BAC Information

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BAC

Clone NameB6Ng01-114G16
Chromosome17 (Build37)
Map Location 83,833,064 - 83,974,568
singlet/doubletdoublet
Overlap geneEml4, Cox7a2l
Upstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226
Downstream geneKcng3, Mta3, Haao, Zfp36l2, Thada, Plekhh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114G16.bB6Ng01-114G16.g
ACCDH919941DH919942
length3051,155
definitionDH919941|Mus musculus domesticus DNA, BAC clone: B6Ng01-114G16, 5' end.DH919942|Mus musculus domesticus DNA, BAC clone: B6Ng01-114G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,974,264 - 83,974,568)(83,833,064 - 83,834,235)
sequence
tgtcaaagtaaccttatagtaaaattagccttgtgtggaaagccttattg
caaagatattggagaatttaatttaaagtactttttctagaattcagact
cgggtatttggggtcatatacaaacatttggaagagttctcatttagtta
tgggagggatgtagccatgaatgtctctgcagtttgatgtctgtatttat
gttgagtacgttgtacctcagcttccttcctaggactgtcatatgataaa
gtccataggtggatgaatggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtga
gaattctaaaatatcattactttcatactactggtcagagagatggcttg
gtggttaagagcacctgttgttcttacagaggacctgggtttggttcctg
tcacatatggcaagttatgaccacctagagctccagttaccagggatcca
gtgccctcttctgatctcccaggacttctgtacacacatggttcacaggt
agacacttgggtcattagctggttctaggaagtcttccaaaaaggatctt
tgtcagtttctactataaaaccagagttcctttctccagcatctctttgg
gttttagctgcatggtttatagacagaattgccattaaagaaacagctga
aaatgagtagatccctgggtttgtagcagtttagtgtcatcacgcttttc
tgtattttgcttatgtttgagactctaatttagaagaaactattagttct
aaaaattgtaaactagaaaaaaaattttttttgaaatgatatcttagata
acctttctggtctttttgttttggtttggtttggtttggtttttcaagac
atggtttctctgtgtagtcctggctgtcctggaactcactttgtagacca
ggctggcctcgaactcagaaatccatctgcctctgcctctgcctcccaag
tgctgggattaaaggcgtgtgccaccactgccctgcctttctggtcttaa
ggttagtgtgctaccagatggccaataactcctgtcctcttgtttcagcc
tccaaaatgtggggttacaggcatccaccaccatgctcagggatctgaat
cgtttatttttattctatttatatgcattgatgtttttgcctgtttcata
catgtatgtctgtataaagatgtcagatcttggagttagagacagttgtg
agctgtcatgtggatgctgggaattgaactcaggtctctggaagacagcc
agtgagtgctcttaacgctgagccatctctcagcacatgtcagggtctaa
agtagacatctgtggggagagatgctgaagctgttcatccatccataatt
tcagaggtctcagcatagcatccataacacgagtgactggccatctacgt
acccaagtctactgttctaacgccttttcggttaatctctttaagttagg
gaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83974264_83974568
seq2: B6Ng01-114G16.b_54_358 (reverse)

seq1  TCACACACACACACACACACACACACACACACACGCCATTCATCCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACGCCATTCATCCACCTA  50

seq1  TGGACTTTATCATATGACAGTCCTAGGAAGGAAGCTGAGGTACAACGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTATCATATGACAGTCCTAGGAAGGAAGCTGAGGTACAACGTAC  100

seq1  TCAACATAAATACAGACATCAAACTGCAGAGACATTCATGGCTACATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATAAATACAGACATCAAACTGCAGAGACATTCATGGCTACATCCC  150

seq1  TCCCATAACTAAATGAGAACTCTTCCAAATGTTTGTATATGACCCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAACTAAATGAGAACTCTTCCAAATGTTTGTATATGACCCCAAAT  200

seq1  ACCCGAGTCTGAATTCTAGAAAAAGTACTTTAAATTAAATTCTCCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGTCTGAATTCTAGAAAAAGTACTTTAAATTAAATTCTCCAATAT  250

seq1  CTTTGCAATAAGGCTTTCCACACAAGGCTAATTTTACTATAAGGTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAATAAGGCTTTCCACACAAGGCTAATTTTACTATAAGGTTACTT  300

seq1  TGACA  305
      |||||
seq2  TGACA  305

seq1: chr17_83833064_83834235
seq2: B6Ng01-114G16.g_68_1222

seq1  GAATTCTAAAATATCATTACTTTCATACTACTGGTCAGAGAGATGGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATATCATTACTTTCATACTACTGGTCAGAGAGATGGCTTG  50

seq1  GTGGTTAAGAGCACCTGTTGTTCTTACAGAGGACCTGGGTTTGGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGCACCTGTTGTTCTTACAGAGGACCTGGGTTTGGTTCCTG  100

seq1  TCACATATGGCAAGTTATGACCACCTAGAGCTCCAGTTACCAGGGATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATGGCAAGTTATGACCACCTAGAGCTCCAGTTACCAGGGATCCA  150

seq1  GTGCCCTCTTCTGATCTCCCAGGACTTCTGTACACACATGGTTCACAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCTTCTGATCTCCCAGGACTTCTGTACACACATGGTTCACAGGT  200

seq1  AGACACTTGGGTCATTAGCTGGTTCTAGGAAGTCTTCCAAAAAGGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTGGGTCATTAGCTGGTTCTAGGAAGTCTTCCAAAAAGGATCTT  250

seq1  TGTCAGTTTCTACTATAAAACCAGAGTTCCTTTCTCCAGCATCTCTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTTCTACTATAAAACCAGAGTTCCTTTCTCCAGCATCTCTTTGG  300

seq1  GTTTTAGCTGCATGGTTTATAGACAGAATTGCCATTAAAGAAACAGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGCTGCATGGTTTATAGACAGAATTGCCATTAAAGAAACAGCTGA  350

seq1  AAATGAGTAGATCCCTGGGTTTGTAGCAGTTTAGTGTCATCACGCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTAGATCCCTGGGTTTGTAGCAGTTTAGTGTCATCACGCTTTTC  400

seq1  TGTATTTTGCTTATGTTTGAGACTCTAATTTAGAAGAAACTATTAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTGCTTATGTTTGAGACTCTAATTTAGAAGAAACTATTAGTTCT  450

seq1  AAAAATTGTAAACTAGAAAAAAAATTTTTTTTGAAATGATATCTTAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTAAACTAGAAAAAAAATTTTTTTTGAAATGATATCTTAGATA  500

seq1  ACCTTTCTGGTCTTTTTGTTTTGGTTTGGTTTGGTTTGGTTTTTCAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTGGTCTTTTTGTTTTGGTTTGGTTTGGTTTGGTTTTTCAAGAC  550

seq1  ATGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCA  600

seq1  GGCTGGCCTCGAACTCAGAAATCCATCTGCCTCTGCCTCTGCCTCCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCGAACTCAGAAATCCATCTGCCTCTGCCTCTGCCTCCCAAG  650

seq1  TGCTGGGATTAAAGGCGTGTGCCACCACTGCCCTGCCTTTCTGGTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCGTGTGCCACCACTGCCCTGCCTTTCTGGTCTTAA  700

seq1  GGTTAGTGTGCTACCAGATGGCCAATAACTCCTGTCCTCTTGTTTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTGTGCTACCAGATGGCCAATAACTCCTGTCCTCTTGTTTCAGCC  750

seq1  TCCAAAATGTGGGGTTACAGGCATCCACCACCATGCTCAGGGATCTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATGTGGGGTTACAGGCATCCACCACCATGCTCAGGGATCTGAAT  800

seq1  CGTTTATTTTTATTCTATTTATATGCATTGATGTTTTTGCCTGTTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTATTTTTATTCTATTTATATGCATTGATGTTTTTGCCTGTTTCATA  850

seq1  CATGTATGTCTGTATAAAGATGTCAGATCTTGGAGTTAGAGACAGTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTCTGTATAAAGATGTCAGATCTTGGAGTTAGAGACAGTTGTG  900

seq1  AGCTGTCATGTGGATGCTGGGAATTGAACTCAGGTCCTCTGGAAGAACAG  950
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AGCTGTCATGTGGATGCTGGGAATTGAACTCAGGT-CTCTGGAAG-ACAG  948

seq1  CCAGTGAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCACATGTTCAGGG  1000
      ||||||||||||||||| ||||||||||||||| ||||||||| ||||||
seq2  CCAGTGAGTGCTCTTAA-CGCTGAGCCATCTCT-CAGCACATG-TCAGGG  995

seq1  TTCTTAAAGTAGACATCTGTGGGAGAAGATGCTGAAGCTG-TCAGCACAC  1049
      |   |||||||||||||||||||   |||||||||||||| ||| |   |
seq2  T--CTAAAGTAGACATCTGTGGGGAGAGATGCTGAAGCTGTTCATCCATC  1043

seq1  TAGAAATTCAGAGGTCTTCAGCAGTAGCACCCATAACACGAGTGACT-GC  1098
       | || |||||||||| |||||| ||||| ||||||||||||||||| ||
seq2  CATAATTTCAGAGGTC-TCAGCA-TAGCATCCATAACACGAGTGACTGGC  1091

seq1  AGTCTAAACGTACGC-AGTCTACTGTTTCTAAAAAGGCCTTTTTCTGTTT  1147
        |||  |||||| | ||||||||| ||||   || ||| ||||| ||| 
seq2  CATCT--ACGTACCCAAGTCTACTG-TTCT---AACGCC-TTTTCGGTT-  1133

seq1  TTAAATCTCTTTAAGTCTAGGAATA  1172
         |||||||||||||   ||||||
seq2  ---AATCTCTTTAAGTTAGGGAATA  1155