BAC Information

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BAC

Clone NameB6Ng01-122E16
Chromosome17 (Build37)
Map Location 78,658,665 - 78,799,049
singlet/doubletdoublet
Overlap geneCrim1, Fez2
Upstream geneLOC545234, LOC100043887, LOC668795, LOC383275
Downstream geneLOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122E16.bB6Ng01-122E16.g
ACCDH925755DH925756
length915489
definitionDH925755|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E16, 5' end.DH925756|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,658,665 - 78,659,870)(78,798,555 - 78,799,049)
sequence
gaattcttttaaaaaatataaatataaatatctgtcctgcagtcatggtt
tgtttttcttaattaattttcttttagaaaaaaatacgcatttaagtggc
tctgtgaagacatatttggacattggtgaaaagtttaataatcactactg
tttattatttactctggctaagaactattcaaaaattactctcatgaagc
agacatatttcttaatggatttatttttcaaaggcccttttttgtcgttt
ttttttggtttttgttttgtgagttgttttgtgtggccttgcgatgacca
gaagtatatcacatttttagttttcatattcaggcctgtttttttcttcc
ctcctgtgagtcaaccagaaggcactgatatttcagtcagactgcaggga
atttatgactggcaaaaataatgcataacagacataaactgtgcatctca
tcgagactctcaggcactgttagctttccgctactgtagcaaaataactg
agactatccacttataaagagaaaagggttgactcagagttttgtggttt
ccagtttgaacctgtgtcagtacagcacatcttgcagcactcatggccag
gaagctaagagaggaaggaccagattcatagaatcccattcagagaaatt
aacccactatggaaggacgttccataaaaccccacctttcaaaggccgca
ctggctcagtggcaccgctgtggggaccagccttgaggggatgtgtacaa
tctgtactctggcggacagagactactaccacagggctgcactgtgtgga
aagggtcctcccttcctcctcacctcccttccttcgtaactccctccctt
gtcttctctttttctggtttaaatcacctgccatggtctacgtcattcca
tcacagtttttctta
tagaaagaatagaacttataagttcatgttgaaggatcctgatgaattta
gtctttgaaaacaccaatgggaagaatgtctgtttagtcatttctagtga
tcataaggaaggaaaagcatttgtctgactatactgtcctggaacattta
ttttaaaatatcaaggataatattttcatttgcatgtagtattttaataa
aaatataccttttaagttgcctattatggtagtaggattaagtgaaatgc
ttagttggtaaatcctagcatggttggtaatttctccataaccggtgtta
gggattagatgcaaatcctctatttgttggtgttaacacttggctgagaa
aaacaaatttatccctagaggggtttaaagacttctttctgtaattcccg
tataaatagggttagcatggttccattgtgtagttttgtacagtatttat
actgagaattggatttgttaagacgggggggggggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78658665_78659870
seq2: B6Ng01-122E16.b_45_959

seq1  GAATTCTTTTAAAAAATATAAATATAAATATCTGTCCTGCAGTCATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAAAATATAAATATAAATATCTGTCCTGCAGTCATGGTT  50

seq1  TGTTTTTCTTAATTAATTTTCTTTTAGAAAAAAATACGCATTTAAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTAATTAATTTTCTTTTAGAAAAAAATACGCATTTAAGTGGC  100

seq1  TCTGTGAAGACATATTTGGACATTGGTGAAAAGTTTAATAATCACTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGACATATTTGGACATTGGTGAAAAGTTTAATAATCACTACTG  150

seq1  TTTATTATTTACTCTGGCTAAGAACTATTCAAAAATTACTCTCATGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTACTCTGGCTAAGAACTATTCAAAAATTACTCTCATGAAGC  200

seq1  AGACATATTTCTTAATGGATTTATTTTTCAAAGGCCCTTTTTTGTCGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATTTCTTAATGGATTTATTTTTCAAAGGCCCTTTTTTGTCGTTT  250

seq1  TTTTTTGGTTTTTGTTTTGTGAGTTGTTTTGTGTGGCCTTGCGATGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTGTTTTGTGAGTTGTTTTGTGTGGCCTTGCGATGACCA  300

seq1  GAAGTATATCACATTTTTAGTTTTCATATTCAGGCCTGTTTTTTTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATATCACATTTTTAGTTTTCATATTCAGGCCTGTTTTTTTCTTCC  350

seq1  CTCCTGTGAGTCAACCAGAAGGCACTGATATTTCAGTCAGACTGCAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGAGTCAACCAGAAGGCACTGATATTTCAGTCAGACTGCAGGGA  400

seq1  ATTTATGACTGGCAAAAATAATGCATAACAGACATAAACTGTGCATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGACTGGCAAAAATAATGCATAACAGACATAAACTGTGCATCTCA  450

seq1  TCGAGACTCTCAGGCACTGTTAGCTTTCCGCTACTGTAGCAAAATAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACTCTCAGGCACTGTTAGCTTTCCGCTACTGTAGCAAAATAACTG  500

seq1  AGACTATCCACTTATAAAGAGAAAAGGGTTGACTCAGAGTTTTGTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCCACTTATAAAGAGAAAAGGGTTGACTCAGAGTTTTGTGGTTT  550

seq1  CCAGTTTGAACCTGTGTCAGTACAGCACATCTTGCAGCACTCATGGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGAACCTGTGTCAGTACAGCACATCTTGCAGCACTCATGGCCAG  600

seq1  GAAGCTAAGAGAGGAAGGACCAGATTCATAGAATCCCATTCAGAGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAGAGAGGAAGGACCAGATTCATAGAATCCCATTCAGAGAAATT  650

seq1  AACCCACTATGGAAGGACGTTCCATAAAACCCCACCTTTCAAAGGCCGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACTATGGAAGGACGTTCCATAAAACCCCACCTTTCAAAGGCCGCA  700

seq1  CTGGCTCAGTGGCACCGCTGTGGGGACCAGCCTTGAGGGGATGTGTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCAGTGGCACCGCTGTGGGGACCAGCCTTGAGGGGATGTGTACAA  750

seq1  TCTGTACTCTGGCGGACAGAGACTACTACCACAGGGCTGCACTGTGTGG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTGTACTCTGGCGGACAGAGACTACTACCACAGGGCTGCACTGTGTGGA  800

seq1  AAGGGTCCTCCCTTCCTCCTCACCTCCCTCCCTCCGTACCTCCCTCCCTC  849
      ||||||||||||||||||||||||||||| ||| |||| |||||||||| 
seq2  AAGGGTCCTCCCTTCCTCCTCACCTCCCTTCCTTCGTAACTCCCTCCCT-  849

seq1  TGTCTTCTCCTTTTTCTGTTTTTAATCACCTGCCATGGTCTACGTCATTC  899
      |||||||| ||||||||| ||| |||||||||||||||||||||||||||
seq2  TGTCTTCT-CTTTTTCTGGTTTAAATCACCTGCCATGGTCTACGTCATTC  898

seq1  CATCACAG-TTTTCTTTTGAATGCCTTTTGGAAGTTGAGGTTTTATTTTG  948
      |||||||| |||||||                                  
seq2  CATCACAGTTTTTCTTA---------------------------------  915

seq1  GGAAATAGCCAGAAGGCATATGGAGTCATACCGGCTTAATAACATAGGTA  998
                                                        
seq2  --------------------------------------------------  915

seq1  AGCACTTTGGGGAATTGTGTTTTTGCTGAGATCTAAGTTCAACCTGTTAG  1048
                                                        
seq2  --------------------------------------------------  915

seq1  GCACCAAGAGTGATGTTTATTGTACATCTCATGAGCTACTGCAAAAGAAA  1098
                                                        
seq2  --------------------------------------------------  915

seq1  ATGTCAGAGGGGCATCCGAGGAAAGCATTGGGCGTTAGCCCTGCCCCCCC  1148
                                                        
seq2  --------------------------------------------------  915

seq1  ACACAAGGCATCTAGCAAATGGTGTGGTTTGAATGCAGAAATTCCATGAT  1198
                                                        
seq2  --------------------------------------------------  915

seq1  GCCTCTTA  1206
              
seq2  --------  915

seq1: chr17_78798555_78799049
seq2: B6Ng01-122E16.g_67_561 (reverse)

seq1  ACCTCCCCCCCCCCCGTCTTAACAAATCCAATTCTCAGTATAAATACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCCCCCCCCGTCTTAACAAATCCAATTCTCAGTATAAATACTGT  50

seq1  ACAAAACTACACAATGGAACCATGCTAACCCTATTTATACGGGAATTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTACACAATGGAACCATGCTAACCCTATTTATACGGGAATTACA  100

seq1  GAAAGAAGTCTTTAAACCCCTCTAGGGATAAATTTGTTTTTCTCAGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGTCTTTAAACCCCTCTAGGGATAAATTTGTTTTTCTCAGCCAA  150

seq1  GTGTTAACACCAACAAATAGAGGATTTGCATCTAATCCCTAACACCGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAACACCAACAAATAGAGGATTTGCATCTAATCCCTAACACCGGTT  200

seq1  ATGGAGAAATTACCAACCATGCTAGGATTTACCAACTAAGCATTTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAATTACCAACCATGCTAGGATTTACCAACTAAGCATTTCACTT  250

seq1  AATCCTACTACCATAATAGGCAACTTAAAAGGTATATTTTTATTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTACTACCATAATAGGCAACTTAAAAGGTATATTTTTATTAAAATA  300

seq1  CTACATGCAAATGAAAATATTATCCTTGATATTTTAAAATAAATGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCAAATGAAAATATTATCCTTGATATTTTAAAATAAATGTTCCA  350

seq1  GGACAGTATAGTCAGACAAATGCTTTTCCTTCCTTATGATCACTAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTATAGTCAGACAAATGCTTTTCCTTCCTTATGATCACTAGAAAT  400

seq1  GACTAAACAGACATTCTTCCCATTGGTGTTTTCAAAGACTAAATTCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAACAGACATTCTTCCCATTGGTGTTTTCAAAGACTAAATTCATCA  450

seq1  GGATCCTTCAACATGAACTTATAAGTTCTATTCTTTCTAGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTCAACATGAACTTATAAGTTCTATTCTTTCTAGAATTC  495