BAC Information

Click to search

BAC

Clone NameB6Ng01-115P24
Chromosome13 (Build37)17 (Build37)
Map Location 77,588,398 - 77,588,53253,700,681 - 53,701,263
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115P24.bB6Ng01-115P24.g
ACCDH921113DH921114
length154924
definitionDH921113|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P24, 5' end.DH921114|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,588,398 - 77,588,532)(53,700,681 - 53,701,263)
sequence
ctcttaggtcaaggccaacctggggtacatgagttccaagccagcctaga
ctacagaataataccttgctttgatggggacacaagagggaagaagggag
ggagaaagggaaggatgtggagagagagagagagaaagagagagagagag
agag
gaattccaggacagcttgttctgcatagcaagactgcttaaaaactaaaa
caaatttattaaattaacttttcagatcatttatttatttttattttatg
tacattggtattctacctgcttgcatgtctgtgtgagggtgccagatccc
ctggaactggagtagccccattaaatacatttttaaaagaagaaagactt
tctgagcatggcgatacatgactgtaatcctgatgactagaagggtcctg
atgtcctggcttggagaatataagaggaaaagaaaaagaagaccatgcca
cagagatggatatgtaattcagacacacagaggacgaaggaccatgtgac
aggaagagtgaatgtagaggtttgctgtgcattgtaatgctaaattctgt
acccaaagggaaagttgcctacatgacaattcttatatttacaagctttt
gtcctgcaaaccttgttccttgatgtaaaacaattggttaaataaaactg
cccacaaccagttactagagggttttgaattacctggttaggggtgaata
ggagagtggggagacctggtggagaagaagaaagaagagaggaggctggc
aatgaggggagatgggcgatgagcacagcacgtggccaggagaaacaagg
atctgggatatacagatgggaggtagccaggccaacagaggtagccaggc
caacagttagaaaagcagattaggggttaccctctagaaattgtcaaagc
caaataaaataaccatagtctgagtttcgtttatttttaagctagttcag
ggataagcttaaatttggttgtactacagagacttttagaggaagagttt
aaaggaaacctattattttcagaggcgagcctaagtgtttagggagctca
tgcttacattgagatcagacgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77588398_77588532
seq2: B6Ng01-115P24.b_143_204 (reverse)

seq1  TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTC  50
      ||||||||||||||||||||||||||||||||||   | | ||| | || 
seq2  TCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTC-CACATCCTTCCCTTT  49

seq1  TTTCTTTCTTTCTTTCTCTTTTCTTCCTTTCTTTCCCTCCCTTCCTTCTT  100
       | | | | ||||                                     
seq2  CTCCCTCCCTTCT-------------------------------------  62

seq1  TTCTTCCTTCCTTCCTTCATTTCTCCCTCCCTTCT  135
                                         
seq2  -----------------------------------  62

seq1: chr17_53700681_53701263
seq2: B6Ng01-115P24.g_404_991 (reverse)

seq1  CAGCGTCTGTATCTC-ATGTAAGCATGTGCTCCCT-AACACTTTAGGCTT  48
      ||||||||| ||||| ||||||||||| ||||||| ||||| |||||| |
seq2  CAGCGTCTG-ATCTCAATGTAAGCATGAGCTCCCTAAACAC-TTAGGC-T  47

seq1  CGCCTCTG-AAATATTGGGTTTCCTT--AACTCTTCCTCT-AAAGTCTCT  94
      |||||||| ||||| | |||||||||  |||||||||||| |||||||||
seq2  CGCCTCTGAAAATAATAGGTTTCCTTTAAACTCTTCCTCTAAAAGTCTCT  97

seq1  GTAGTACAACC-AATTTAAGCTTATCCCTG-ACTAGCTTAAAAATAAACG  142
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  GTAGTACAACCAAATTTAAGCTTATCCCTGAACTAGCTTAAAAATAAACG  147

seq1  AAACTCAGACTATGGTTATTTTATTTGGCTTTGACAATTTCTAGAGGGTA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGACTATGGTTATTTTATTTGGCTTTGACAATTTCTAGAGGGTA  197

seq1  ACCCCTAATCTGCTTTTCTAACTGTTGGCCTGGCTACCTCTGTTGGCCTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAATCTGCTTTTCTAACTGTTGGCCTGGCTACCTCTGTTGGCCTG  247

seq1  GCTACCTCCCATCTGTATATCCCAGATCCTTGTTTCTCCTGGCCACGTGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCCCATCTGTATATCCCAGATCCTTGTTTCTCCTGGCCACGTGC  297

seq1  TGTGCTCATCGCCCATCTCCCCTCATTGCCAGCCTCCTCTCTTCTTTCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCATCGCCCATCTCCCCTCATTGCCAGCCTCCTCTCTTCTTTCTT  347

seq1  CTTCTCCACCAGGTCTCCCCACTCTCCTATTCACCCCTAACCAGGTAATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCACCAGGTCTCCCCACTCTCCTATTCACCCCTAACCAGGTAATT  397

seq1  CAAAACCCTCTAGTAACTGGTTGTGGGCAGTTTTATTTAACCAATTGTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCTCTAGTAACTGGTTGTGGGCAGTTTTATTTAACCAATTGTTT  447

seq1  TACATCAAGGAACAAGGTTTGCAGGACAAAAGCTTGTAAATATAAGAATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAGGAACAAGGTTTGCAGGACAAAAGCTTGTAAATATAAGAATT  497

seq1  GTCATGTAGGCAACTTTCCCTTTGGGTACAGAATTTAGCATTACAATGCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTAGGCAACTTTCCCTTTGGGTACAGAATTTAGCATTACAATGCA  547

seq1  CAGCAAACCTCTACATTCACTCTTCCTGTCACATGGTCCTT  583
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACCTCTACATTCACTCTTCCTGTCACATGGTCCTT  588