 38,623,16617,036,122 - 17,036,944
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114A21.bB6Ng01-114A21.g
ACCDH919678DH919679
length1,113824
definitionDH919678|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A21, 5' end.DH919679|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,622,859 - 38,623,166)(17,036,122 - 17,036,944)
sequence
gaattcttgaaagggcatgaacttgcatgcctgtgtgcacactcatactc
acacacacacacaaagtcattttcataagtacagtaaacacccattagaa
acagtgacataagactgtgtgctccagcaaccccttccctaccatgcaca
catctcacagcatgactcccagaagttctgacattaccagactcacaggt
gagtcttccacacctgacctaactgggatccccatcctgggccccagaag
acacagtaactcccaccctgcgagagatacacacttctagtctgaaacag
tgccctagaacagcaccagtgccctaatccgtctagacccagagtcagct
tgactcccaggatgtctggcacagtcaggcttatagatcaagtgctccag
aaccccccttcccacacccagagacaatgtgaaccaaggaggcccaacat
aatcaggttctcaggagggacaagcaacagtcagagacaacaacttcaca
taacaatagagataacaggatggtgtgaggcaaacacaagaacataagtt
acagaaaccaatggtacttggcaacatcacaacccaattctcccaacaca
gtaaacgctggatactgtaacccatttgaaaagcaagattatgatctaaa
tatcccacctcatggaaatgatagaggatcttaaggaggaaataaatatc
tcccttaaagaaatacaggagattattagaattgggtcaaaccacccatg
gaaggagttacagagacaaagtttggagctaagacgaaaggatggaccgt
ctagagactgtcatacccggggatccatcccatgatcagcctccaatcgc
tgataccattgcatacactagcaagattttgctgaaaggactcagatata
gctgtgtcttgtgaggctatgccggggcctagcaaacacagaagtggagg
ctcacagtcagctacttgatggatacagggccccatgaggagctagagaa
agtacccagagctaaagggatctgcaacctataggtggaacaacatatga
ctacagtaccctttgagatcgtgacttagctgcctattgtatcaagatgg
cctagtccgccat
gaattctagttgtgtgttataaaagctaagaaaattgttaccctaattcc
tgaggaagagtgagtgatagatatgccgttggcattgttcattgaaatgg
ctcactgaataagtttaagtctagctgcctagaaaattcacaaagacaaa
atattctcatttcgaaaatagatataccaacctttatcctaaagcatata
aaataactgaattctacatttactaattcacatatgaattagtaaaattt
caaacgacagctctcacttctatctgtgtttgagtccttcatggctaata
cattcttacactatttaaatcagtgcaaaacttcagtaaaatcactgatt
ttttttttcagctcatttctagaaataaaattcaactgcatcaaacttta
cttacatcttttattctgggttttctagaaggcaatgtctctgtttttat
tatcttaattattcttattctcaatagcttatactttggtataaagtaga
catagttattaagtttaaatcgcatctttatattcttccgtttgtttttg
aaaaaggaaagacagcaatataaaatagcctttaaaaatataatgtatga
ttatggaaaatataccagaaatctgggcttggtgactcatgcctattatc
ccaacactggggaagctaaagcacaaatcacaaatttgaggtcagcctgg
actacattacaagatcttggcttgagaacataaaaaacaaaaataaagaa
aggaaaaagggagaaggagaaaaagcaagagcaaaagatatatatgtgtg
tgtggatatatatatatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38622859_38623166
seq2: B6Ng01-114A21.b_861_1154 (reverse)

seq1  ATGGCCGACTAGGCCAACTTCTGCTAC-ATATGCAGCTAGAGACACGAGC  49
      ||||| |||||||||| ||  || ||| ||| ||||||| || ||||| |
seq2  ATGGCGGACTAGGCCATCT--TGATACAATAGGCAGCTA-AGTCACGATC  47

seq1  TCTGAGGGGTACTGGTTAGTTCATATTGTCGTTCCACCTATAGGGTTGCA  99
      ||  | ||||||||  ||| ||||| ||| |||||||||||| |||||||
seq2  TC-AAAGGGTACTG--TAG-TCATA-TGTTGTTCCACCTATA-GGTTGCA  91

seq1  GAGCCCTTTAGCTCCTTGGTTACTTTCTCTAGCTCCTCCATTGGGGGCCC  149
      || |||||||||||  ||| ||||||||||||||||| |||  |||||||
seq2  GATCCCTTTAGCTC--TGGGTACTTTCTCTAGCTCCT-CAT--GGGGCCC  136

seq1  TGTGATCCATCTAATAGCTGATTGTGAGCATCCACTTCTGTGTTTGCTAG  199
      ||| ||||||| | ||||||| ||||||| ||||||||||||||||||||
seq2  TGT-ATCCATCAAGTAGCTGACTGTGAGCCTCCACTTCTGTGTTTGCTAG  185

seq1  GCCCTGGCATAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAT  249
      |||| ||||||| ||||||||| ||||||||||| | |||||||||||| 
seq2  GCCCCGGCATAGCCTCACAAGACACAGCTATATCTGAGTCCTTTCAGCAA  235

seq1  AATCTTGCTAGTGTATGCAATGATGTCAGCGTTTGGAAGCTGATCATGGG  299
      |||||||||||||||||||||| | |||||| ||||| ||||||||||||
seq2  AATCTTGCTAGTGTATGCAATGGTATCAGCGATTGGAGGCTGATCATGGG  285

seq1  GTGGATCCC  308
       ||||||||
seq2  ATGGATCCC  294

seq1: chr17_17036122_17036944
seq2: B6Ng01-114A21.g_65_888

seq1  GAATTCTAGTTGTGTGTTATAAAAGCTAAGAAAATTGTTACCCTAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTGTGTGTTATAAAAGCTAAGAAAATTGTTACCCTAATTCC  50

seq1  TGAGGAAGAGTGAGTGATAGATATGCCGTTGGCATTGTTCATTGAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGAGTGAGTGATAGATATGCCGTTGGCATTGTTCATTGAAATGG  100

seq1  CTCACTGAATAAGTTTAAGTCTAGCTGCCTAGAAAATTCACAAAGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAATAAGTTTAAGTCTAGCTGCCTAGAAAATTCACAAAGACAAA  150

seq1  ATATTCTCATTTCGAAAATAGATATACCAACCTTTATCCTAAAGCATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCATTTCGAAAATAGATATACCAACCTTTATCCTAAAGCATATA  200

seq1  AAATAACTGAATTCTACATTTACTAATTCACATATGAATTAGTAAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGAATTCTACATTTACTAATTCACATATGAATTAGTAAAATTT  250

seq1  CAAACGACAGCTCTCACTTCTATCTGTGTTTGAGTCCTTCATGGCTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGACAGCTCTCACTTCTATCTGTGTTTGAGTCCTTCATGGCTAATA  300

seq1  CATTCTTACACTATTTAAATCAGTGCAAAACTTCAGTAAAATCACTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTACACTATTTAAATCAGTGCAAAACTTCAGTAAAATCACTGATT  350

seq1  TTTTTTTTCAGCTCATTTCTAGAAATAAAATTCAACTGCATCAAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAGCTCATTTCTAGAAATAAAATTCAACTGCATCAAACTTTA  400

seq1  CTTACATCTTTTATTCTGGGTTTTCTAGAAGGCAATGTCTCTGTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATCTTTTATTCTGGGTTTTCTAGAAGGCAATGTCTCTGTTTTTAT  450

seq1  TATCTTAATTATTCTTATTCTCAATAGCTTATACTTTGGTATAAAGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAATTATTCTTATTCTCAATAGCTTATACTTTGGTATAAAGTAGA  500

seq1  CATAGTTATTAAGTTTAAATCGCATCTTTATATTCTTCCGTTTGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTATTAAGTTTAAATCGCATCTTTATATTCTTCCGTTTGTTTTTG  550

seq1  AAAAAGGAAAGACAGCAATATAAAATAGCCTTTAAAAATATAATGTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAGACAGCAATATAAAATAGCCTTTAAAAATATAATGTATGA  600

seq1  TTATGGAAAATATACCAGAAATCTGGGCTTGGTGACTCATGCCTATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAAAATATACCAGAAATCTGGGCTTGGTGACTCATGCCTATTATC  650

seq1  CCAACACTGGGGAAGCTAAAGCACAAATCACAAATTTGAGGTCAGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGGGGAAGCTAAAGCACAAATCACAAATTTGAGGTCAGCCTGG  700

seq1  ACTACATTACAAGATCTTGGCTTGAGAACAT-AAAAACAAAAATAAAGAA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTACATTACAAGATCTTGGCTTGAGAACATAAAAAACAAAAATAAAGAA  750

seq1  AGGAAAAAGGGAGAAGGAGAAAAAGCAAGAGCAAAAGATATATATGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGGGAGAAGGAGAAAAAGCAAGAGCAAAAGATATATATGTGTG  800

seq1  TGTGGATATATATATATGTGTGTG  823
      ||||||||||||||||||||||||
seq2  TGTGGATATATATATATGTGTGTG  824