BAC Information

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BAC

Clone NameB6Ng01-120G09
Chromosome17 (Build37)
Map Location 33,114,996 - 33,116,036
singlet/doubletsinglet
Overlap geneZfp472
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik
Downstream geneC920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120G09.bB6Ng01-120G09.g
ACCDH924353DH924354
length1,1461,153
definitionDH924353|Mus musculus domesticus DNA, BAC clone: B6Ng01-120G09, 5' end.DH924354|Mus musculus domesticus DNA, BAC clone: B6Ng01-120G09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacactggagagaagccctgtgtctgcaagcagtgtgggaaagca
ttcaaatgttctgcgtaccttcacatacatgaacgatctcacagtggaga
aaaaccctatgtgtgtaagcattgtggcaaagcctttgcctatgccaccg
ggtgtcacaaacatgagaggattcacacaggagagaaaccgtatatgtgt
gtgcagtgtgggaaactattcactttccccagatcccttcacatacacga
gcgatctcatagtggagaaaaaccttatgtatgtaagcagtgtgggaaat
ccttcactcagggaacttctttgcgaagacatgaacgaattcacactgga
gaaaaaccttatgtatgtaagcagtgtgggaaagccttcatccaacgtga
tgattgctacagtcatgaacgaactcacacaggagagaaaccattcatgt
gtgttcaatgtgggaaaacattcaccttttccaaatctcttcagatacat
gaaaaaaatcacactggagagaaaccctatatatgtaagcagtgtgggaa
agcgttcacctgttccacataccttctcagacatgaacgaactcacagtg
agaagaagctcagtggctaatatttctcgcactctaaatcatgggaatgt
ctgatgtcaacttttattttgaggtatgaaggaaaatggagagccactgt
aagattatgagaagtgcaggaggataatttgggtctccatgctttctgta
agatggcaacctgtacaacaggttttgctgctgtgtgtcttttgttccag
taatgaaaaagtaaaagttatgcaattacaatattcaacgaagcctgtgc
tgtttactgggtttgaacacagcttgggaagtttatctaccaatttcaac
taaatgaaattgtctgtaatataaaaaagttgcatttttttaccataaga
taaaatttatgacagtatctcatgtggttgggtcctatgaaagagatatg
aagatactgaagttaatttgtgttaatatttctgaaaataaacttgttga
agtgataccgtaggttctgagtaattttaaaacccttgattattaataag
tgtgttttatttgctctgagttttaagtcaggctctcacaacgaac
gaattctctctagcatgggtcttttcatgtattctaagggaaccacaacg
agtgaaggctttcccacactgcttacatatgtagggcttctcaccggtgt
gaatttgctcatgtctctgacagtcacccaaagcaggaaaggctttccca
cactgcttgcatgcatagggcctttctccactgtgaatcctttcatggcg
ccgaagggaactgtacccactgaaagctttcccacactccttacagtcat
agggtttttccctagtatgaatcctttcatggcgctgaagagaactctgt
atagtgaaggctttaccacattccttacatctatagggcttctctccggt
gtgaattcgttcatggatccgaaaggtaccagaagagatgaaacctttcc
cacactgttcacagacatagggtttctcaccgctgtgaattctttcatga
tttcgaagggaagtacgagtagtgacagctttattacacaggttacaaac
atagagtttctctccagtgtgagtccgttcgtgtactcgacaggtacttg
aagaaatgaaacatttgccacagtatttgcatacatagggtttctctcca
ctgtgaattctttcatggcgtggaagtgaactttgaccagtgaaagcttt
cccacaatacttacatacaaagggtttctctccgctgtgaatcctgtcat
gacgtcgaagggaaccacgactagggaggctttcccacagtggttacata
tgtagggtttctcaccggtatgagttctttcatgtcttcgaaccttactt
gaagaagaaaaggctttcccacattgatgacatttatacgtttctcaatg
gtgtgggtatttccatgtttcagatagcactcagatacatgaaggtttcc
acactcctaaatttatagagactgtcttcatatacctcatattcaatacg
tttatgtcctggttgagaggataatgcaaatttttgggtggaagacaata
gtatgtctctccataaataactttcacaccgttactcccttagaagtttc
ttgtctaacgattcgggaactcactggaagttcgctcatgttgccttcct
ggttaacaataattcccagtccctctgtaaaagaaagagagacctcgaat
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33114996_33116036
seq2: B6Ng01-120G09.b_163_1195

seq1  TGTAAGCATTGTGGCAAAGCCTTTGCCTATGCCACCGGGTGTCACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCATTGTGGCAAAGCCTTTGCCTATGCCACCGGGTGTCACAAACA  50

seq1  TGAGAGGATTCACACAGGAGAGAAACCGTATATGTGTGTGCAGTGTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGATTCACACAGGAGAGAAACCGTATATGTGTGTGCAGTGTGGGA  100

seq1  AACTATTCACTTTCCCCAGATCCCTTCACATACACGAGCGATCTCATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCACTTTCCCCAGATCCCTTCACATACACGAGCGATCTCATAGT  150

seq1  GGAGAAAAACCTTATGTATGTAAGCAGTGTGGGAAATCCTTCACTCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAACCTTATGTATGTAAGCAGTGTGGGAAATCCTTCACTCAGGG  200

seq1  AACTTCTTTGCGAAGACATGAACGAATTCACACTGGAGAAAAACCTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTGCGAAGACATGAACGAATTCACACTGGAGAAAAACCTTATG  250

seq1  TATGTAAGCAGTGTGGGAAAGCCTTCATCCAACGTGATGATTGCTACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGCAGTGTGGGAAAGCCTTCATCCAACGTGATGATTGCTACAGT  300

seq1  CATGAACGAACTCACACAGGAGAGAAACCATTCATGTGTGTTCAATGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACGAACTCACACAGGAGAGAAACCATTCATGTGTGTTCAATGTGG  350

seq1  GAAAACATTCACCTTTTCCAAATCTCTTCAGATACATGAAAAAAATCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTCACCTTTTCCAAATCTCTTCAGATACATGAAAAAAATCACA  400

seq1  CTGGAGAGAAACCCTATATATGTAAGCAGTGTGGGAAAGCGTTCACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGAAACCCTATATATGTAAGCAGTGTGGGAAAGCGTTCACCTGT  450

seq1  TCCACATACCTTCTCAGACATGAACGAACTCACAGTGAGAAGAAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATACCTTCTCAGACATGAACGAACTCACAGTGAGAAGAAGCTCAG  500

seq1  TGGCTAATATTTCTCGCACTCTAAATCATGGGAATGTCTGATGTCAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATATTTCTCGCACTCTAAATCATGGGAATGTCTGATGTCAACTT  550

seq1  TTATTTTGAGGTATGAAGGAAAATGGAGAGCCACTGTAAGATTATGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAGGTATGAAGGAAAATGGAGAGCCACTGTAAGATTATGAGAA  600

seq1  GTGCAGGAGGATAATTTGGGTCTCCATGCTTTCTGTAAGATGGCAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAGGATAATTTGGGTCTCCATGCTTTCTGTAAGATGGCAACCTG  650

seq1  TACAACAGGTTTTGCTGCTGTGTGTCTTTTGTTCCAGTAATGAAAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGGTTTTGCTGCTGTGTGTCTTTTGTTCCAGTAATGAAAAAGTA  700

seq1  AAAGTTATGCAATTACAATATTCAACGAAGCCTGTGCTGTTTACTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGCAATTACAATATTCAACGAAGCCTGTGCTGTTTACTGGGTT  750

seq1  TGAACACAGCTTGGGAAGTTTATCTACCAATTTCAACTAAATGAAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGCTTGGGAAGTTTATCTACCAATTTCAACTAAATGAAATTGT  800

seq1  CTGTAAATATAAAAAAGTTGCATTTTTTTACCAATAAGATAAAATTTATG  850
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGT-AATATAAAAAAGTTGCATTTTTTTACC-ATAAGATAAAATTTATG  848

seq1  ACAGTATCTCATGTGGTTGAGTCCTATGAAAGAGATATGAAGATACTGAA  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGTATCTCATGTGGTTGGGTCCTATGAAAGAGATATGAAGATACTGAA  898

seq1  GGTTAATTTGTGTTAAATATTTCTGAAAATAAAC-TGTGAAAGTGATACG  949
       ||||||||||||| ||||||||||||||||||| |||  ||||||||| 
seq2  -GTTAATTTGTGTT-AATATTTCTGAAAATAAACTTGTTGAAGTGATACC  946

seq1  GTAAGTTCTGAGTATTTTTAAAAACCTTGATTATTTAAATAAAGTGTGTT  999
      ||| |||||||||| |||||||| |||||||||||  ||| |||||||||
seq2  GTAGGTTCTGAGTAATTTTAAAACCCTTGATTATT--AAT-AAGTGTGTT  993

seq1  TTATTT-TGCTGAGTTTATAAGGTCAGTGTCTCACAACAGAAC  1041
      ||||||   |||||||| ||| |||||  ||||||||| ||||
seq2  TTATTTGCTCTGAGTTT-TAA-GTCAGGCTCTCACAAC-GAAC  1033