BAC Information

Click to search

BAC

Clone NameB6Ng01-123H15
Chromosome4 (Build37)17 (Build37)
Map Location 148,850,356 - 148,850,91447,242,900 - 47,243,754
singlet/doubletsingletsinglet
Overlap geneNmnat1
Upstream geneFrap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985
Downstream geneLzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H15.bB6Ng01-123H15.g
ACCDH926630DH926631
length720855
definitionDH926630|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H15, 5' end.DH926631|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(148,850,356 - 148,850,914)(47,242,900 - 47,243,754)
sequence
gaattccaatgtggccccccatctctgttctcccagctcagaaagggtct
cctaaagtccaggctggccttgaactcacgatgaaaccggaggatgacct
tgaactctgatcctcctgcctccaccaccaagtgccaagatggggccacc
acgtgcacgcagctccttttcttctttttcattcagcctggtagcacagc
tctgagatggcaccacccacagtcaagctgaatcttcccttctcagatat
acctctcaggaaatgtcttcgccagcattcacacaagagtcttcaagctg
attctacacggccatcgagctgacggccatgattgaccggcagggcatgg
agaagtggttcggcaggttaagagcatgtattgccttagcagagggccag
agtttggctctcagaactcacaccacagctgcccagaactggctctagag
gatccagcaccctcttctggcagctatgggtactacaatcatgtgcgcaa
atccacacacataagttgacacatagataaaaataaattctttttttttt
tttttttttttccgaaatagggtttctcggtatagccctggctgtcctgg
aactcactctgtagaccagggctggcctcgaactcagaaatccacctgcc
tctgccctcccgagtgctgggattaaaggcatgcaccacccacgcccggg
ctcaaaaataaattccttac
gaattcaagactagcctggcctatagagtcagactctgtccctccattta
aacaaacaaacaaacaaacaaacaaataaacatgttgtttttaaagacac
accaaaacccaagatcaaagaagggtagaagcaaaaaaactgaagtcacg
taggggcgcaggggctagggaatggtgggacgcaggggctagggaatggt
gggacgagtttgccacgcatggacaaggctgggctggatttactgaggat
ggatgaggtgggaatcgcacatcattttctcatggccttttgctagctct
tggcttttatgtatttaagctttaagaaaacagaaacttgctacatggct
cagtgtgtaaagacaaactgaaggatctgagttcatgtcccaacacccaa
acactagaaagaactgtctcctgtgtgttgttttctcacctgcacacaca
cacaaccacacatgcccatgcacatgtgcgtgtgcaacaaacatgtgcac
acttgcatgtgtgcacacacgcatacatgcggtatgcatgcacacacaca
catgtgcacacacacatacacacacacagatacacacacacaaaccatac
atgctcccacacacactcccacacgcacacgatgtaatgaagataaaata
aaacaaaatttcagaacacataccaattccaaacttcccatttcatttgt
tgctaggtatgcaagttttccaggtacataccacatttagcatgggagat
gataaatgggaagaaaatatgcatttgaatttaaatttcttttcttttcc
tttccttttttctttccttttattttcctctctctctctctctctctctc
cctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148850356_148850914
seq2: B6Ng01-123H15.b_103_722 (reverse)

seq1  CTTTAATCCCAGCACTTGGGA-GGCAGAGGCAGGTGGATTTCTGAGTTCA  49
      |||||||||||||||| |||| ||||||||||||||||||||||||||| 
seq2  CTTTAATCCCAGCACTCGGGAGGGCAGAGGCAGGTGGATTTCTGAGTTCG  50

seq1  GGGCCAG-CCAGGTCTACAGAGTGAGTTCCAGGACAGCCAGGAAAAAAGG  98
       |||||| || |||||||||||||||||||||||||||||||   |    
seq2  AGGCCAGCCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA----  96

seq1  AAAGGTGGAAAGCTATTGGGGATGACACTAGATATTGAGCACAGGCT---  145
       |  | | ||  |||||  |||  | |  | | |   |  | ||  |   
seq2  TACCGAGAAACCCTATTTCGGA-AAAAAAAAAAAAAAAAAAAAGAATTTA  145

seq1  ------TCCACATGTTCACATA----CACACATGTGCAC-CTTCACAGGC  184
            || |  |||  || ||         || ||| | | | |  |  
seq2  TTTTTATCTATGTGTCAACTTATGTGTGTGGATTTGCGCACATGATTGTA  195

seq1  CAACCAATAAAAACAAACAACAAAAGACAG----GGAAACTGCTAAATGT  230
        ||| |||    |      || ||||  |    |||  || ||| |   
seq2  GTACCCATAGCTGC------CAGAAGAGGGTGCTGGATCCT-CTAGA---  235

seq1  GGACAGATATTGAGACTGGTCGT-TGATGTTCGGTGTACTGTTAGTTGGG  279
       | ||| | | |  |   || || ||| |||| | | |     | |  ||
seq2  -GCCAGTTCTGGGCAGCTGTGGTGTGA-GTTCTGAG-AGCCAAACTCTGG  282

seq1  GTAGGGGTTGGGGCTA-----GCGATTAGTCTG----AGCGCTTGCCTCA  320
            | |  ||| |     ||  |||  |||    | | ||| |  ||
seq2  CCCTCTGCTAAGGCAATACATGCTCTTAACCTGCCGAACCACTT-CTCCA  331

seq1  CGTGCAGCCGTTGGATACCAAACAT----TTGATCCCCA--GTGGTGCTC  364
       |  | |||| |      ||| |||     | | | | |  |  ||| | 
seq2  TGCCCTGCCGGT------CAATCATGGCCGTCAGCTCGATGGCCGTG-TA  374

seq1  CCCTCAACCCCAAAA---------GAA-----GAAAAG-GAGTTGTTAAA  399
         ||| |   || |         |||     |  |||  | ||  | | 
seq2  GAATCAGCTTGAAGACTCTTGTGTGAATGCTGGCGAAGACATTTCCTGAG  424

seq1  CAGTAAGGCTTTCAAGGTCTCACTTCTTTCTCCTTACGAAACCAGGGTTT  449
        |||   ||   ||||    |     |||  |||  ||     ||   |
seq2  AGGTATATCTGAGAAGGGAAGA-----TTCAGCTT--GACTGTGGGTGGT  467

seq1  GCTAATGCCAGCCCTGTCCCTTCCAG-------------------CATTA  480
      ||  ||  |||  ||||  || ||||                    |  |
seq2  GC-CATCTCAGAGCTGT-GCTACCAGGCTGAATGAAAAAGAAGAAAAGGA  515

seq1  CCTCTATCCACTT------CCCATACAAAGTGCCT-GTTGCAGAGCTGGG  523
       ||   | ||| |      ||||| |   |  | | || |  |||   ||
seq2  GCTGCGTGCACGTGGTGGCCCCAT-CTTGGCACTTGGTGGTGGAGGCAGG  564

seq1  AGAAACAG-----AAGGGC---------------CATAAGTTCAAGGCCA  553
      || | |||     |||| |               | | ||||||||||||
seq2  AGGATCAGAGTTCAAGGTCATCCTCCGGTTTCATCGTGAGTTCAAGGCCA  614

seq1  GCCTGG  559
      ||||||
seq2  GCCTGG  620

seq1: chr17_47242900_47243754
seq2: B6Ng01-123H15.g_69_923

seq1  GAATTCAAGACTAGCCTGGCCTATAGAGTCAGACTCTGTCCCTCCATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTAGCCTGGCCTATAGAGTCAGACTCTGTCCCTCCATTTA  50

seq1  AACAAACAAACAAACAAACAAACAAATAAACATGTTGTTTTTAAAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACAAATAAACATGTTGTTTTTAAAGACAC  100

seq1  ACCAAAACCCAAGATCAAAGAAGGGTAGAAGCAAAAAAACTGAAGTCACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCCAAGATCAAAGAAGGGTAGAAGCAAAAAAACTGAAGTCACG  150

seq1  TAGGGGCGCAGGGGCTAGGGAATGGTGGGACGCAGGGGCTAGGGAATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCGCAGGGGCTAGGGAATGGTGGGACGCAGGGGCTAGGGAATGGT  200

seq1  GGGACGAGTTTGCCACGCATGGACAAGGCTGGGCTGGATTTACTGAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGAGTTTGCCACGCATGGACAAGGCTGGGCTGGATTTACTGAGGAT  250

seq1  GGATGAGGTGGGAATCGCACATCATTTTCTCATGGCCTTTTGCTAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGTGGGAATCGCACATCATTTTCTCATGGCCTTTTGCTAGCTCT  300

seq1  TGGCTTTTATGTATTTAAGCTTTAAGAAAACAGAAACTTGCTACATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTATGTATTTAAGCTTTAAGAAAACAGAAACTTGCTACATGGCT  350

seq1  CAGTGTGTAAAGACAAACTGAAGGATCTGAGTTCATGTCCCAACACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTAAAGACAAACTGAAGGATCTGAGTTCATGTCCCAACACCCAA  400

seq1  ACACTAGAAAGAACTGTCTCCTGTGTGTTGTTTTCTCACCTGCACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGAAAGAACTGTCTCCTGTGTGTTGTTTTCTCACCTGCACACACA  450

seq1  CACAACCACACATGCCCATGCACATGTGCGTGTGCAACAAACATGTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCACACATGCCCATGCACATGTGCGTGTGCAACAAACATGTGCAC  500

seq1  ACTTGCATGTGTGCACACACGCATACATGCGGTATGCATGCACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATGTGTGCACACACGCATACATGCGGTATGCATGCACACACACA  550

seq1  CATGTGCACACACACATACACACACACAGATACACACACAC-AACCATAC  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGTGCACACACACATACACACACACAGATACACACACACAAACCATAC  600

seq1  ATGCTCCCACACACACTCCCACACGCACACGATGTAATGAAGATAAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCACACACACTCCCACACGCACACGATGTAATGAAGATAAAATA  650

seq1  AAACAAAATTTCAGAACACATACCAATTCCAAACTTCCCATTTCATTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATTTCAGAACACATACCAATTCCAAACTTCCCATTTCATTTGT  700

seq1  TGCTAGGTATGCAAG-TTTCCAGGTACATACCACATTTAGCATGGGAGAT  748
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCTAGGTATGCAAGTTTTCCAGGTACATACCACATTTAGCATGGGAGAT  750

seq1  GATAAATGGGAAGAAAATATGCATTTGAATTTAAATTTCTTTTTCTTTTC  798
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATAAATGGGAAGAAAATATGCATTTGAATTTAAATTTC-TTTTCTTTTC  799

seq1  TTTTCTTTTTTTCTTTTCCTTTTATTTTCCTCTCTCTCTCTCTCTCTCTC  848
       |||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTTC-TTTCCTTTTATTTTCCTCTCTCTCTCTCTCTCTCTC  848

seq1  TCCCTCC  855
      |||||||
seq2  TCCCTCC  855