BAC Information

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BAC

Clone NameB6Ng01-116H15
Chromosome17 (Build37)
Map Location 31,434,167 - 31,630,660
singlet/doubletdoublet
Overlap geneEG667056, Slc37a1, Pde9a
Upstream geneBtbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2
Downstream geneWdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116H15.bB6Ng01-116H15.g
ACCDH921466DH921467
length1,083783
definitionDH921466|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H15, 5' end.DH921467|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,434,167 - 31,435,251)(31,629,883 - 31,630,660)
sequence
gaattctgactccttgtatttaagctcaggacaagtgaaaataacagttt
ctgtttatctcccacggccaatggagcctttaaacgcttagaaagggctc
gattagaggagttagtgtttgtcttggtttaaaacaaaactcttgaagct
tttggagggagtttggttcccaggtttgcccttttataaagtgccatcat
tttgacaggttgccttaggctgccttgatgttgcctgtgtgctaaagact
ggaaaaccccccttggggcattgctcttgcttttgctaactcccacccac
tcctgagtctccttgaagggttgatgggttctgggtagctcagagcccgg
tagctgggaggatcgtgggtgtgtctgtccgtccctcaactcttgcttgg
ctgggctctctgtgtgctcctgagcctggtcgggtgctgcctcaccatgg
aaaaactcctaattgctctcctttccctgtccaatgatcacactgccttc
ctgtccttttctctaatgggctgaaattcactgggagtttctaagaggtg
acatttaaaaactactttaactactttccttgggctagatgccaaggcct
gtcagcagagccacgtgctccccttccgttcagggataggcaggaggaag
tgtacttgtgcctgagaaggcatgccccacccccactcccaccccctagg
aaaatgaaacgcctggaattggcctaggtatgaagcccacctagctgggc
tagcctcatctcttcttagaacggcggttctcaacctttcttaaatgctg
tgacccttaaatacaattcctcatgttattttcattgctccttcatagct
gtaattttgctactgaaatgcatggtaggtaatgtaaatatctgatctgc
aggatatctgatatgcacccctgttgaggcggagactacaggctgagaac
tgccatcttaaagggaaagctatgtcttggactcgagaggctgtgtcagt
agccttcatgacctggaaattttgtttggtttgcttggttgttgtgtttt
tcaggacaggttttttctgatatagcctggctg
gaattctccctccaatcctagatcttgaagattttctcaaaattttccaa
aacgctcctggttttgtttcaccttttttgtttgtttttcctttttttct
ttctttctttctccccccccccccccccccgagacagggtttctctgtat
agccctggctgtcctggaactcactttgtagaccaggctggcctcgaact
tagaaatctgcctgcctcttgtttgtttttcaagacaggatttctctgta
taacaaaccaggctagcctcaaacccccaaagatctgcctcccaaggcta
gaattaaaaccatctgcatcaccacacctggcttttattccagttttaag
ttcacagtctactctgatcagatgtgtagctctgagctcctgtcttgaca
gcccatttaattgcttctgttcgtgtactggctagttttgtgtcaacttg
acacagctggagttatcacagagaaaggagcttcagttgaggaaatgcct
ccatgagatccaactgtaaggcattttctcaattagtgttcaagggggag
aggcccctttgtgggtggaaccatctctgagctggttgtcttggttctat
aagagcaagccaggggaagcaaaccagtaaaagaacatccctccatggcc
tctgcatcagctcctgcttcctgacctgcttgagtttccagtcctgactt
ccttggtgatgaacagcagtatgggagtgtaagccgaataaaccattttc
ctccccaacttgcttcttgggtcatggtgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_31434167_31435251
seq2: B6Ng01-116H15.b_39_1121

seq1  GAATTCTGACTCCTTGTATTTAAGCTCAGGACAAGTGAAAATAACAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACTCCTTGTATTTAAGCTCAGGACAAGTGAAAATAACAGTTT  50

seq1  CTGTTTATCTCCCACGGCCAATGGAGCCTTTAAACGCTTAGAAAGGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATCTCCCACGGCCAATGGAGCCTTTAAACGCTTAGAAAGGGCTC  100

seq1  GATTAGAGGAGTTAGTGTTTGTCTTGGTTTAAAACAAAACTCTTGAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAGGAGTTAGTGTTTGTCTTGGTTTAAAACAAAACTCTTGAAGCT  150

seq1  TTTGGAGGGAGTTTGGTTCCCAGGTTTGCCCTTTTATAAAGTGCCATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGGAGTTTGGTTCCCAGGTTTGCCCTTTTATAAAGTGCCATCAT  200

seq1  TTTGACAGGTTGCCTTAGGCTGCCTTGATGTTGCCTGTGTGCTAAAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGGTTGCCTTAGGCTGCCTTGATGTTGCCTGTGTGCTAAAGACT  250

seq1  GGAAAACCCCCCTTGGGGCATTGCTCTTGCTTTTGCTAACTCCCACCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCCCCCTTGGGGCATTGCTCTTGCTTTTGCTAACTCCCACCCAC  300

seq1  TCCTGAGTCTCCTTGAAGGGTTGATGGGTTCTGGGTAGCTCAGAGCCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTCTCCTTGAAGGGTTGATGGGTTCTGGGTAGCTCAGAGCCCGG  350

seq1  TAGCTGGGAGGATCGTGGGTGTGTCTGTCCGTCCCTCAACTCTTGCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGAGGATCGTGGGTGTGTCTGTCCGTCCCTCAACTCTTGCTTGG  400

seq1  CTGGGCTCTCTGTGTGCTCCTGAGCCTGGTCGGGTGCTGCCTCACCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTCTGTGTGCTCCTGAGCCTGGTCGGGTGCTGCCTCACCATGG  450

seq1  AAAAACTCCTAATTGCTCTCCTTTCCCTGTCCAATGATCACACTGCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCCTAATTGCTCTCCTTTCCCTGTCCAATGATCACACTGCCTTC  500

seq1  CTGTCCTTTTCTCTAATGGGCTGAAATTCACTGGGAGTTTCTAAGAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTTCTCTAATGGGCTGAAATTCACTGGGAGTTTCTAAGAGGTG  550

seq1  ACATTTAAAAACTACTTTAACTACTTTCCTTGGGCTAGATGCCAAGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAAACTACTTTAACTACTTTCCTTGGGCTAGATGCCAAGGCCT  600

seq1  GTCAGCAGAGCCACGTGCTCCCCTTCCGTTCAGGGATAGGCAGGAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGAGCCACGTGCTCCCCTTCCGTTCAGGGATAGGCAGGAGGAAG  650

seq1  TGTACTTGTGCCTGAGAAGGCATGCCCCACCCCCACTCCCACCCCCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGTGCCTGAGAAGGCATGCCCCACCCCCACTCCCACCCCCTAGG  700

seq1  AAAATGAAACGCCTGGAATTGGCCTAGGTATGAAGCCCACCTAGCTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAACGCCTGGAATTGGCCTAGGTATGAAGCCCACCTAGCTGGGC  750

seq1  TAGCCTCATCTCTTCTTAGAACGGCGGTTCTCAACCTTTCTT-AATGCTG  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGCCTCATCTCTTCTTAGAACGGCGGTTCTCAACCTTTCTTAAATGCTG  800

seq1  TGACCCTTAAATACAATTCCTCATGTTA-TTTCATTGCTCCTTCATAGCT  848
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGACCCTTAAATACAATTCCTCATGTTATTTTCATTGCTCCTTCATAGCT  850

seq1  GTAATTTTGCTACTGAAATGCATGGTAGGTAATGTAAATATCTGATCTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGCTACTGAAATGCATGGTAGGTAATGTAAATATCTGATCTGC  900

seq1  AGGATATCTGATATGCACCCCTGTTGAGGCGGAGACTCACAGGCTGAGAA  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGATATCTGATATGCACCCCTGTTGAGGCGGAGACT-ACAGGCTGAGAA  949

seq1  CTGCCATCTTAGAGGGAAAGCTATGTCTTGGACTCCGAGAGGCTGTGTCA  998
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  CTGCCATCTTAAAGGGAAAGCTATGTCTTGGACT-CGAGAGGCTGTGTCA  998

seq1  GTAGCCTTCATGACCT-GAAATTTTGTTTTGTTTTTGCTTTGTTGTTGTT  1047
      |||||||||||||||| |||||||||||| |  ||||||| ||||||| |
seq2  GTAGCCTTCATGACCTGGAAATTTTGTTTGG--TTTGCTTGGTTGTTG-T  1045

seq1  GTTTTTCGAGACAGGGTTTTTCTG-TATAGCCCTGGCTG  1085
      |||||||  |||||| |||||||| ||||| ||||||||
seq2  GTTTTTCAGGACAGGTTTTTTCTGATATAG-CCTGGCTG  1083

seq1: chr17_31629883_31630660
seq2: B6Ng01-116H15.g_67_849 (reverse)

seq1  CAAACACCATGA-CCAAGAAGCAAGTTGGGGAGG-AAATGGTTTATTCGG  48
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  CAAACACCATGACCCAAGAAGCAAGTTGGGGAGGAAAATGGTTTATTCGG  50

seq1  CTTACACTCCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGG-AAC  97
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTACACTCCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAAAC  100

seq1  TCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTT  150

seq1  C-TTTACTGGTTTGCTTCCCCTGGCTTGCTCTTATAGAACCAAGACAACC  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTGGTTTGCTTCCCCTGGCTTGCTCTTATAGAACCAAGACAACC  200

seq1  AGCTCAGAGATGGTTCCACCCAC-AAGGGGCCTCTCCCCCTTGAACACTA  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTCAGAGATGGTTCCACCCACAAAGGGGCCTCTCCCCCTTGAACACTA  250

seq1  ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTG  300

seq1  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACT  350

seq1  AGCCAGTACACGAACAGAAGCAATTAAATGGGCTGTCAAGACAGGAGCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTACACGAACAGAAGCAATTAAATGGGCTGTCAAGACAGGAGCTC  400

seq1  AGAGCTACACATCTGATCAGAGTAGACTGTGAACTTAAAACTGGAATAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACACATCTGATCAGAGTAGACTGTGAACTTAAAACTGGAATAAA  450

seq1  AGCCAGGTGTGGTGATGCAGATGGTTTTAATTCTAGCCTTGGGAGGCAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTGTGGTGATGCAGATGGTTTTAATTCTAGCCTTGGGAGGCAGA  500

seq1  TCTTTGGGGGTTTGAGGCTAGCCTGGTTTGTTATACAGAGAAATCCTGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGGGTTTGAGGCTAGCCTGGTTTGTTATACAGAGAAATCCTGTC  550

seq1  TTGAAAAACAAACAAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACAAACAAGAGGCAGGCAGATTTCTAAGTTCGAGGCCAGCCTG  600

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGT  650

seq1  CTCGGGGGGGGGGGGGGGGGGAGAAAGAAAGAAAGAAAAAAAGGAAAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGGGGGGGGGGGGGGGAGAAAGAAAGAAAGAAAAAAAGGAAAAAC  700

seq1  AAACAAAAAAGGTGAAACAAAACCAGGAGCGTTTTGGAAAATTTTGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGGTGAAACAAAACCAGGAGCGTTTTGGAAAATTTTGAGAA  750

seq1  AATCTTCAAGATCTAGGATTGGAGGGAGAATTC  778
      |||||||||||||||||||||||||||||||||
seq2  AATCTTCAAGATCTAGGATTGGAGGGAGAATTC  783