BAC Information

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BAC

Clone NameB6Ng01-124F18
Chromosome17 (Build37)
Map Location 85,711,158 - 85,867,823
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneThada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124F18.bB6Ng01-124F18.g
ACCDH927288DH927289
length1,1101,093
definitionDH927288|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F18, 5' end.DH927289|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,866,710 - 85,867,823)(85,711,158 - 85,712,252)
sequence
gaattcaagttgatccaccacactttcacctaaacttttatgaggaagcc
ttgggatttctatgaattccgggctaaatgcatgcttggagtgggtttgc
ttctctcaccctgacgtcacccacaggactgccacttgtattccttggac
tccccacttctgctaacgtgctccccattagcatgcagagtgacctttaa
caagtgggcgtttggggctggcggtgtagatgagcacttgctcggactct
gggctccatctccttgcctagtcacatcctgaggaggccaagccacgttg
cccttctctccctccccgagggccagcctctgactccctaccatgaccgc
ctgtatgactggccccatctcaccaaggtaggccccatcaaggaggcttt
cactgatcttcttgcttgaggtcagccctatcagctggatcttatctgat
tttcataggctttattacaatgcacattactctataatgcactgtcaccg
ttgtttactgtttcaagttccttgtagagagccgttttgcctttcttgca
tgacccccagacataacagagtctttctattcacctttggatcttggacg
tgtgccgcagtgcccagaacacagtggggataagcaggtaaggatgaagc
tcgggtaccaccctcccatttctcctcccatttcctccacagtagaacct
gaggccagtccccagccttcagcttggggaagaggaaggtgatgctctga
gaagccatcccacaagttcctctaagaagtcctaattagttattctctta
ggatgccaagactgagagcatctccctgggaccagagcctcatccccaga
gggagtccaaatcactggcattaacagtagaagggttttattttaagtac
ttgagaagttagcacgaaatgagacttcaaaacatttagttcatctccct
gtgtccaaaagggaagtagatgctcaaaagtttgcctagaatgagcagtt
gcttaccggccttgtgcagaagctctttcttgatgctgtccttcgttgcc
tccaactgtcttcgcctggagtcttcttcttcagccagctgcatggcatt
gctgaattct
gaattctcttccttttctccctgggaagctaatttggggaaggaaggctt
atgtatgaatctttccgttttcttttaacaattagcgcatatccatgctt
atttcttaactgaacactcagctgctcttgcatgcacatatttgcatata
ctgtgggtacgatgcatgagtattaaaagccatccgagatttacacgaca
cacaaaaaacagtttgatttattttaattttgactaattatgaattaaaa
gtatagaaaatataataaactatccatacacttttcctaaaagatagcat
tttctgagaaacaggcaaacaattgactatcatgatttgtgtggggcatt
agatgtctcatccacattttacaagaattccctatttgtgcatatgtaat
tataattttaaaatattctgatttttataattgacaattttccaaatgtt
ctttccaaatgaattctagaaatgagatctttaatttgtattatgaaatt
taaaagccaataaagttatgaaatgtatgatggtacagatattcattacc
cacctccgtgattaaagaaaagcatagtcagtctccttttatttatgtct
ccacctgtcccccttcttcccaccaccggttataaagaagtcaaatgcca
gatatcatttctctcctgaatatcttcattcacaaatggcacgtgtgttt
tctccatcacatcagatatgcacagttccagtttctctgcccttttgaca
gtctcccactgccactctttacagtggctccagcctggctccaggatgca
cacacacatggccgagggaccactctgcttcctttactgtatcaccagcc
atttgtcataggatctcccggagtttggactttgctaacttactttattt
ctgtgcctcacaatagctttctgtcccattctagagtgttctctggcatt
tgctttgaatgtcaatctcaactggcccttgtttcccaatgcaagtgaag
cctctgagttataattgtgtcctgatggctcactttctttctctgtgaag
ggaaggaggcagagcaatgtcccaaggatggcgttgaatcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85866710_85867823
seq2: B6Ng01-124F18.b_44_1153 (reverse)

seq1  AGAAATCAGCAAATGGCTCTGCAGCTGCTGGAAGAGGAAGACT-CAGGCG  49
      |||| |||||||   ||  ||||||||   ||||| ||||||| ||||||
seq2  AGAATTCAGCAA--TGCCATGCAGCTGGCTGAAGAAGAAGACTCCAGGCG  48

seq1  AAGACAGTTGGGAGGCACAGAAGGACAGCATCA--GAAGAGC-TCTGCAC  96
      ||||||||| |||||||  ||||||||||||||   |||||| |||||||
seq2  AAGACAGTT-GGAGGCAACGAAGGACAGCATCAAGAAAGAGCTTCTGCAC  97

seq1  AAGGCCGGTAGCAAACTGCTCATTCTAGGCAAACTTTCTGGAGCATCTAC  146
      ||||||||||   |||||||||||||||||||||||  | ||||||||| 
seq2  AAGGCCGGTAAGCAACTGCTCATTCTAGGCAAACTT--TTGAGCATCTA-  144

seq1  CTTCCCTTTTGGAACACAGGGGAGATGAACTAAATGTTTTGAAGTCTCAT  196
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  CTTCCCTTTTGG-ACACA-GGGAGATGAACTAAATGTTTTGAAGTCTCAT  192

seq1  TTCGTGCTAACTTCTCAAGTACTTAAAATAAAACCCTTCTACTGTTAATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGCTAACTTCTCAAGTACTTAAAATAAAACCCTTCTACTGTTAATG  242

seq1  CCAGTGATTTGGACTCCCTCTGGGGATGAGGCTCTGGTCCCAGGGAGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATTTGGACTCCCTCTGGGGATGAGGCTCTGGTCCCAGGGAGATG  292

seq1  CTCTCAGTCTTGGCATCCTAAGAGAATAACTAATTAGGACTTCTTAGAGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGTCTTGGCATCCTAAGAGAATAACTAATTAGGACTTCTTAGAGG  342

seq1  AACTTGTGGGATGGCTTCTCAGAGCATCACCTTCCTCTTCCCCAAGCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGGGATGGCTTCTCAGAGCATCACCTTCCTCTTCCCCAAGCTGA  392

seq1  AGGCTGGGGACTGGCCTCAGGTTCTACTGTGGAGGAAATGGGAGGAGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGGACTGGCCTCAGGTTCTACTGTGGAGGAAATGGGAGGAGAAA  442

seq1  TGGGAGGGTGGTACCCGAGCTTCATCCTTACCTGCTTATCCCCACTGTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGTGGTACCCGAGCTTCATCCTTACCTGCTTATCCCCACTGTGT  492

seq1  TCTGGGCACTGCGGCACACGTCCAAGATCCAAAGGTGAATAGAAAGACTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCACTGCGGCACACGTCCAAGATCCAAAGGTGAATAGAAAGACTC  542

seq1  TGTTATGTCTGGGGGTCATGCAAGAAAGGCAAAACGGCTCTCTACAAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTCTGGGGGTCATGCAAGAAAGGCAAAACGGCTCTCTACAAGGA  592

seq1  ACTTGAAACAGTAAACAACGGTGACAGTGCATTATAGAGTAATGTGCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAACAGTAAACAACGGTGACAGTGCATTATAGAGTAATGTGCATT  642

seq1  GTAATAAAGCCTATGAAAATCAGATAAGATCCAGCTGATAGGGCTGACCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAAGCCTATGAAAATCAGATAAGATCCAGCTGATAGGGCTGACCT  692

seq1  CAAGCAAGAAGATCAGTGAAAGCCTCCTTGATGGGGCCTACCTTGGTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGAAGATCAGTGAAAGCCTCCTTGATGGGGCCTACCTTGGTGAG  742

seq1  ATGGGGCCAGTCATACAGGCGGTCATGGTAGGGAGTCAGAGGCTGGCCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCAGTCATACAGGCGGTCATGGTAGGGAGTCAGAGGCTGGCCCT  792

seq1  CGGGGAGGGAGAGAAGGGCAACGTGGCTTGGCCTCCTCAGGATGTGACTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGGAGAGAAGGGCAACGTGGCTTGGCCTCCTCAGGATGTGACTA  842

seq1  GGCAAGGAGATGGAGCCCAGAGTCCGAGCAAGTGCTCATCTACACCGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGAGATGGAGCCCAGAGTCCGAGCAAGTGCTCATCTACACCGCCA  892

seq1  GCCCCAAACGCCCACTTGTTAAAGGTCACTCTGCATGCTAATGGGGAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAACGCCCACTTGTTAAAGGTCACTCTGCATGCTAATGGGGAGCA  942

seq1  CGTTAGCAGAAGTGGGGAGTCCAAGGAATACAAGTGGCAGTCCTGTGGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGCAGAAGTGGGGAGTCCAAGGAATACAAGTGGCAGTCCTGTGGGT  992

seq1  GACGTCAGGGTGAGAGAAGCAAACCCACTCCAAGCATGCATTTAGCCCGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCAGGGTGAGAGAAGCAAACCCACTCCAAGCATGCATTTAGCCCGG  1042

seq1  AATTCATAGAAATCCCAAGGCTTCCTCATAAAAGTTTAGGTGAAAGTGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAGAAATCCCAAGGCTTCCTCATAAAAGTTTAGGTGAAAGTGTG  1092

seq1  GTGGATCAACTTGAATTC  1114
      ||||||||||||||||||
seq2  GTGGATCAACTTGAATTC  1110

seq1: chr17_85711158_85712252
seq2: B6Ng01-124F18.g_67_1159

seq1  GAATTCTCTTCCTTTTCTCCCTGGGAAGCTAATTTGGGGAAGGAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTTTTCTCCCTGGGAAGCTAATTTGGGGAAGGAAGGCTT  50

seq1  ATGTATGAATCTTTCCGTTTTCTTTTAACAATTAGCGCATATCCATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAATCTTTCCGTTTTCTTTTAACAATTAGCGCATATCCATGCTT  100

seq1  ATTTCTTAACTGAACACTCAGCTGCTCTTGCATGCACATATTTGCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAACTGAACACTCAGCTGCTCTTGCATGCACATATTTGCATATA  150

seq1  CTGTGGGTACGATGCATGAGTATTAAAAGCCATCCGAGATTTACACGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTACGATGCATGAGTATTAAAAGCCATCCGAGATTTACACGACA  200

seq1  CACAAAAAACAGTTTGATTTATTTTAATTTTGACTAATTATGAATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAACAGTTTGATTTATTTTAATTTTGACTAATTATGAATTAAAA  250

seq1  GTATAGAAAATATAATAAACTATCCATACACTTTTCCTAAAAGATAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAAATATAATAAACTATCCATACACTTTTCCTAAAAGATAGCAT  300

seq1  TTTCTGAGAAACAGGCAAACAATTGACTATCATGATTTGTGTGGGGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAAACAGGCAAACAATTGACTATCATGATTTGTGTGGGGCATT  350

seq1  AGATGTCTCATCCACATTTTACAAGAATTCCCTATTTGTGCATATGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTCATCCACATTTTACAAGAATTCCCTATTTGTGCATATGTAAT  400

seq1  TATAATTTTAAAATATTCTGATTTTTATAATTGACAATTTTCCAAATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTAAAATATTCTGATTTTTATAATTGACAATTTTCCAAATGTT  450

seq1  CTTTCCAAATGAATTCTAGAAATGAGATCTTTAATTTGTATTATGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAATGAATTCTAGAAATGAGATCTTTAATTTGTATTATGAAATT  500

seq1  TAAAAGCCAATAAAGTTATGAAATGTATGATGGTACAGATATTCATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCAATAAAGTTATGAAATGTATGATGGTACAGATATTCATTACC  550

seq1  CACCTCCGTGATTAAAG-AAAGCATAGTCAGTCTCCTTTTATTTATGTCT  599
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACCTCCGTGATTAAAGAAAAGCATAGTCAGTCTCCTTTTATTTATGTCT  600

seq1  CCACCTGTCCCCCTTCTTCCCACCACCGGTTATAAAGAAGTCAAATGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTCCCCCTTCTTCCCACCACCGGTTATAAAGAAGTCAAATGCCA  650

seq1  GATATCATTTCTCTCCTGAATATCTTCATTCACAAATGGCACGTGTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTTCTCTCCTGAATATCTTCATTCACAAATGGCACGTGTGTTT  700

seq1  TCTCCATCACATCAGATATGCACAGTTCCAGTTTCTCTGCCC-TTTGACA  748
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTCCATCACATCAGATATGCACAGTTCCAGTTTCTCTGCCCTTTTGACA  750

seq1  GTCTCCCACTGCCAC-CTTTACAGTGGCTCCAGCCTGGCTCCAGGATGCA  797
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCTCCCACTGCCACTCTTTACAGTGGCTCCAGCCTGGCTCCAGGATGCA  800

seq1  CACACACATGGCCGAGGGACCACTCTGCTTCCTTTACTGTATCACCAGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGGCCGAGGGACCACTCTGCTTCCTTTACTGTATCACCAGCC  850

seq1  ATTTGTCATAGGATCTCCCGGAGTTTGGACTTTGCTAACTTACTTTATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCATAGGATCTCCCGGAGTTTGGACTTTGCTAACTTACTTTATTT  900

seq1  CTGTGCCTCCACATTAGCTTTCCTGTCCCATTCTAGAGTGTTCTCTGCCA  947
      |||||||| |||| ||||||| ||||||||||||||||||||||||| ||
seq2  CTGTGCCT-CACAATAGCTTT-CTGTCCCATTCTAGAGTGTTCTCTGGCA  948

seq1  TTTGCTTTGAATGTCATTCTCAACCTGCCCTTGTTTCCCTATGCAAGTGA  997
      |||||||||||||||| |||||||  ||||||||||||| ||||||||||
seq2  TTTGCTTTGAATGTCAATCTCAACTGGCCCTTGTTTCCCAATGCAAGTGA  998

seq1  AGGCTCTGAAGTTATAAATGTGTCCTGATGGGCTCACTTTC-TTCTCTTG  1046
      || ||||| |||||||| ||||||||||| ||||||||||| ||||||  
seq2  AGCCTCTG-AGTTATAATTGTGTCCTGAT-GGCTCACTTTCTTTCTCTGT  1046

seq1  TAAGGGAAGGAGGCAGGAGC-ATGTCCCCAAGGGATGGCGTAGAATCTTT  1095
       |||||||||||||| |||| |||||||  | ||||||||| ||||||||
seq2  GAAGGGAAGGAGGCA-GAGCAATGTCCC--AAGGATGGCGTTGAATCTTT  1093