BAC Information

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BAC

Clone NameB6Ng01-121L18
Chromosome17 (Build37)
Map Location 54,342,733 - 54,501,946
singlet/doubletdoublet
Overlap geneSlc5a7, LOC668529, 1700025K24Rik
Upstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
Downstream geneTrp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121L18.bB6Ng01-121L18.g
ACCDH925344DH925345
length1,050617
definitionDH925344|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L18, 5' end.DH925345|Mus musculus domesticus DNA, BAC clone: B6Ng01-121L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,500,886 - 54,501,946)(54,342,733 - 54,343,349)
sequence
gaattcctaggttgtgaatcacttcatattggagcattgctgagatctac
aggagatactcagccagggcaatctaatgcttttttctgggcattataag
taatattcattttgataataaaattcttagagttaacttggaagctcatg
attttctcactatagagaaaaataaatattggtttacatggtcatatgaa
acacaaatctgaatatctatgtctttgtttctagtaactgttttctcctg
acctggtaagaagttatgtttgaatgcttatccatggacaagaacattta
ttcagatccctgtatttagatgtattggatatagttcattttgagtgctc
agagcacagccttgacacctctagataaatctgatgtaaaaaactcttgt
ctcaagccatagattaaattttgttatcatttttcactgatagacattcc
acacttgtattttggcaattgtagattttcttttcttgcctctaaactca
attcattgtgcatttaattttaattttgttttgtatatacacttttctgt
ctttgtaagttatataccatgtctcttggtgagtttaaaatgaagatgtc
gccaggtatacaggtggacatgtttcttatttgtcatgtcgacttagcag
ctcctgtaatatccttcatcatgtgggatacacaagcaggatgagggcag
agatgaggcacccagatagcagcaagctaatgaaggagaaaggagaacag
atagaacaatgtaagccttgtaacttgtcacagaaacccctttgcacggg
agatgagatgagatgagatgaaatgagctagtttctacatcttgctgttc
aagcatagagcttggatcttcagtgtttgtgtacaagccagatgtgttgc
ccacccagtaaacctaatatgaaggaattgtcagtggagcaggagctgga
tctgtgtaattcactttgtagcaagtaagtcaaattgtgaaacccacatt
tagcagaacccttgtctgaaaaaataaagttggaagagagccatagaata

gaattcaaactgtagaggccatctgatggcttccagaaacacaagactaa
gaacatttgacttcaagtcttggacctacagtttgtgtgctagagtacac
tttaacaattgcatttagacataggctgtgccacttacttgatatgcaaa
tgtgctccttactagatatgaaaatggagttaagttgtatactatgcttc
ttgtgttagacttctatctgcccttgtaggaaaagacctgagacagacag
atcaacttacacaaagacgtttgcctttgattcggtttctgacttgtcag
tccatgttttctagtctcttccctctgggtgagtggtgatgcagatcatc
atgatgggggaagtggtggggaaggaaagctgtccacctcatcatggaaa
ggaaattaaaaggagcaggttggaccccaatatatgcttcaggagcatgg
cctcagtgacctagttttcttcaaggatttcacaaattttctactatctg
taacatcatctggggtctcaagacttcaaactatgcctctcatgggaaat
ttaagaactaacataatactctgatttttttttttaaatcctaagaatgt
caaataaggttgttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54500886_54501946
seq2: B6Ng01-121L18.b_48_1097 (reverse)

seq1  TATTCTATGGCTCTCTTCATACTTTAATTTTTTTTCAGACAGGGTTTCTT  50
      ||||||||||||||||||  ||||||   |||||||||||| || ||| |
seq2  TATTCTATGGCTCTCTTCCAACTTTA---TTTTTTCAGACAAGGGTTC-T  46

seq1  GCTAAATGTGGTTTTCACCATTTTGACTTACCTTGCTACAAAGTGAATTA  100
      ||||||||||| ||||| || ||||||||| |||||||||||||||||||
seq2  GCTAAATGTGGGTTTCA-CAATTTGACTTA-CTTGCTACAAAGTGAATTA  94

seq1  CACAGATCCAGCCTCCTGCCTCCACTGACAATTCCTTCAATATTAGGTTT  150
      ||||||||||| |||||| ||||||||||||||||||| |||||||||||
seq2  CACAGATCCAG-CTCCTG-CTCCACTGACAATTCCTTC-ATATTAGGTTT  141

seq1  ACTGAGTGAGCCACCACATCTGGCTTGTACACAAACACTGAAGATCCAAG  200
      |||| ||| | || ||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTG-GGCAACACATCTGGCTTGTACACAAACACTGAAGATCCAAG  190

seq1  CTCTATGCTTGAACAGCAAGATGTAGAAACTAGCTCATTTCATCTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCTTGAACAGCAAGATGTAGAAACTAGCTCATTTCATCTCATCT  240

seq1  CATCTCATCTCCCCTGCAAAGGGGTTTCTGTGACAAGTTACAAGGCTTAC  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATCTCATCTCCCGTGCAAAGGGGTTTCTGTGACAAGTTACAAGGCTTAC  290

seq1  ATTGTTCTATCTGTTCTCCTTTCTCCTTCATTAGCTTGCCTGCTATCTGG  350
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTGTTCTATCTGTTCTCCTTTCTCCTTCATTAGCTTG-CTGCTATCTGG  339

seq1  GTGCCTCATCTCTGCCCTCATCCTGCTTGTGTATCCCACATGATGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCATCTCTGCCCTCATCCTGCTTGTGTATCCCACATGATGAAGGA  389

seq1  TATTACAGGAGCTGCTAAGTCGACATGACAAATAAGAAACATGTCCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGGAGCTGCTAAGTCGACATGACAAATAAGAAACATGTCCACCT  439

seq1  GTATACCTGGCGACATCTTCATTTTAAACTCACCAAGAGACATGGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCTGGCGACATCTTCATTTTAAACTCACCAAGAGACATGGTATAT  489

seq1  AACTTACAAAGACAGAAAAGTGTATATACAAAACAAAATTAAAATTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAAAGACAGAAAAGTGTATATACAAAACAAAATTAAAATTAAAT  539

seq1  GCACAATGAATTGAGTTTAGAGGCAAGAAAAGAAAATCTACAATTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGAATTGAGTTTAGAGGCAAGAAAAGAAAATCTACAATTGCCAA  589

seq1  AATACAAGTGTGGAATGTCTATCAGTGAAAAATGATAACAAAATTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGTGTGGAATGTCTATCAGTGAAAAATGATAACAAAATTTAATC  639

seq1  TATGGCTTGAGACAAGAGTTTTTTACATCAGATTTATCTAGAGGTGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTGAGACAAGAGTTTTTTACATCAGATTTATCTAGAGGTGTCAA  689

seq1  GGCTGTGCTCTGAGCACTCAAAATGAACTATATCCAATACATCTAAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCTCTGAGCACTCAAAATGAACTATATCCAATACATCTAAATAC  739

seq1  AGGGATCTGAATAAATGTTCTTGTCCATGGATAAGCATTCAAACATAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTGAATAAATGTTCTTGTCCATGGATAAGCATTCAAACATAACT  789

seq1  TCTTACCAGGTCAGGAGAAAACAGTTACTAGAAACAAAGACATAGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAGGTCAGGAGAAAACAGTTACTAGAAACAAAGACATAGATATT  839

seq1  CAGATTTGTGTTTCATATGACCATGTAAACCAATATTTATTTTTCTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGTGTTTCATATGACCATGTAAACCAATATTTATTTTTCTCTAT  889

seq1  AGTGAGAAAATCATGAGCTTCCAAGTTAACTCTAAGAATTTTATTATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAAATCATGAGCTTCCAAGTTAACTCTAAGAATTTTATTATCAA  939

seq1  AATGAATATTACTTATAATGCCCAGAAAAAAGCATTAGATTGCCCTGGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATTACTTATAATGCCCAGAAAAAAGCATTAGATTGCCCTGGCT  989

seq1  GAGTATCTCCTGTAGATCTCAGCAATGCTCCAATATGAAGTGATTCACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTCCTGTAGATCTCAGCAATGCTCCAATATGAAGTGATTCACAA  1039

seq1  CCTAGGAATTC  1061
      |||||||||||
seq2  CCTAGGAATTC  1050

seq1: chr17_54342733_54343349
seq2: B6Ng01-121L18.g_67_683

seq1  GAATTCAAACTGTAGAGGCCATCTGATGGCTTCCAGAAACACAAGACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGTAGAGGCCATCTGATGGCTTCCAGAAACACAAGACTAA  50

seq1  GAACATTTGACTTCAAGTCTTGGACCTACAGTTTGTGTGCTAGAGTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGACTTCAAGTCTTGGACCTACAGTTTGTGTGCTAGAGTACAC  100

seq1  TTTAACAATTGCATTTAGACATAGGCTGTGCCACTTACTTGATATGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAATTGCATTTAGACATAGGCTGTGCCACTTACTTGATATGCAAA  150

seq1  TGTGCTCCTTACTAGATATGAAAATGGAGTTAAGTTGTATACTATGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCTTACTAGATATGAAAATGGAGTTAAGTTGTATACTATGCTTC  200

seq1  TTGTGTTAGACTTCTATCTGCCCTTGTAGGAAAAGACCTGAGACAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAGACTTCTATCTGCCCTTGTAGGAAAAGACCTGAGACAGACAG  250

seq1  ATCAACTTACACAAAGACGTTTGCCTTTGATTCGGTTTCTGACTTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTACACAAAGACGTTTGCCTTTGATTCGGTTTCTGACTTGTCAG  300

seq1  TCCATGTTTTCTAGTCTCTTCCCTCTGGGTGAGTGGTGATGCAGATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTTTCTAGTCTCTTCCCTCTGGGTGAGTGGTGATGCAGATCATC  350

seq1  ATGATGGGGGAAGTGGTGGGGAAGGAAAGCTGTCCACCTCATCATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGGGAAGTGGTGGGGAAGGAAAGCTGTCCACCTCATCATGGAAA  400

seq1  GGAAATTAAAAGGAGCAGGTTGGACCCCAATATATGCTTCAGGAGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAAAAGGAGCAGGTTGGACCCCAATATATGCTTCAGGAGCATGG  450

seq1  CCTCAGTGACCTAG-TTTCTTCAAGGATTTCACAAATTTTCTACTATCTG  499
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGACCTAGTTTTCTTCAAGGATTTCACAAATTTTCTACTATCTG  500

seq1  TAACATCATCT-GGGTCTCAAGACTTCAAACTATGCCTCTCATGGGAAAT  548
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAACATCATCTGGGGTCTCAAGACTTCAAACTATGCCTCTCATGGGAAAT  550

seq1  TTAAGATACTAACAATAATACTCTGATTTTTTTTTTTAAATACTAAGAAT  598
      |||||| |||||| ||||||||||||||||||||||||||| ||||||||
seq2  TTAAGA-ACTAAC-ATAATACTCTGATTTTTTTTTTTAAATCCTAAGAAT  598

seq1  GTCAAATAAGGTTGTTGAA  617
      |||||||||||||||||||
seq2  GTCAAATAAGGTTGTTGAA  617