BAC Information

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BAC

Clone NameB6Ng01-118I05
Chromosome17 (Build37)
Map Location 27,479,708 - 27,710,782
singlet/doubletdoublet
Overlap geneENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582
Upstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713
Downstream geneNudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118I05.bB6Ng01-118I05.g
ACCDH922972DH922973
length631422
definitionDH922972|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I05, 5' end.DH922973|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,710,151 - 27,710,782)(27,479,708 - 27,480,135)
sequence
gaattctccagcatgggtttgttttttttggtgagtgtgtctataaacag
acctcattatactgtttttctttttctttttttaaagattcattatttat
tatatgtaagtacactgtagctgtcttcagacaatccacaagagggagtc
agatcttgttacagatggttgtgagccaccatgtggttgctgggatttga
actccaaaccttcggaagagcagtctggtgctcttacccactgagccatc
tcaccagcccaaaagtttttttttttttagatgtttatttattattatac
ataagcacactgtatctgtcttcagacaccagaagagggcgtcagatctc
attacaggtggttgtgagccaccatgtggttgctgagatttgaactcagg
acctttggaagagcagtcagtgttcttagccactgagccatctcgacagc
ccccgtttttcattaaactaaaactgttcttcaagctcggtatggtggtc
tgtcctatgaacctgaagtcagaatggcctacagagtgaagcccacatct
caatggcaaacagggaagccacctttttccatattggggccagggggcca
gagcttactgaatgctgccccaccccaatac
atgcagcttgcccagtggctccagaggccaagtctctctcatgtctttgg
tgggtgctggggattgggatgcacaggacagtgtaagagtagaaatgcct
gtgctgagaaaggcgtttgctggcatcaaggggagggggaaactgaaagc
aaccagggaggaggaggggagaaggggggtgcaggctgtgagaagatggt
caatgcccgccggcagggctttgccatgtgtgaatggatctggaggttgg
aacagctagaatggagctgagagctgaagagaatgtacagagtgaagcat
ccgagcatctctgaagggagagggaggcatgatggggctgtgcaactcca
cagggtgccacggaggagaaagaggaagaggaggaggaagagcaggagga
ggaggaatgtattgggtcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27710151_27710782
seq2: B6Ng01-118I05.b_47_677 (reverse)

seq1  GTATTGGGGGTGGGGCAGCATTCAGTAAGCTCTGGCCCCCTGGCCCCAAT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATT-GGGGTGGGGCAGCATTCAGTAAGCTCTGGCCCCCTGGCCCCAAT  49

seq1  ATGGAAAAAGGTGGCTTCCCTGTTTGCCATTGAGATGTGGGCTTCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAGGTGGCTTCCCTGTTTGCCATTGAGATGTGGGCTTCACTCT  99

seq1  GTAGGCCATTCTGACTTCAGGTTCATAGGACAGACCACCATACCGAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCATTCTGACTTCAGGTTCATAGGACAGACCACCATACCGAGCTT  149

seq1  GAAGAACAGTTTTAGTTTAATGAAAAACGGGGGCTGTCGAGATGGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAGTTTTAGTTTAATGAAAAACGGGGGCTGTCGAGATGGCTCAG  199

seq1  TGGCTAAGAACACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAGAACACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCTCAG  249

seq1  CAACCACATGGTGGCTCACAACCACCTGTAATGAGATCTGACGCCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGGCTCACAACCACCTGTAATGAGATCTGACGCCCTCTT  299

seq1  CTGGTGTCTGAAGACAGATACAGTGTGCTTATGTATAATAATAAATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCTGAAGACAGATACAGTGTGCTTATGTATAATAATAAATAAAC  349

seq1  ATCTAAAAAAAAAAAAACTTTTGGGCTGGTGAGATGGCTCAGTGGGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAAAAAAAAAACTTTTGGGCTGGTGAGATGGCTCAGTGGGTAAG  399

seq1  AGCACCAGACTGCTCTTCCGAAGGTTTGGAGTTCAAATCCCAGCAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGACTGCTCTTCCGAAGGTTTGGAGTTCAAATCCCAGCAACCAC  449

seq1  ATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTGTGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTGTGGATT  499

seq1  GTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAATGAATCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAATGAATCTTTA  549

seq1  AAAAAAGAAAAAGAAAAACAGTATAATGAGGTCTGTTTATAGACACACAC  600
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAAAGAAAAAGAAAAACAGTATAATGAGGTCTGTTTATAGACACACTC  599

seq1  ACCAAAAAAAACAAACCCATGCTGGAGAATTC  632
      ||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAACAAACCCATGCTGGAGAATTC  631

seq1: chr17_27479708_27480135
seq2: B6Ng01-118I05.g_71_498

seq1  GAATTCATGCAGCTTGCCCAGTGGCTCCAGAGGCCAAGTCTCTCTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGCTTGCCCAGTGGCTCCAGAGGCCAAGTCTCTCTCATGT  50

seq1  CTTTGGTGGGTGCTGGGGATTGGGATGCACAGGACAGTGTAAGAGTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGGGTGCTGGGGATTGGGATGCACAGGACAGTGTAAGAGTAGAA  100

seq1  ATGCCTGTGCTGAGAAAGGCGTTTGCTGGCATCAAGGGGAGGGGGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGCTGAGAAAGGCGTTTGCTGGCATCAAGGGGAGGGGGAAACT  150

seq1  GAAAGCAACCAGGGAGGAGGAGGGGAGAAGGGGGGTGCAGGCTGTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAACCAGGGAGGAGGAGGGGAGAAGGGGGGTGCAGGCTGTGAGAA  200

seq1  GATGGTCAATGCCCGCCGGCAGGGCTTTGCCATGTGTGAATGGATCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCAATGCCCGCCGGCAGGGCTTTGCCATGTGTGAATGGATCTGGA  250

seq1  GGTTGGAACAGCTAGAATGGAGCTGAGAGCTGAAGAGAATGTACAGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAACAGCTAGAATGGAGCTGAGAGCTGAAGAGAATGTACAGAGTG  300

seq1  AAGCATCCGAGCATCTCTGAAGGGAGAGGGAGGCATGATGGGGCTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCGAGCATCTCTGAAGGGAGAGGGAGGCATGATGGGGCTGTGCA  350

seq1  ACTCCACAGGGTGCCACGGAGGAGAAAGAGGAAGAGGAGGAGGAAGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGGGTGCCACGGAGGAGAAAGAGGAAGAGGAGGAGGAAGAGCA  400

seq1  GGAGGAGGAGGAATGTATTGGGTCTTGG  428
      ||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAATGTATTGGGTCTTGG  428