BAC Information

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BAC

Clone NameB6Ng01-122A10
Chromosome17 (Build37)18 (Build37)
Map Location 40,098,402 - 40,099,59171,184,064 - 71,184,481
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043297, LOC100043300, EG668200, LOC672857, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122A10.bB6Ng01-122A10.g
ACCDH925560DH925561
length1,1651,143
definitionDH925560|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A10, 5' end.DH925561|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,098,402 - 40,099,591)(71,184,064 - 71,184,481)
sequence
gaattcttctgacaaatggagattctccagttacttaaaagttacactca
tataagaatttagcaaggcctagaaattaggggggttgtgatattacatt
attcatgaggcctgccaagagcagaaccccctggtgctagccttcacaag
gttcaaaggtatagcactagagtgtgaaatccttacctatcactaaactg
accctaggcaggactgctttatctttactgtaaaaatctacctggttcct
ataaatccttttaaagtcattccttggttttgtatcaggtaacttcagtg
tactttgcctgctaccctttgtattttctgtactaaataagactggtgtt
cacttggtgagaatacattcagattctacacaatctcacgtattggtctg
tctgtcaccagccgactccttgtccatctgccccagagacttgttccatg
cagacaaagggacccagagggtctgcagcaagagtccattacccatttgc
tgtcctagaactcactctgtagaccatggctgtcctagaacttactctgt
agactaaggaggcatcactctccaatagttaaacccgaatttgcctctga
agtcctgggcttgcaccactactgattggcttggattcttgtttataaca
gatatgtaatgctaaaatgtcaacatataatcacacaggctgacagtgaa
agaaaagtactttgtattatgatgtaaagtgttgacaagttctacatgag
tcaatgaataatcaagactaaagataatatttgaaatgaactgaaatgaa
gaatatctccctgttttatctacagaatattttgtattatcaatcatgtt
ttttccatattcttcactgattaattaatctactcttatagtctatgata
tttttcacagtcctttaatattctggcaatctgtcaaatatgaattataa
ggatcaaattctttaacactgtcaaggataataattctttcacaacaatt
gttggtgtaaaaagagtgtgcattaatactctataattgttcacaagctg
aaactcaatgcaaaacttttattttaaagattcagtgtatgaaatgtaag
acaacagaaaggcagaaaatttgcagttattgaaaatacttaaaattcga
aatatttagtaatac
gaattctctcctgaggaatactgaatgacttagaagcacacgaaaaaatg
ttaatattcactggggtaatgtaaatcaaaataagccctggtattctacc
tcacatcaggcagaatgattaagatcaaaaattctggtgacagcagatgc
tggggaggatatgccgaaagaggaacactcctccatttttggtgggattg
caagcttgtccaaccactcggaaaatcattctggttgtttctcaggaaat
tggacatagtactaccggaggatcccacaatacctctcctgggcatatat
ccagaagatattccaacacgtaagaggacacatgctccactatgttcata
gcagccttatttataatagccggaagctggaatgaacctagatgcctctc
aacagaagaatggacacataaaatgtgatacattttcacaatggagtact
actcggctattaaaaagaatgaatttatgaaattcctaggcaaatggatg
gatatggagggcattatcctgagtgaggtaacccagttacaaaagaactc
acatgatatgtactcactgataagtggatattagcccagaaacttagaga
acccaagatataagatacaatttgcaaaacatatgacactcatgtagaat
gaagaacacagtgcagacactttgcccctacttagaataaggaacaaaac
accaatggaagaagttacagagacaaagtttggagctgagacgaaaggat
ggaccatccagagacttccatacccggggatccatcccttaatcagcctc
caaatgctgaaaacattgcacatgccagcaagattttgctgaaaggaccc
tgatatagctgtctcttgtgatgctatgcagaggcctagcaaacacagaa
gtggatgctcacagccaggtattggacggatcacagggcccccaatggag
agctagagaagtacccagagctagggatctgcatccctaagtgacacata
tgactacagtaccccgagcttggtgttctctagctgcatatatatcaaaa
aatggctagtcagccatcagtagaaaagagggtccattaagtcttgtaac
ctttgtatgcctcagtacaggtactcaaggaatgaattgtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40098402_40099591
seq2: B6Ng01-122A10.b_46_1210 (reverse)

seq1  GTATTACTAAATATTTTTGGATTTTATGTAATTTTTCATATTTACTGCAA  50
      ||||||||||||| ||| | |||||| |||  |||||  | | |||||||
seq2  GTATTACTAAATA-TTTCGAATTTTAAGTA--TTTTC--AATAACTGCAA  45

seq1  TATTTTCTTGCCTTTCTGTTGGTCTTACATTTTCAATGACACTGAATCTA  100
       |||||| |||||||||||| |||||||| |||||   ||||||||||| 
seq2  -ATTTTC-TGCCTTTCTGTT-GTCTTACA-TTTCA--TACACTGAATCTT  89

seq1  TAAAATATAGGTTTTTGCATTGAGTTTCAGCTTTGTGAACAATTATTAGA  150
      ||||||| | | ||||||||||||||||||| ||||||||||||| ||||
seq2  TAAAATAAAAG-TTTTGCATTGAGTTTCAGC-TTGTGAACAATTA-TAGA  136

seq1  GTATTGATTGCCACCACTCTTTTTTACACCAACAATTGTTTGTTGAAAGA  200
      ||||| | |||   ||||| ||||||||||||||||||||   |||||||
seq2  GTATT-AATGC--ACACTC-TTTTTACACCAACAATTGTT--GTGAAAGA  180

seq1  ATTATTTATCCTTGACAGTGTTAAAGAATTTTGATCCTTATAATTCATAT  250
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTA-TTATCCTTGACAGTGTTAAAGAA-TTTGATCCTTATAATTCATAT  228

seq1  TTGACAGATTGCCAGAATATTAAAGGACTGTGAAAAATATCATAGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGATTGCCAGAATATTAAAGGACTGTGAAAAATATCATAGACTAT  278

seq1  AAGAGTAGATTAATTAATCAGTTGAAGAATATGGGAAAAAACATGATTGA  350
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  AAGAGTAGATTAATTAATCAG-TGAAGAATAT-GGAAAAAACATGATTGA  326

seq1  TAATTACAAAATATTCTGTAGATAAAACAGGGAGATATTCTTCATTTCAG  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAA-TACAAAATATTCTGTAGATAAAACAGGGAGATATTCTTCATTTCAG  375

seq1  TTCATTTCAAATATTATCTTTAGTCTTGATTATTCATTGACTCATGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAAATATTATCTTTAGTCTTGATTATTCATTGACTCATGTAGA  425

seq1  ACTTGTCAACACTTTACATCATAATACAAAGTACTTTTCTTTCACTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCAACACTTTACATCATAATACAAAGTACTTTTCTTTCACTGTCA  475

seq1  GCCTGTGTGATTATATGTTGACATTTTAGCATTACATATCTGTTATAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGATTATATGTTGACATTTTAGCATTACATATCTGTTATAAAC  525

seq1  AAGAATCCAAGCCAATCAGTAGTGGTGCAAGCCCAGGACTTCAGAGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCAAGCCAATCAGTAGTGGTGCAAGCCCAGGACTTCAGAGGCAA  575

seq1  ATTCGGGTTTAACTATTGGAGAGTGATGCCTCCTTAGTCTACAGAGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGTTTAACTATTGGAGAGTGATGCCTCCTTAGTCTACAGAGTAAG  625

seq1  TTCTAGGACAGCCATGGTCTACAGAGTGAGTTCTAGGACAGCAAATGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGACAGCCATGGTCTACAGAGTGAGTTCTAGGACAGCAAATGGGT  675

seq1  AATGGACTCTTGCTGCAGACCCTCTGGGTCCCTTTGTCTGCATGGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTCTTGCTGCAGACCCTCTGGGTCCCTTTGTCTGCATGGAACAA  725

seq1  GTCTCTGGGGCAGATGGACAAGGAGTCGGCTGGTGACAGACAGACCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGGCAGATGGACAAGGAGTCGGCTGGTGACAGACAGACCAATA  775

seq1  CGTGAGATTGTGTAGAATCTGAATGTATTCTCACCAAGTGAACACCAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGATTGTGTAGAATCTGAATGTATTCTCACCAAGTGAACACCAGTC  825

seq1  TTATTTAGTACAGAAAATACAAAGGGTAGCAGGCAAAGTACACTGAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTACAGAAAATACAAAGGGTAGCAGGCAAAGTACACTGAAGTT  875

seq1  ACCTGATACAAAACCAAGGAATGACTTTAAAAGGATTTATAGGAACCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATACAAAACCAAGGAATGACTTTAAAAGGATTTATAGGAACCAGG  925

seq1  TAGATTTTTACAGTAAAGATAAAGCAGTCCTGCCTAGGGTCAGTTTAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTACAGTAAAGATAAAGCAGTCCTGCCTAGGGTCAGTTTAGTG  975

seq1  ATAGGTAAGGATTTCACACTCTAGTGCTATACCTTTGAACCTTGTGAAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAGGATTTCACACTCTAGTGCTATACCTTTGAACCTTGTGAAGG  1025

seq1  CTAGCACCAGGGGGTTCTGCTCTTGGCAGGCCTCATGAATAATGTAATAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCAGGGGGTTCTGCTCTTGGCAGGCCTCATGAATAATGTAATAT  1075

seq1  CACAACCCCCCTAATTTCTAGGCCTTGCTAAATTCTTATATGAGTGTAAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCCCCTAATTTCTAGGCCTTGCTAAATTCTTATATGAGTGTAAC  1125

seq1  TTTTAAGTAACTGGAGAATCTCCATTTGTCAGAAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAACTGGAGAATCTCCATTTGTCAGAAGAATTC  1165

seq1: chr18_71184064_71184481
seq2: B6Ng01-122A10.g_1166_1208 (reverse)

seq1  CCTACAATTCATTCCTTGGCGCAGCAGAACTGTCAACTCTTAGCTTATCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTATGGAGGTAAAATCCTTTGGTGATGTGAGGGAAGTTCAAGTACAGCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTACAATGAACTCCGAGGTCCAAAAACTGTTCTTATTTTGTGTTTGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCACAGTAAGAGCCAAGGTTTTAAGCTCTACTAAAAACAAAACAAAACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AACAAACAAAAATACTTTATCTATTTATGTTCATTAAGAAACTAATAGTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATTATTTTTTGCTGTTTTTTAAATTCATTTTTAATTAGGTATTTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCATTTACATTTAAAATGCTATCCCAAAAGTCCCCCAGACCCTCCCCAC  350
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCAATCCCCTACCCACCCACTCCCACTTCTTGGCCCTGGCGCTCCCCT  400
                       || |    || ||| |   ||| | |    |||
seq2  -----------------CCTA----CAATTCAT--TCCTTGAG--TACCT  25

seq1  GTACTGAGGCATATAAAG  418
      ||||||||||||| ||||
seq2  GTACTGAGGCATACAAAG  43