BAC Information

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BAC

Clone NameB6Ng01-123P13
Chromosome17 (Build37)
Map Location 21,751,512 - 21,752,610
singlet/doubletsinglet
Overlap genenone
Upstream geneFpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123P13.bB6Ng01-123P13.g
ACCDH927000DH927001
length1,2221,087
definitionDH927000|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P13, 5' end.DH927001|Mus musculus domesticus DNA, BAC clone: B6Ng01-123P13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaaccaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggtttgggatcttcct
gagaagcaagcaataaagctcttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaataagggctacatggtgagacccc
atgtctttcttttttatttctgtgataagaaacacacacacacacacaca
cacgtgcgcgtgcacgcaacactgacctaattggtttttttttttttttt
tcgagacagggtttctctgtgtagccctggctgtcctggaactcactctg
tagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccga
gtgctgggattaaaggtgtgcgccaccacgcccggctaacactgacctaa
ttgtagtacttagtatatctatacattaaccctctattctttcttataag
gaacatatccaaattctatctttctaatcatttaaagcattacatgttag
attatggtttatatttatcatgttgtggcaattaacgtaacttatccatg
ccactaagcaatagccttgccattactcattatctcatattctctccagc
cactgacaaccagcatttactttccccatctaccatctatcttctatcat
acttataattaaggtcatttgtggtttgtattccatctgtcttcacataa
tagagtccacaaagttctattatattattatggatgggatctttctatac
atctctatggtggaatggtattttactcagaagggatcacatttttattg
acttatacatttgttgatggacattaaagatgatcccatgttctatgatt
taacagtgactatgtgcatctccagtccacactgaatacttctttgagtg
tgtccaggatttgaactgcatcctcatagtatgaacttcctactagctct
cattatggtgtctgtatttcatgttcaatgaaaaggacttcatgctgaat
gtccacatgataccaggctaggaagttgcctttaatataacttggactga
ctgtccttcattcccaactttctgaccattattgggaaccttatagtact
tgggcattgatacatcttgtga
gaattccaaaccaaaaaaaaaaaaaaaaaagagagagtcgtggtgggacc
catcctccatgatgccaggatctcagccactcagcaggtagtggcatctt
ggaggaaagctgcagatgtggcatgacaatagactttacctatgtctgaa
gactccaccctaggtgggctagcctgctgtagcaagacaggtctgagcag
cctgctcaaggctgggggaagagcacaatatctgggtaggacttttcaat
ggcttccttctttagaagcttgcatagtgcttcaggtcctgtaaaagtta
ctcatcagggaggggtattcattatgtagaacaggctggcgctgaactca
gagttccccttgttctgcctttttagtgctggggttaaaggcttgcataa
ccttgcaaactatatgtaactgtttgtcagtgtgtcaggacaattacaca
ggctacttaatacacataagtgaacatgtagatcttattcctacttatat
taaagacttattttacaccgaattgaaaactctaatttaaatagatgagt
tcccaggtccatataacatatgaaatttaaactatatagaacaagtctgt
ccatagccaatatcggagagataaagtgaaccccagctgttccctttcct
aggctgtggtcttgtgtgaggccagtgcaggcaaggacagttgctgttga
aagatcctgagagagagtgaaaaattatttaagcccctagacctgtgtcc
aaaatagacctcactaatggcagggagtacaacttgccccagttgttcca
ggaaccgttccttaaacctgctatgcaaacttgctagcttgccaaatgct
atagcccaatgccaggtgtttgcggtttttgccagatgtttgcagtttct
gcctttataaaaccccttacccttgagctgtcgtcgactcctctaccgct
gcatgggatacgagtcccccacagtgcactgtctttcccaaataggctct
gcagttgcatcaggaccattctcgtgagtattgggttcaccctctcctgg
atcgaatgtgaggggagtctcacgcgtgggtctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21751512_21752610
seq2: B6Ng01-123P13.g_70_1156

seq1  GAATTCCAAACCAAAAAAAAAAAAAAAAAAGAGAGAGTCGTGGTGGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCAAAAAAAAAAAAAAAAAAGAGAGAGTCGTGGTGGGACC  50

seq1  CATCCTCCATGATGCCAGGATCTCAGCCACTCAGCAGGTAGTGGCATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCATGATGCCAGGATCTCAGCCACTCAGCAGGTAGTGGCATCTT  100

seq1  GGAGGAAAGCTGCAGATGTGGCATGACAATAGACTTTACCTATGTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGCTGCAGATGTGGCATGACAATAGACTTTACCTATGTCTGAA  150

seq1  GACTCCACCCTAGGTGGGCTAGCCTGCTGTAGCAAGACAGGTCTGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACCCTAGGTGGGCTAGCCTGCTGTAGCAAGACAGGTCTGAGCAG  200

seq1  CCTGCTCAAGGCTGGGGGAAGAGCACAATATCTGGGTAGGACTTTTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAAGGCTGGGGGAAGAGCACAATATCTGGGTAGGACTTTTCAAT  250

seq1  GGCTTCCTTCTTTAGAAGCTTGCATAGTGCTTCAGGTCCTGTAAAAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTCTTTAGAAGCTTGCATAGTGCTTCAGGTCCTGTAAAAGTTA  300

seq1  CTCATCAGGGAGGGGTATTCATTATGTAGAACAGGCTGGCGCTGAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGGGAGGGGTATTCATTATGTAGAACAGGCTGGCGCTGAACTCA  350

seq1  GAGTTCCCCTTGTTCTGCCTTTTTAGTGCTGGGGTTAAAGGCTTGCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCCTTGTTCTGCCTTTTTAGTGCTGGGGTTAAAGGCTTGCATAA  400

seq1  CCTTGCAAACTATATGTAACTGTTTGTCAGTGTGTCAGGACAATTACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAAACTATATGTAACTGTTTGTCAGTGTGTCAGGACAATTACACA  450

seq1  GGCTACTTAATACACATAAGTGAACATGTAGATCTTATTCCTACTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTTAATACACATAAGTGAACATGTAGATCTTATTCCTACTTATAT  500

seq1  TAAAGACTTATTTTACACCGAATTGAAAACTCTAATTTAAATAGATGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTTATTTTACACCGAATTGAAAACTCTAATTTAAATAGATGAGT  550

seq1  TCCCAGGTCCATATAACATATGAAATTTAAACTATATAGAACAAGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTCCATATAACATATGAAATTTAAACTATATAGAACAAGTCTGT  600

seq1  CCATAGCCAATATCGGAGAGATAAAGTGAACCCCAGCTGTTCCCTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCAATATCGGAGAGATAAAGTGAACCCCAGCTGTTCCCTTTCCT  650

seq1  AGGCTGTGGTCTTGTGTGAGGCCAGTGCAGGCAAGGACAGTTGCTGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGTCTTGTGTGAGGCCAGTGCAGGCAAGGACAGTTGCTGTTGA  700

seq1  AAGATCCTGAGAGAGAGTGAAAAATTATTTAAGCCCCTAGACCTGTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGAGAGAGAGTGAAAAATTATTTAAGCCCCTAGACCTGTGTCC  750

seq1  AAAATAGACCTCACTAATGGCAGGGAGTACAACTTGCCCCAGTTGTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGACCTCACTAATGGCAGGGAGTACAACTTGCCCCAGTTGTTCCA  800

seq1  GGAACCGTTCCTTAAACCTGCTATGCAAACTTGCTAGCTTGCCAAATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCGTTCCTTAAACCTGCTATGCAAACTTGCTAGCTTGCCAAATGCT  850

seq1  ATAGCCCAATGCCAGGTGTTTGCGGTTTTTGCCAGATGTTTGCAGTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAATGCCAGGTGTTTGCGGTTTTTGCCAGATGTTTGCAGTTTCT  900

seq1  GCCTTTATAAAACCCCTTACCCCTTGAGCTTGTCGTCGACTCCTCTACCG  950
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  GCCTTTATAAAACCCCTTA-CCCTTGAGC-TGTCGTCGACTCCTCTACCG  948

seq1  CTGCATGGGATACGAGTCACCCACAGTGCACTGGTCTTTCCCAAATTAAG  1000
      |||||||||||||||||| ||||||||||||| |||||||||||| || |
seq2  CTGCATGGGATACGAGTCCCCCACAGTGCACT-GTCTTTCCCAAA-TAGG  996

seq1  CTCTTGCAGTTTGCATCAAGACCATTTCTCGTGAGTGATTTGGGGTGTCA  1050
      ||| ||||| |||||||| ||||| ||||||||||| |||  |||| |||
seq2  CTC-TGCAG-TTGCATCAGGACCA-TTCTCGTGAGT-ATT--GGGT-TCA  1039

seq1  -CCTCTCCTGAGTCAGAGTGTG-GGGGAGTCCTCACGCTGTGGGTCTTTC  1098
       |||||||||  || || |||| ||||||| ||||||| |||||||||||
seq2  CCCTCTCCTGGATC-GAATGTGAGGGGAGT-CTCACGC-GTGGGTCTTTC  1086

seq1  A  1099
      |
seq2  A  1087