BAC Information

Click to search

BAC

Clone NameB6Ng01-117K03
Chromosome17 (Build37)
Map Location 78,522,218 - 78,523,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545234, LOC100043887, LOC668795
Downstream geneLOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K03.g
ACCDH922324
length1,135
definitionDH922324|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaaagctgacccaaagtcaagtcattcagtttccaaggaaat
acagtttccttttttctccccttgccttccagcctcaggttcaaaagtct
atttcctaacctcacagagctccatcatatctacttaaggatgatgtgga
gtgggatacatttattttcttcagaggcatttaaaaaaatattctacaat
cataagctgtcaacataagcaaagtatgtgttttgaaaaaatgtgtgggt
aaaatttgtgcatatctccaaatacaatgtatagaatgtgcaccatagta
aaaatggaaagtacacccttggtttgaaattctaattttcttgatgaagc
caaagcctatataaagctatagtcaatgcttttttgcaaagagtaaactt
tgggaaaaaatgaacctgaaagcttatgaagccagagtaatggaaacaga
gtgtggtgcatcatgaatcaatatcaggtttttttgaggaaggcagaatg
accagcccagacaataacgtgtcaagaactataaaatgtatcaagttcca
gaaaccagacaatattgggtaaaatgcccttcagattcatttctcccatg
ataatcaacagtgggaaaatgcactaaaatgtaggaaaatcatattctgg
aaagcgtattaaatcagagacatgagagcatcataattgatttcataaaa
acactccgaggaaaacaaactcgatacaacttgcgagatgcttcaagagg
ggtgtccagctgtcagtgatcaaggaaaaaaaaaccaactgagaaactgc
atcaaacatttgggaaaattctccagatgaagctctgagaagcgaagcct
aaactcactcagcatttgttaaaatgaggtttcatactacgggcctttgt
ttattccatgaatatgcatgtgagggtccgtcatggctttactttagata
cacttcactagcctggatctactactctaattagaatatgttggcctgtt
atatttattgatgtattattttctttgctgagactgtcctagtctttatc
aacaagacaagtatgactaatgtaaactggatgtccaactggtggtgatg
gatgcgatccaccttaatttagtggtcagaggtgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78522218_78523373
seq2: B6Ng01-117K03.g_67_1201 (reverse)

seq1  ACACTCTCTGACCACTTAGATTATAGTTGTGAATCGCATCCCATCACCAC  50
      |||| |||||||||| || |||| ||  ||| ||||||| ||||||||||
seq2  ACAC-CTCTGACCAC-TAAATTA-AG--GTGGATCGCAT-CCATCACCAC  44

seq1  CAGTTTGGACAATACGCAGTTTACATTTAGTCATACTTGTCTTGTTTGAT  100
      ||| ||||||   |  ||||||||| |||||||||||||||||| |||||
seq2  CAG-TTGGAC---ATCCAGTTTACA-TTAGTCATACTTGTCTTG-TTGAT  88

seq1  AAAGACTTAGGACAGTCTCCAGCAAAGAAAATTAAATACATCCAATAAAT  150
      |||||| ||||||||||| |||||||||||||  ||||||| ||||||||
seq2  AAAGAC-TAGGACAGTCT-CAGCAAAGAAAAT--AATACAT-CAATAAAT  133

seq1  ATAACAAGGCCAACATATTCTAATTAGAGTAGTAGATCCCAGGCTAGTTG  200
      ||||| ||||||||||||||||||||||||||||||| ||||||||| ||
seq2  ATAAC-AGGCCAACATATTCTAATTAGAGTAGTAGAT-CCAGGCTAG-TG  180

seq1  AAGTGTTATCTAAAGTAAAGCCATGACGGACCCTCACATGCATATTCATG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTG-TATCTAAAGTAAAGCCATGACGGACCCTCACATGCATATTCATG  229

seq1  GAATAAACAAAGGCCCGTAGTATGAAACCTCATTTTAACAAATGCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACAAAGGCCCGTAGTATGAAACCTCATTTTAACAAATGCTGAGT  279

seq1  GAGTTTAGGCTTCGCTTCTCAGAGCTTCATCTGGAGAATTTTCCCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGGCTTCGCTTCTCAGAGCTTCATCTGGAGAATTTTCCCAAATG  329

seq1  TTTGATGCAGTTTCTCAGTTGGTTTTTTTTTCCTTGATCACTGACAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCAGTTTCTCAGTTGGTTTTTTTTTCCTTGATCACTGACAGCTG  379

seq1  GACACCCCTCTTGAAGCATCTCGCAAGTTGTATCGAGTTTGTTTTCCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCCTCTTGAAGCATCTCGCAAGTTGTATCGAGTTTGTTTTCCTCG  429

seq1  GAGTGTTTTTATGAAATCAATTATGATGCTCTCATGTCTCTGATTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTTATGAAATCAATTATGATGCTCTCATGTCTCTGATTTAATA  479

seq1  CGCTTTCCAGAATATGATTTTCCTACATTTTAGTGCATTTTCCCACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTCCAGAATATGATTTTCCTACATTTTAGTGCATTTTCCCACTGTT  529

seq1  GATTATCATGGGAGAAATGAATCTGAAGGGCATTTTACCCAATATTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCATGGGAGAAATGAATCTGAAGGGCATTTTACCCAATATTGTCT  579

seq1  GGTTTCTGGAACTTGATACATTTTATAGTTCTTGACACGTTATTGTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGGAACTTGATACATTTTATAGTTCTTGACACGTTATTGTCTGG  629

seq1  GCTGGTCATTCTGCCTTCCTCAAAAAAACCTGATATTGATTCATGATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCATTCTGCCTTCCTCAAAAAAACCTGATATTGATTCATGATGCA  679

seq1  CCACACTCTGTTTCCATTACTCTGGCTTCATAAGCTTTCAGGTTCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCTGTTTCCATTACTCTGGCTTCATAAGCTTTCAGGTTCATTTT  729

seq1  TTCCCAAAGTTTACTCTTTGCAAAAAAGCATTGACTATAGCTTTATATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAGTTTACTCTTTGCAAAAAAGCATTGACTATAGCTTTATATAG  779

seq1  GCTTTGGCTTCATCAAGAAAATTAGAATTTCAAACCAAGGGTGTACTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCTTCATCAAGAAAATTAGAATTTCAAACCAAGGGTGTACTTTC  829

seq1  CATTTTTACTATGGTGCACATTCTATACATTGTATTTGGAGATATGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTACTATGGTGCACATTCTATACATTGTATTTGGAGATATGCACA  879

seq1  AATTTTACCCACACATTTTTTCAAAACACATACTTTGCTTATGTTGACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACCCACACATTTTTTCAAAACACATACTTTGCTTATGTTGACAG  929

seq1  CTTATGATTGTAGAATATTTTTTTAAATGCCTCTGAAGAAAATAAATGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATTGTAGAATATTTTTTTAAATGCCTCTGAAGAAAATAAATGTA  979

seq1  TCCCACTCCACATCATCCTTAAGTAGATATGATGGAGCTCTGTGAGGTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCCACATCATCCTTAAGTAGATATGATGGAGCTCTGTGAGGTTA  1029

seq1  GGAAATAGACTTTTGAACCTGAGGCTGGAAGGCAAGGGGAGAAAAAAGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGACTTTTGAACCTGAGGCTGGAAGGCAAGGGGAGAAAAAAGGA  1079

seq1  AACTGTATTTCCTTGGAAACTGAATGACTTGACTTTGGGTCAGCTTTTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTTCCTTGGAAACTGAATGACTTGACTTTGGGTCAGCTTTTTG  1129

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1135