BAC Information

Click to search

BAC

Clone NameB6Ng01-116O05
Chromosome17 (Build37)
Map Location 64,896,962 - 65,039,366
singlet/doubletdoublet
Overlap geneMan2a1
Upstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582
Downstream gene4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116O05.bB6Ng01-116O05.g
ACCDH921772DH921773
length1,2261,068
definitionDH921772|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O05, 5' end.DH921773|Mus musculus domesticus DNA, BAC clone: B6Ng01-116O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,038,129 - 65,039,366)(64,896,962 - 64,898,029)
sequence
gaattccattggtcacatttcatatcatggtcccataatacttgctccag
tcccccactccccccaaatgaagctcttgccagcaaccaaactgcgtgct
cacctggctcttttaaaaatggcatctctgctattcccaatgagtgccaa
ggagagggttttcttagcatcttctccatctgccacatgctacttttcac
gcctttctccagcccactctctttctccccctctttaaaatgtctccttc
ttatagccaactggattttccatctctattatgttgtagctttaatcact
ggccagctcttgggaggggagagctctctaaactacaccactccctcgct
aatggactctggattttttctctgttcttctttgtaaagttttctgtttt
gctttgctagaaaaccagaaaagagtttctttttggggtttcatctcacc
tctctgagaactgtctagcttccaagagctgtccatcagtctcctatctg
tgttcactacctgttgttgtgtcctttttcccaataggagatcaggactt
tggcttggaatcctgccctccatgcctaccctcttcctgctctgtgcatc
tctcgatggtctttcatgtcacttgcagtttagaatccctactgaacatc
cagtcactatccccctaacagttttcactttatcactccccctttttgat
actgcctagccatttagattttttttttaggtttttcttgttgcctctat
tttaattttctagctctaatttctttcttttgttaattctgtgtagtatt
tgagactaagcccaggacttaaacatactacacaaatcactctgctactg
agctacatctccaatcaaccttttcctttttagctttgtatttcagtatg
cacatctttgaggtcaatgctcaggtttcacgacgtctaggtagctactt
cctctctttaatgttctcaaaataaatcttttagaggtaatttgtttcat
gttttcttgtttctacttccagtcatgcataatctacttctggagttttc
acaggttttttctctcactattctcaagggcagtaggactccacccaccc
agaaatctgtatctgcttaggcttccttcggcttttctgctttattaagt
gaggtcctttgagaggactaatctggacaaggatatttgaaaactcaatg
gtcacactctgccagggaatttactg
gaattccatgcctcagcacagatggcattcctaccacactgtttcctgtg
tccacaggaatcacaacatgtctatacccggccttccataatgaccgtat
tgcacaatctcaggccctgttcacatatattctgccgttcactcagccat
ctcagcagggagctgggcactgaatgattgtcacttcagtccatactgtc
tggtcacaggtcggtgctcggggtacaaaaccgaacagcaatcaagtcag
cttaatttcagaggaaacaggatgtctgagctactggaggtagtcatttt
catcttaaaagtagttgcttaatatctccagctgtacttactgaagaaga
aagcgggcacagctgacgctgaaatttagtagacagacatggaattcaat
cactgaactcactctcacctccgcttgggccagccaatgtttactgttga
ggtcaacaatagccctgggaaaagctgtcttgaatggcagtcaccatctt
caatgaacttcggaaactcatccggtcttgaagcaaggacatgggtttct
aaggatgtctttgcttgagttggtctcagttcaagtctgtctttcaagct
gctgtcaagcaaatctgggcaagtgacacatttcgctgaacttaaaacat
gtacctctatgtaatagcagctatacaacatgggtattagaggggaaact
ccaataattattataaagagcggtaccgggtcagtcggggctccttagaa
ggcaagtctaaatctagtttctcaggccaaggactgggctgaaatattca
tgtgcctaccgattcatttgcctctccctcctttctggccatgaaagagc
attcatccattagtgaaacccttgagaggaaaacagacccaatgcgtttc
tgttctgcagtctacgggcgctctctctgtttggcacgttcacactgcca
cagtcatgaaacttctatatgtttcactcaacttctgcctcttggcagcc
atggccaaaaccaccctgcagctgtcattcgcaagagggatccttcgcca
ttcacctgaagagccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65038129_65039366
seq2: B6Ng01-116O05.b_49_1274 (reverse)

seq1  CAGTAAATTCCCTGGCAGATGCCTGACACATTGTAGGTTATTCAAAAATA  50
      ||||||||||||||||||| |  |||| ||||| ||  | |||||| || 
seq2  CAGTAAATTCCCTGGCAGA-GTGTGAC-CATTG-AG--TTTTCAAATATC  45

seq1  CTTGT-CAGATTAACTCCATCTAGAAGGACTTCAACTAATATTAAGACAG  99
      ||||| |||||| | ||| |||  |||||| |||  |||||  ||| |||
seq2  CTTGTCCAGATT-AGTCC-TCTCAAAGGACCTCACTTAATA--AAG-CAG  90

seq1  AAAAGACGAAGGGAGCCTAAGCAGATACAGA-TTCTGGGTGGGTGGAGGT  148
      ||||| |||||| |||||||||||||||||| ||||||||||||||||  
seq2  AAAAGCCGAAGGAAGCCTAAGCAGATACAGATTTCTGGGTGGGTGGAGTC  140

seq1  CTACTG-CCTTGAGAATAAGTGAAGAGAAAAAAACTGTGGAAAACT-CAG  196
      |||||| |||||||||| |||| |||||||||| |||| ||||||| |||
seq2  CTACTGCCCTTGAGAAT-AGTG-AGAGAAAAAACCTGT-GAAAACTCCAG  187

seq1  AAGTAGATTATGCAATGACTGGAAGTAGGAAACAAGAAAACATGAAACAA  246
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  AAGTAGATTATGC-ATGACTGGAAGTA-GAAACAAGAAAACATGAAACAA  235

seq1  ATTACCTCTTAAAAGATTTATTTTGAGAACATTAAAGAGAGGAAGTAGCT  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTC-TAAAAGATTTATTTTGAGAACATTAAAGAGAGGAAGTAGCT  284

seq1  ACCTAGACGTCGTGAAACCTGAGCATTGACCTCAAAGATGTGCATACTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGACGTCGTGAAACCTGAGCATTGACCTCAAAGATGTGCATACTGA  334

seq1  AATACAAAGCTAAAAAGGAAAAGGTTGATTGGAGATGTAGCTCAGTAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGCTAAAAAGGAAAAGGTTGATTGGAGATGTAGCTCAGTAGCA  384

seq1  GAGTGATTTGTGTAGTATGTTTAAGTCCTGGGCTTAGTCTCAAATACTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTTGTGTAGTATGTTTAAGTCCTGGGCTTAGTCTCAAATACTAC  434

seq1  ACAGAATTAACAAAAGAAAGAAATTAGAGCTAGAAAATTAAAATAGAGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTAACAAAAGAAAGAAATTAGAGCTAGAAAATTAAAATAGAGGC  484

seq1  AACAAGAAAAACCTAAAAAAAAAATCTAAATGGCTAGGCAGTATCAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAAACCTAAAAAAAAAATCTAAATGGCTAGGCAGTATCAAAAA  534

seq1  GGGGGAGTGATAAAGTGAAAACTGTTAGGGGGATAGTGACTGGATGTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTGATAAAGTGAAAACTGTTAGGGGGATAGTGACTGGATGTTCA  584

seq1  GTAGGGATTCTAAACTGCAAGTGACATGAAAGACCATCGAGAGATGCACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGATTCTAAACTGCAAGTGACATGAAAGACCATCGAGAGATGCACA  634

seq1  GAGCAGGAAGAGGGTAGGCATGGAGGGCAGGATTCCAAGCCAAAGTCCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAAGAGGGTAGGCATGGAGGGCAGGATTCCAAGCCAAAGTCCTG  684

seq1  ATCTCCTATTGGGAAAAAGGACACAACAACAGGTAGTGAACACAGATAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTATTGGGAAAAAGGACACAACAACAGGTAGTGAACACAGATAGG  734

seq1  AGACTGATGGACAGCTCTTGGAAGCTAGACAGTTCTCAGAGAGGTGAGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATGGACAGCTCTTGGAAGCTAGACAGTTCTCAGAGAGGTGAGAT  784

seq1  GAAACCCCAAAAAGAAACTCTTTTCTGGTTTTCTAGCAAAGCAAAACAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCAAAAAGAAACTCTTTTCTGGTTTTCTAGCAAAGCAAAACAGA  834

seq1  AAACTTTACAAAGAAGAACAGAGAAAAAATCCAGAGTCCATTAGCGAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTACAAAGAAGAACAGAGAAAAAATCCAGAGTCCATTAGCGAGGG  884

seq1  AGTGGTGTAGTTTAGAGAGCTCTCCCCTCCCAAGAGCTGGCCAGTGATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTAGTTTAGAGAGCTCTCCCCTCCCAAGAGCTGGCCAGTGATTA  934

seq1  AAGCTACAACATAATAGAGATGGAAAATCCAGTTGGCTATAAGAAGGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAACATAATAGAGATGGAAAATCCAGTTGGCTATAAGAAGGAGA  984

seq1  CATTTTAAAGAGGGGGAGAAAGAGAGTGGGCTGGAGAAAGGCGTGAAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAGAGGGGGAGAAAGAGAGTGGGCTGGAGAAAGGCGTGAAAAG  1034

seq1  TAGCATGTGGCAGATGGAGAAGATGCTAAGAAAACCCTCTCCTTGGCACT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTGGCAGATGGAGAAGATGCTAAGAAAACCCTCTCCTTGGCACT  1084

seq1  CATTGGGAATAGCAGAGATGCCATTTTTAAAAGAGCCAGGTGAGCACGCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGAATAGCAGAGATGCCATTTTTAAAAGAGCCAGGTGAGCACGCA  1134

seq1  GTTTGGTTGCTGGCAAGAGCTTCATTTGGGGGGAGTGGGGGACTGGAGCA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTGCTGGCAAGAGCTTCATTTGGGGGGAGTGGGGGACTGGAGCA  1184

seq1  AGTATTATGGGACCATGATATGAAATGTGACCAATGGAATTC  1238
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATGGGACCATGATATGAAATGTGACCAATGGAATTC  1226

seq1: chr17_64896962_64898029
seq2: B6Ng01-116O05.g_72_1139

seq1  GAATTCCATGCCTCAGCACAGATGGCATTCCTACCACACTGTTTCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCTCAGCACAGATGGCATTCCTACCACACTGTTTCCTGTG  50

seq1  TCCACAGGAATCACAACATGTCTATACCCGGCCTTCCATAATGACCGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAATCACAACATGTCTATACCCGGCCTTCCATAATGACCGTAT  100

seq1  TGCACAATCTCAGGCCCTGTTCACATATATTCTGCCGTTCACTCAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATCTCAGGCCCTGTTCACATATATTCTGCCGTTCACTCAGCCAT  150

seq1  CTCAGCAGGGAGCTGGGCACTGAATGATTGTCACTTCAGTCCATACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGGAGCTGGGCACTGAATGATTGTCACTTCAGTCCATACTGTC  200

seq1  TGGTCACAGGTCGGTGCTCGGGGTACAAAACCGAACAGCAATCAAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAGGTCGGTGCTCGGGGTACAAAACCGAACAGCAATCAAGTCAG  250

seq1  CTTAATTTCAGAGGAAACAGGATGTCTGAGCTACTGGAGGTAGTCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTCAGAGGAAACAGGATGTCTGAGCTACTGGAGGTAGTCATTTT  300

seq1  CATCTTAAAAGTAGTTGCTTAATATCTCCAGCTGTACTTACTGAAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAAAAGTAGTTGCTTAATATCTCCAGCTGTACTTACTGAAGAAGA  350

seq1  AAGCGGGCACAGCTGACGCTGAAATTTAGTAGACAGACATGGAATTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGCACAGCTGACGCTGAAATTTAGTAGACAGACATGGAATTCAAT  400

seq1  CACTGAACTCACTCTCACCTCCGCTTGGGCCAGCCAATGTTTACTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACTCACTCTCACCTCCGCTTGGGCCAGCCAATGTTTACTGTTGA  450

seq1  GGTCAACAATAGCCCTGGGAAAAGCTGTCTTGAATGGCAGTCACCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACAATAGCCCTGGGAAAAGCTGTCTTGAATGGCAGTCACCATCTT  500

seq1  CAATGAACTTCGGAAACTCATCCGGTCTTGAAGCAAGGACATGGGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTTCGGAAACTCATCCGGTCTTGAAGCAAGGACATGGGTTTCT  550

seq1  AAGGATGTCTTTGCTTGAGTTGGTCTCAGTTCAAGTCTGTCTTTCAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTCTTTGCTTGAGTTGGTCTCAGTTCAAGTCTGTCTTTCAAGCT  600

seq1  GCTGTCAAGCAAATCTGGGCAAGTGACACATTTCGCTGAACTTAAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAAGCAAATCTGGGCAAGTGACACATTTCGCTGAACTTAAAACAT  650

seq1  GTACCTCTATGTAATAGCAGCTATACAACATGGGTATTAGAGGGGAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTATGTAATAGCAGCTATACAACATGGGTATTAGAGGGGAAACT  700

seq1  CCAATAATTATTATAAAGAGCGGTACCGGGTCAGTCGGGGCTCCTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTATTATAAAGAGCGGTACCGGGTCAGTCGGGGCTCCTTAGAA  750

seq1  GGCAAGTCTAAATCTAGTTTCTCAGGCCAAGGACTGGGCTGAAATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCTAAATCTAGTTTCTCAGGCCAAGGACTGGGCTGAAATATTCA  800

seq1  TGTGCCTACCGATTCATTTGCCTCTCCCTCC-TTCTGGCCATGAAAGAGC  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTGCCTACCGATTCATTTGCCTCTCCCTCCTTTCTGGCCATGAAAGAGC  850

seq1  ATTCATCCATTAGTGAAACCCTTGAGAAGAAAACAGACCCAATGCGTTTC  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTCATCCATTAGTGAAACCCTTGAGAGGAAAACAGACCCAATGCGTTTC  900

seq1  TGTTCTGCAGTCTACGGGCGCTCTCTCTGTTTGGCCACGTTCACACTGCC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTTCTGCAGTCTACGGGCGCTCTCTCTGTTTGG-CACGTTCACACTGCC  949

seq1  ACAGTCATGAAACTTCTATAATGTTTTCACTCAACTTCTGCCTCTTGGCA  999
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  ACAGTCATGAAACTTCTAT-ATG-TTTCACTCAACTTCTGCCTCTTGGCA  997

seq1  GCCATGGCCAAAACCACCCTGCAGCTGTCATTCGCAAGAGGGATCCCTCG  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCATGGCCAAAACCACCCTGCAGCTGTCATTCGCAAGAGGGATCCTTCG  1047

seq1  CCAATCA-CTG-AGAGCCACC  1068
      ||| ||| ||| |||||||||
seq2  CCATTCACCTGAAGAGCCACC  1068