BAC Information

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BAC

Clone NameB6Ng01-114A22
Chromosome17 (Build37)15 (Build37)
Map Location 39,831,810 - 39,832,32010,881,416 - 10,882,524
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043297, LOC100043300, EG668200
Downstream geneLOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114A22.bB6Ng01-114A22.g
ACCDH919680DH919681
length1,1261,108
definitionDH919680|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A22, 5' end.DH919681|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,831,810 - 39,832,320)(10,881,416 - 10,882,524)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagattctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatctgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggtattttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttctttagagacttgaagtttttatcata
cagatctttcacttcgttagttagagtaactccgagatattttatattat
tgtgactattgagaagggttgtggtttcctaatttctttctcagcctggt
ttattctttgtggtaaggagaaaggccatgacttgtttggaggttaattt
ttaattccagcttactttcaccggaagcctggttatcaggtttaagggag
tttctctggtggggaatttttagggg
gaattctgagtacctggccccagaatgggttgatctgggctaggtcctct
acctcagggtgcggaagcgcctctggtctcaggggttttaggtctgtaga
agtgttattatccacagtcccagttttagcttggctctgctctctcactt
tctccctcctggagccgctacggccagtctgctggtggctctgcactatc
ctggccaccgctttattagctcttctgctcacctccatgtattcatcttg
acacaggcaaaatgggaggaaaagcaaaggcagcaggtgccaccagatgc
gctgcctcccgagcatggctcggcaaatcggcaaatcgacaagagtctcg
cagggaagcttgacaggggctggaggtaccgtggtcgcctcaggcaaatg
ccaggtttggagatgagagctgcagccggctgtgtggttttatactcttt
ggtgtgtaataaataaggctgcagtcatgccagagtgacagcggctctcc
tcccagacagagcagctctcattcatcacattcctgcaccgcaggcaaga
cagtctgtgtgcacggcgtccagttggtggggttcataaatgtctcacct
tggcatgttattttgtgtaagagtggagaaaatgtacacagccggctgga
aacagagtgtgtgtgtccagtggcttgccttcgtgattagacgtggaaag
gctgtgcctttgtggtctaaaacgactcttggaaaaacctaccattgagc
ttgccagggaatgcggctcagactgtatcagttcctgcaatcacagcagg
atcccattcaagggccatggagggaggtcttgcttttgcacggtgcagat
cacaattttgcactttgggtcactgcaagcaactcattctcccttccaga
taccagcagcagcctacagatggtgactgggaaagactgacctgagttca
gggttaaaggctgacttgaccaggatagtccccatgctaagctcaatatt
tcctctttgcgtctctacgagcacattagaaaccagatgtttttgcatct
aaggttctgctagaatggaaatacacttactttcttggtaagagaaactc
tctctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39831810_39832320
seq2: B6Ng01-114A22.b_652_1175 (reverse)

seq1  CCCTAAAAATT--CCACCAGAG-AACTCC--TAAACCTGATAAACA-GCT  44
      |||||||||||  ||||||||| ||||||  |||||||||||| || |||
seq2  CCCTAAAAATTCCCCACCAGAGAAACTCCCTTAAACCTGATAACCAGGCT  50

seq1  T-CGGTG-AAGT-AGCTGG-ATATAAAATTAAC--TCAAAAAAGTCAATG  88
      | ||||| |||| |||||| ||  |||||||||   |||| ||||| |||
seq2  TCCGGTGAAAGTAAGCTGGAATTAAAAATTAACCTCCAAACAAGTC-ATG  99

seq1  GCCTTTCTC--TA-CACAAAGAATAAA-CAGGCTGAGAAAGAAATTAGGG  134
      |||||||||  || ||||||||||||| ||||||||||||||||||||| 
seq2  GCCTTTCTCCTTACCACAAAGAATAAACCAGGCTGAGAAAGAAATTAGGA  149

seq1  AAACAACACCCTTTTCAATAGTCACAAATAATATAAAATATCTCGGCGTG  184
      || ||  |||||| ||||||||||| |||||||||||||||||||| || 
seq2  AACCACAACCCTTCTCAATAGTCAC-AATAATATAAAATATCTCGGAGTT  198

seq1  ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT  234
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACTAACGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCT  248

seq1  GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAATAATCTCCCATGC  284
       ||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAA-GATCTCCCATGC  297

seq1  TTATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC  334
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC  347

seq1  AATCTACAGATTCAATGCAATCACCATCAAAATTCCAACACAATTCTTCA  384
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA  397

seq1  ACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCT  434
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAATACCT  447

seq1  AGGATAGCAAAAACTCTTCACAAGGATAAAAGAACCTCTGGTGGAATCAC  484
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCAC  497

seq1  CATGCCTAACCTAAAGCTTTACTACTG  511
      ||||||| ||||||||||||||||| |
seq2  CATGCCTGACCTAAAGCTTTACTACAG  524

seq1: chr15_10881416_10882524
seq2: B6Ng01-114A22.g_66_1173 (reverse)

seq1  GCCAGAG-GAG--TCTCTTAACAAGAAAGTAGGTTGTATTTCCA-TCTAG  46
      ||||||| |||  ||||||| |||||||||| | |||||||||| |||||
seq2  GCCAGAGAGAGTTTCTCTTACCAAGAAAGTAAG-TGTATTTCCATTCTAG  49

seq1  CAAGAACTTAGATGCAAGAAACATCTGGTTTCTAATGTTGGCTCGTAGAG  96
      ||  | ||||||||||| ||||||||||||||||||||  ||||||||||
seq2  CAGAACCTTAGATGCAA-AAACATCTGGTTTCTAATGT--GCTCGTAGAG  96

seq1  ACGCAAAG-GAGAATATGGAGCTTAGCATGGGGGAACTATCTTGGTCAAA  145
      |||||||| |  ||||| |||||||||||||||  |||||| ||||| ||
seq2  ACGCAAAGAGGAAATATTGAGCTTAGCATGGGG--ACTATCCTGGTC-AA  143

seq1  GTCAGCCTTTACCCTTGAACTCAGGTCAGTCTTTCCCAGTCACCATCTGT  195
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTTAACCCTGAACTCAGGTCAGTCTTTCCCAGTCACCATCTGT  193

seq1  AGGCTGCTGCTGGTATCTGGAAGGGAGAATGAGTTGCTTGCAGTGACCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTGCTGGTATCTGGAAGGGAGAATGAGTTGCTTGCAGTGACCCA  243

seq1  AAGTGCAAAATTGTGATCTGCACCGTGCAAAAGCAAGACCTCCCTCCATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAAATTGTGATCTGCACCGTGCAAAAGCAAGACCTCCCTCCATG  293

seq1  G-CCTTGAATGGGATCCTGCTGTGATTGCAGGAACTGATACAGTCTGAGC  344
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGAATGGGATCCTGCTGTGATTGCAGGAACTGATACAGTCTGAGC  343

seq1  CGCATTCCCTGGCAAGCTCAATGGTAGGTTTTTCCAAGAGTCGTTTTAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCCCTGGCAAGCTCAATGGTAGGTTTTTCCAAGAGTCGTTTTAGA  393

seq1  CCACAAAGGCACAGCCTTTCCACGTCTAATCACGAAGGCAAGCCACTGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGCACAGCCTTTCCACGTCTAATCACGAAGGCAAGCCACTGGA  443

seq1  CACACACACTCTGTTTCCAGCCGGCTGTGTACATTTTCTCCACTCTTACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTCTGTTTCCAGCCGGCTGTGTACATTTTCTCCACTCTTACA  493

seq1  CAAAATAACATGCCAAGGTGAGACATTTATGAACCCCACCAACTGGACGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACATGCCAAGGTGAGACATTTATGAACCCCACCAACTGGACGC  543

seq1  CGTGCACACAGACTGTCTTGCCTGCGGTGCAGGAATGTGATGAATGAGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACACAGACTGTCTTGCCTGCGGTGCAGGAATGTGATGAATGAGAG  593

seq1  CTGCTCTGTCTGGGAGGAGAGCCGCTGTCACTCTGGCATGACTGCAGCCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTCTGGGAGGAGAGCCGCTGTCACTCTGGCATGACTGCAGCCT  643

seq1  TATTTATTACACACCAAAGAGTATAAAACCACACAGCCGGCTGCAGCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTACACACCAAAGAGTATAAAACCACACAGCCGGCTGCAGCTCT  693

seq1  CATCTCCAAACCTGGCATTTGCCTGAGGCGACCACGGTACCTCCAGCCCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAAACCTGGCATTTGCCTGAGGCGACCACGGTACCTCCAGCCCC  743

seq1  TGTCAAGCTTCCCTGCGAGACTCTTGTCGATTTGCCGATTTGCCGAGCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCTTCCCTGCGAGACTCTTGTCGATTTGCCGATTTGCCGAGCCA  793

seq1  TGCTCGGGAGGCAGCGCATCTGGTGGCACCTGCTGCCTTTGCTTTTCCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGGGAGGCAGCGCATCTGGTGGCACCTGCTGCCTTTGCTTTTCCTC  843

seq1  CCATTTTGCCTGTGTCAAGATGAATACATGGAGGTGAGCAGAAGAGCTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGCCTGTGTCAAGATGAATACATGGAGGTGAGCAGAAGAGCTAA  893

seq1  TAAAGCGGTGGCCAGGATAGTGCAGAGCCACCAGCAGACTGGCCGTAGCG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGGTGGCCAGGATAGTGCAGAGCCACCAGCAGACTGGCCGTAGCG  943

seq1  GCTCCAGGAGGGAGAAAGTGAGAGAGCAGAGCCAAGCTAAAACTGGGACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGGAGGGAGAAAGTGAGAGAGCAGAGCCAAGCTAAAACTGGGACT  993

seq1  GTGGATAATAACACTTCTACAGACCTAAAACCCCTGAGACCAGAGGCGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAATAACACTTCTACAGACCTAAAACCCCTGAGACCAGAGGCGCT  1043

seq1  TCCGCACCCTGAGGTAGAGGACCTAGCCCAGATCAACCCATTCTGGGGCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCACCCTGAGGTAGAGGACCTAGCCCAGATCAACCCATTCTGGGGCC  1093

seq1  AGGTACTCAGAATTC  1109
      |||||||||||||||
seq2  AGGTACTCAGAATTC  1108